ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf28n15 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK242087.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J075140K23, full insert sequence Length = 1916 Score = 912 bits (460), Expect = 0.0 Identities = 877/1016 (86%) Strand = Plus / Plus Query: 173 ctctactcctccggcacgacgggggagagcaagggcgtggtcctgacgcaccgcaacttc 232 |||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 632 ctctactcgtcgggcacgacgggggatagcaagggcgtcatcctgacgcaccgcaacttc 691 Query: 233 atcgcggcggcgacgatggtgacgtcggaccaggacgagcggggggagccgcccaacgtg 292 ||||| ||||||| ||||||||| || ||||| |||||||| ||||| |||||||||| Sbjct: 692 atcgccgcggcgaggatggtgacctccgaccaagacgagcgccgggaggggcccaacgtg 751 Query: 293 ttcctctgcttcctgcccatgttccacatcttcggcctctccgtcatcaccttcgcgcag 352 |||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||| Sbjct: 752 ttcctctgcttcctccccatgttccacatcttcggcctgtccgtcatcacgtacgcgcag 811 Query: 353 ctgcagcgcggcaacgccgtggtcgtcatgtcgggcttcgccatggactcggtgatgagg 412 ||||| ||||| |||||| | ||| ||||||| | |||| ||| |||| ||||| | Sbjct: 812 ctgcatcgcgggaacgccatcatcgccatgtcgcggttcgacatcaactccctgatggag 871 Query: 413 gccgtgcagcagcaccgggtgacgcacgtcttctgcgtgccgccggtgatgatcgcgctc 472 ||||||||| |||||| || |||||| | ||||||||||||||||| || ||||||||| Sbjct: 872 gccgtgcagaggcaccgcgtcacgcacctgttctgcgtgccgccggtcattatcgcgctc 931 Query: 473 gccaagcacgggcgggtcggcaagtacgacctcagctcgctcaagttcatcggctccggc 532 |||||||||||| || ||| |||||||| |||||||| ||||||||||||||||||||| Sbjct: 932 gccaagcacgggaaggccggtaagtacgatctcagctctctcaagttcatcggctccggc 991 Query: 533 gccgcgccgctcggcagggacgtcatggaggtggtggccaagaacttccccgacgccgag 592 |||||||||||||||| ||| || |||||||| ||||||||||| ||||| ||| ||| Sbjct: 992 gccgcgccgctcggcaaggatgtgatggaggtcgtggccaagaaattcccggacagtgag 1051 Query: 593 atcgttcagggctatggtatgactgagacttgtgggatcatatcgcttgaatacccagaa 652 || |||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 1052 attgttcagggttatggtatgactgagacttgtggaatcatatcgctcgagtacccagaa 1111 Query: 653 aagggacaggctcgtcaatttgggtcaaccggaacgcttgttgttggagttgaagcaaaa 712 || |||||||||||| ||||||||||||| || |||||||| |||||||| ||||| Sbjct: 1112 aaaggacaggctcgtgaatttgggtcaactggcacgcttgtctcaggagttgaggcaaag 1171 Query: 713 gttatcgacgtagaaacgcaaaaacatctaccgccaagtcaactaggagaaatctgtatc 772 || ||||| || | || ||||||||||||||| | |||| |||||||||| ||| | Sbjct: 1172 attgtcgacataaagacattaaaacatctaccgcccaatcaagtaggagaaatttgtgtt 1231 Query: 773 cgaggaccacacataatgcaagggtatttcaacaatgtagaggctactgaatttacaatc 832 ||||| ||| | ||||||||||||||||||||||||| | |||||||||||||||||| Sbjct: 1232 cgagggccaaatgtaatgcaagggtatttcaacaatgtgcaagctactgaatttacaatc 1291 Query: 833 aggcaaggatggttgcatactggtgatcttggatactttgatgaagaaggccagcttttt 892 | |||||| |||||||| |||||||||||||||||||| || | || ||||||||||||| Sbjct: 1292 aagcaagggtggttgcacactggtgatcttggatacttcgacggaggaggccagcttttt 1351 Query: 893 gtcgtcgatagactaaaagagctgattaagtacaaaggtttccagattgcacctgctgag 952 || || |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct: 1352 gttgttgatagacttaaagaactgattaagtacaaaggtttccagattgcacctgccgag 1411 Query: 953 cttgaaggattacttctatctcatccagagattctagacgccgtcgttatcccgttccct 1012 |||||||| ||||||||||||||||||||||||||||| || || ||||||||||| ||| Sbjct: 1412 cttgaagggttacttctatctcatccagagattctagatgctgttgttatcccgtttcct 1471 Query: 1013 gatgatgaagctggggaagttcctattgcctatgtggtgaggtcacctgccagttcatta 1072 |||| | |||||||||| ||||| ||||||||||| || ||||||||| ||||||||| Sbjct: 1472 gatgctaaagctggggaggttcccattgcctatgttgttcggtcacctgacagttcattg 1531 Query: 1073 accgaagtggacgtccaaaaatttatcgccaaacaggtcacgtactacaaaagactgagg 1132 || ||||| || |||||||||||||| | |||||||| |||||||||||||| ||| | Sbjct: 1532 acagaagttgatgtccaaaaatttattgaaaaacaggtggcgtactacaaaagattgaag 1591 Query: 1133 cgggttaccttcgtggagagcgtgccaaaatcagccgcaggcaagatcttgagaag 1188 | |||||||| |||| |||||||| |||||||| |||| ||||| ||||||| Sbjct: 1592 agagttacctttgtgggcagcgtgcccaaatcagcttcaggaaagattctgagaag 1647
>ref|NM_001055527.1| Oryza sativa (japonica cultivar-group) Os03g0152400 (Os03g0152400) mRNA, complete cds Length = 2085 Score = 876 bits (442), Expect = 0.0 Identities = 805/926 (86%) Strand = Plus / Plus Query: 173 ctctactcctccggcacgacgggggagagcaagggcgtggtcctgacgcaccgcaacttc 232 |||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 607 ctctactcgtcgggcacgacgggggatagcaagggcgtcatcctgacgcaccgcaacttc 666 Query: 233 atcgcggcggcgacgatggtgacgtcggaccaggacgagcggggggagccgcccaacgtg 292 ||||| ||||||| ||||||||| || ||||| |||||||| ||||| |||||||||| Sbjct: 667 atcgccgcggcgaggatggtgacctccgaccaagacgagcgccgggaggggcccaacgtg 726 Query: 293 ttcctctgcttcctgcccatgttccacatcttcggcctctccgtcatcaccttcgcgcag 352 |||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||| Sbjct: 727 ttcctctgcttcctccccatgttccacatcttcggcctgtccgtcatcacgtacgcgcag 786 Query: 353 ctgcagcgcggcaacgccgtggtcgtcatgtcgggcttcgccatggactcggtgatgagg 412 ||||| ||||| |||||| | ||| ||||||| | |||| ||| |||| ||||| | Sbjct: 787 ctgcatcgcgggaacgccatcatcgccatgtcgcggttcgacatcaactccctgatggag 846 Query: 413 gccgtgcagcagcaccgggtgacgcacgtcttctgcgtgccgccggtgatgatcgcgctc 472 ||||||||| |||||| || |||||| | ||||||||||||||||| || ||||||||| Sbjct: 847 gccgtgcagaggcaccgcgtcacgcacctgttctgcgtgccgccggtcattatcgcgctc 906 Query: 473 gccaagcacgggcgggtcggcaagtacgacctcagctcgctcaagttcatcggctccggc 532 |||||||||||| || ||| |||||||| |||||||| ||||||||||||||||||||| Sbjct: 907 gccaagcacgggaaggccggtaagtacgatctcagctctctcaagttcatcggctccggc 966 Query: 533 gccgcgccgctcggcagggacgtcatggaggtggtggccaagaacttccccgacgccgag 592 |||||||||||||||| ||| || |||||||| ||||||||||| ||||| ||| ||| Sbjct: 967 gccgcgccgctcggcaaggatgtgatggaggtcgtggccaagaaattcccggacagtgag 1026 Query: 593 atcgttcagggctatggtatgactgagacttgtgggatcatatcgcttgaatacccagaa 652 || |||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 1027 attgttcagggttatggtatgactgagacttgtggaatcatatcgctcgagtacccagaa 1086 Query: 653 aagggacaggctcgtcaatttgggtcaaccggaacgcttgttgttggagttgaagcaaaa 712 || |||||||||||| ||||||||||||| || |||||||| |||||||| ||||| Sbjct: 1087 aaaggacaggctcgtgaatttgggtcaactggcacgcttgtctcaggagttgaggcaaag 1146 Query: 713 gttatcgacgtagaaacgcaaaaacatctaccgccaagtcaactaggagaaatctgtatc 772 || ||||| || | || ||||||||||||||| | |||| |||||||||| ||| | Sbjct: 1147 attgtcgacataaagacattaaaacatctaccgcccaatcaagtaggagaaatttgtgtt 1206 Query: 773 cgaggaccacacataatgcaagggtatttcaacaatgtagaggctactgaatttacaatc 832 ||||| ||| | ||||||||||||||||||||||||| | |||||||||||||||||| Sbjct: 1207 cgagggccaaatgtaatgcaagggtatttcaacaatgtgcaagctactgaatttacaatc 1266 Query: 833 aggcaaggatggttgcatactggtgatcttggatactttgatgaagaaggccagcttttt 892 | |||||| |||||||| |||||||||||||||||||| || | || ||||||||||||| Sbjct: 1267 aagcaagggtggttgcacactggtgatcttggatacttcgacggaggaggccagcttttt 1326 Query: 893 gtcgtcgatagactaaaagagctgattaagtacaaaggtttccagattgcacctgctgag 952 || || |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct: 1327 gttgttgatagacttaaagaactgattaagtacaaaggtttccagattgcacctgccgag 1386 Query: 953 cttgaaggattacttctatctcatccagagattctagacgccgtcgttatcccgttccct 1012 |||||||| ||||||||||||||||||||||||||||| || || ||||||||||| ||| Sbjct: 1387 cttgaagggttacttctatctcatccagagattctagatgctgttgttatcccgtttcct 1446 Query: 1013 gatgatgaagctggggaagttcctattgcctatgtggtgaggtcacctgccagttcatta 1072 |||| | |||||||||| ||||| ||||||||||| || ||||||||| ||||||||| Sbjct: 1447 gatgctaaagctggggaggttcccattgcctatgttgttcggtcacctgacagttcattg 1506 Query: 1073 accgaagtggacgtccaaaaatttat 1098 || ||||| || |||||||||||||| Sbjct: 1507 acagaagttgatgtccaaaaatttat 1532 Score = 48.1 bits (24), Expect = 0.088 Identities = 63/76 (82%) Strand = Plus / Plus Query: 1113 cgtactacaaaagactgaggcgggttaccttcgtggagagcgtgccaaaatcagccgcag 1172 |||||||||||||| ||| | | |||||||| |||| |||||||| |||||||| ||| Sbjct: 1583 cgtactacaaaagattgaagagagttacctttgtgggcagcgtgcccaaatcagcttcag 1642 Query: 1173 gcaagatcttgagaag 1188 | ||||| ||||||| Sbjct: 1643 gaaagattctgagaag 1658
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 400 bits (202), Expect = e-108 Identities = 358/410 (87%) Strand = Plus / Minus Query: 173 ctctactcctccggcacgacgggggagagcaagggcgtggtcctgacgcaccgcaacttc 232 |||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 2869045 ctctactcgtcgggcacgacgggggatagcaagggcgtcatcctgacgcaccgcaacttc 2868986 Query: 233 atcgcggcggcgacgatggtgacgtcggaccaggacgagcggggggagccgcccaacgtg 292 ||||| ||||||| ||||||||| || ||||| |||||||| ||||| |||||||||| Sbjct: 2868985 atcgccgcggcgaggatggtgacctccgaccaagacgagcgccgggaggggcccaacgtg 2868926 Query: 293 ttcctctgcttcctgcccatgttccacatcttcggcctctccgtcatcaccttcgcgcag 352 |||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||| Sbjct: 2868925 ttcctctgcttcctccccatgttccacatcttcggcctgtccgtcatcacgtacgcgcag 2868866 Query: 353 ctgcagcgcggcaacgccgtggtcgtcatgtcgggcttcgccatggactcggtgatgagg 412 ||||| ||||| |||||| | ||| ||||||| | |||| ||| |||| ||||| | Sbjct: 2868865 ctgcatcgcgggaacgccatcatcgccatgtcgcggttcgacatcaactccctgatggag 2868806 Query: 413 gccgtgcagcagcaccgggtgacgcacgtcttctgcgtgccgccggtgatgatcgcgctc 472 ||||||||| |||||| || |||||| | ||||||||||||||||| || ||||||||| Sbjct: 2868805 gccgtgcagaggcaccgcgtcacgcacctgttctgcgtgccgccggtcattatcgcgctc 2868746 Query: 473 gccaagcacgggcgggtcggcaagtacgacctcagctcgctcaagttcatcggctccggc 532 |||||||||||| || ||| |||||||| |||||||| ||||||||||||||||||||| Sbjct: 2868745 gccaagcacgggaaggccggtaagtacgatctcagctctctcaagttcatcggctccggc 2868686 Query: 533 gccgcgccgctcggcagggacgtcatggaggtggtggccaagaacttccc 582 |||||||||||||||| ||| || |||||||| ||||||||||| ||||| Sbjct: 2868685 gccgcgccgctcggcaaggatgtgatggaggtcgtggccaagaaattccc 2868636 Score = 176 bits (89), Expect = 1e-40 Identities = 131/145 (90%) Strand = Plus / Minus Query: 793 agggtatttcaacaatgtagaggctactgaatttacaatcaggcaaggatggttgcatac 852 |||||||||||||||||| | ||||||||||||||||||| |||||| |||||||| || Sbjct: 2866714 agggtatttcaacaatgtgcaagctactgaatttacaatcaagcaagggtggttgcacac 2866655 Query: 853 tggtgatcttggatactttgatgaagaaggccagctttttgtcgtcgatagactaaaaga 912 |||||||||||||||||| || | || ||||||||||||||| || |||||||| ||||| Sbjct: 2866654 tggtgatcttggatacttcgacggaggaggccagctttttgttgttgatagacttaaaga 2866595 Query: 913 gctgattaagtacaaaggtttccag 937 |||||||||||||||||||||||| Sbjct: 2866594 actgattaagtacaaaggtttccag 2866570 Score = 141 bits (71), Expect = 8e-30 Identities = 167/199 (83%) Strand = Plus / Minus Query: 597 ttcagggctatggtatgactgagacttgtgggatcatatcgcttgaatacccagaaaagg 656 ||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||| | Sbjct: 2867247 ttcagggttatggtatgactgagacttgtggaatcatatcgctcgagtacccagaaaaag 2867188 Query: 657 gacaggctcgtcaatttgggtcaaccggaacgcttgttgttggagttgaagcaaaagtta 716 ||||||||||| ||||||||||||| || |||||||| |||||||| ||||| || Sbjct: 2867187 gacaggctcgtgaatttgggtcaactggcacgcttgtctcaggagttgaggcaaagattg 2867128 Query: 717 tcgacgtagaaacgcaaaaacatctaccgccaagtcaactaggagaaatctgtatccgag 776 ||||| || | || ||||||||||||||| | |||| |||||||||| ||| | |||| Sbjct: 2867127 tcgacataaagacattaaaacatctaccgcccaatcaagtaggagaaatttgtgttcgag 2867068 Query: 777 gaccacacataatgcaagg 795 | ||| | |||||||||| Sbjct: 2867067 ggccaaatgtaatgcaagg 2867049 Score = 103 bits (52), Expect = 2e-18 Identities = 67/72 (93%) Strand = Plus / Minus Query: 936 agattgcacctgctgagcttgaaggattacttctatctcatccagagattctagacgccg 995 ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || | Sbjct: 2865840 agattgcacctgccgagcttgaagggttacttctatctcatccagagattctagatgctg 2865781 Query: 996 tcgttatcccgt 1007 | |||||||||| Sbjct: 2865780 ttgttatcccgt 2865769 Score = 81.8 bits (41), Expect = 6e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 1010 cctgatgatgaagctggggaagttcctattgcctatgtggtgaggtcacctgccagttca 1069 ||||||| | |||||||||| ||||| ||||||||||| || ||||||||| ||||||| Sbjct: 2865628 cctgatgctaaagctggggaggttcccattgcctatgttgttcggtcacctgacagttca 2865569 Query: 1070 ttaaccgaagtggacgtccaaaaatttat 1098 || || ||||| || |||||||||||||| Sbjct: 2865568 ttgacagaagttgatgtccaaaaatttat 2865540 Score = 48.1 bits (24), Expect = 0.088 Identities = 63/76 (82%) Strand = Plus / Minus Query: 1113 cgtactacaaaagactgaggcgggttaccttcgtggagagcgtgccaaaatcagccgcag 1172 |||||||||||||| ||| | | |||||||| |||| |||||||| |||||||| ||| Sbjct: 2865136 cgtactacaaaagattgaagagagttacctttgtgggcagcgtgcccaaatcagcttcag 2865077 Query: 1173 gcaagatcttgagaag 1188 | ||||| ||||||| Sbjct: 2865076 gaaagattctgagaag 2865061
>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15, complete sequence Length = 166282 Score = 400 bits (202), Expect = e-108 Identities = 358/410 (87%) Strand = Plus / Minus Query: 173 ctctactcctccggcacgacgggggagagcaagggcgtggtcctgacgcaccgcaacttc 232 |||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 6421 ctctactcgtcgggcacgacgggggatagcaagggcgtcatcctgacgcaccgcaacttc 6362 Query: 233 atcgcggcggcgacgatggtgacgtcggaccaggacgagcggggggagccgcccaacgtg 292 ||||| ||||||| ||||||||| || ||||| |||||||| ||||| |||||||||| Sbjct: 6361 atcgccgcggcgaggatggtgacctccgaccaagacgagcgccgggaggggcccaacgtg 6302 Query: 293 ttcctctgcttcctgcccatgttccacatcttcggcctctccgtcatcaccttcgcgcag 352 |||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||| Sbjct: 6301 ttcctctgcttcctccccatgttccacatcttcggcctgtccgtcatcacgtacgcgcag 6242 Query: 353 ctgcagcgcggcaacgccgtggtcgtcatgtcgggcttcgccatggactcggtgatgagg 412 ||||| ||||| |||||| | ||| ||||||| | |||| ||| |||| ||||| | Sbjct: 6241 ctgcatcgcgggaacgccatcatcgccatgtcgcggttcgacatcaactccctgatggag 6182 Query: 413 gccgtgcagcagcaccgggtgacgcacgtcttctgcgtgccgccggtgatgatcgcgctc 472 ||||||||| |||||| || |||||| | ||||||||||||||||| || ||||||||| Sbjct: 6181 gccgtgcagaggcaccgcgtcacgcacctgttctgcgtgccgccggtcattatcgcgctc 6122 Query: 473 gccaagcacgggcgggtcggcaagtacgacctcagctcgctcaagttcatcggctccggc 532 |||||||||||| || ||| |||||||| |||||||| ||||||||||||||||||||| Sbjct: 6121 gccaagcacgggaaggccggtaagtacgatctcagctctctcaagttcatcggctccggc 6062 Query: 533 gccgcgccgctcggcagggacgtcatggaggtggtggccaagaacttccc 582 |||||||||||||||| ||| || |||||||| ||||||||||| ||||| Sbjct: 6061 gccgcgccgctcggcaaggatgtgatggaggtcgtggccaagaaattccc 6012 Score = 176 bits (89), Expect = 1e-40 Identities = 131/145 (90%) Strand = Plus / Minus Query: 793 agggtatttcaacaatgtagaggctactgaatttacaatcaggcaaggatggttgcatac 852 |||||||||||||||||| | ||||||||||||||||||| |||||| |||||||| || Sbjct: 4090 agggtatttcaacaatgtgcaagctactgaatttacaatcaagcaagggtggttgcacac 4031 Query: 853 tggtgatcttggatactttgatgaagaaggccagctttttgtcgtcgatagactaaaaga 912 |||||||||||||||||| || | || ||||||||||||||| || |||||||| ||||| Sbjct: 4030 tggtgatcttggatacttcgacggaggaggccagctttttgttgttgatagacttaaaga 3971 Query: 913 gctgattaagtacaaaggtttccag 937 |||||||||||||||||||||||| Sbjct: 3970 actgattaagtacaaaggtttccag 3946 Score = 141 bits (71), Expect = 8e-30 Identities = 167/199 (83%) Strand = Plus / Minus Query: 597 ttcagggctatggtatgactgagacttgtgggatcatatcgcttgaatacccagaaaagg 656 ||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||| | Sbjct: 4623 ttcagggttatggtatgactgagacttgtggaatcatatcgctcgagtacccagaaaaag 4564 Query: 657 gacaggctcgtcaatttgggtcaaccggaacgcttgttgttggagttgaagcaaaagtta 716 ||||||||||| ||||||||||||| || |||||||| |||||||| ||||| || Sbjct: 4563 gacaggctcgtgaatttgggtcaactggcacgcttgtctcaggagttgaggcaaagattg 4504 Query: 717 tcgacgtagaaacgcaaaaacatctaccgccaagtcaactaggagaaatctgtatccgag 776 ||||| || | || ||||||||||||||| | |||| |||||||||| ||| | |||| Sbjct: 4503 tcgacataaagacattaaaacatctaccgcccaatcaagtaggagaaatttgtgttcgag 4444 Query: 777 gaccacacataatgcaagg 795 | ||| | |||||||||| Sbjct: 4443 ggccaaatgtaatgcaagg 4425 Score = 103 bits (52), Expect = 2e-18 Identities = 67/72 (93%) Strand = Plus / Minus Query: 936 agattgcacctgctgagcttgaaggattacttctatctcatccagagattctagacgccg 995 ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || | Sbjct: 3216 agattgcacctgccgagcttgaagggttacttctatctcatccagagattctagatgctg 3157 Query: 996 tcgttatcccgt 1007 | |||||||||| Sbjct: 3156 ttgttatcccgt 3145 Score = 81.8 bits (41), Expect = 6e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 1010 cctgatgatgaagctggggaagttcctattgcctatgtggtgaggtcacctgccagttca 1069 ||||||| | |||||||||| ||||| ||||||||||| || ||||||||| ||||||| Sbjct: 3004 cctgatgctaaagctggggaggttcccattgcctatgttgttcggtcacctgacagttca 2945 Query: 1070 ttaaccgaagtggacgtccaaaaatttat 1098 || || ||||| || |||||||||||||| Sbjct: 2944 ttgacagaagttgatgtccaaaaatttat 2916 Score = 48.1 bits (24), Expect = 0.088 Identities = 63/76 (82%) Strand = Plus / Minus Query: 1113 cgtactacaaaagactgaggcgggttaccttcgtggagagcgtgccaaaatcagccgcag 1172 |||||||||||||| ||| | | |||||||| |||| |||||||| |||||||| ||| Sbjct: 2512 cgtactacaaaagattgaagagagttacctttgtgggcagcgtgcccaaatcagcttcag 2453 Query: 1173 gcaagatcttgagaag 1188 | ||||| ||||||| Sbjct: 2452 gaaagattctgagaag 2437
>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence Length = 165395 Score = 400 bits (202), Expect = e-108 Identities = 358/410 (87%) Strand = Plus / Minus Query: 173 ctctactcctccggcacgacgggggagagcaagggcgtggtcctgacgcaccgcaacttc 232 |||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 140890 ctctactcgtcgggcacgacgggggatagcaagggcgtcatcctgacgcaccgcaacttc 140831 Query: 233 atcgcggcggcgacgatggtgacgtcggaccaggacgagcggggggagccgcccaacgtg 292 ||||| ||||||| ||||||||| || ||||| |||||||| ||||| |||||||||| Sbjct: 140830 atcgccgcggcgaggatggtgacctccgaccaagacgagcgccgggaggggcccaacgtg 140771 Query: 293 ttcctctgcttcctgcccatgttccacatcttcggcctctccgtcatcaccttcgcgcag 352 |||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||| Sbjct: 140770 ttcctctgcttcctccccatgttccacatcttcggcctgtccgtcatcacgtacgcgcag 140711 Query: 353 ctgcagcgcggcaacgccgtggtcgtcatgtcgggcttcgccatggactcggtgatgagg 412 ||||| ||||| |||||| | ||| ||||||| | |||| ||| |||| ||||| | Sbjct: 140710 ctgcatcgcgggaacgccatcatcgccatgtcgcggttcgacatcaactccctgatggag 140651 Query: 413 gccgtgcagcagcaccgggtgacgcacgtcttctgcgtgccgccggtgatgatcgcgctc 472 ||||||||| |||||| || |||||| | ||||||||||||||||| || ||||||||| Sbjct: 140650 gccgtgcagaggcaccgcgtcacgcacctgttctgcgtgccgccggtcattatcgcgctc 140591 Query: 473 gccaagcacgggcgggtcggcaagtacgacctcagctcgctcaagttcatcggctccggc 532 |||||||||||| || ||| |||||||| |||||||| ||||||||||||||||||||| Sbjct: 140590 gccaagcacgggaaggccggtaagtacgatctcagctctctcaagttcatcggctccggc 140531 Query: 533 gccgcgccgctcggcagggacgtcatggaggtggtggccaagaacttccc 582 |||||||||||||||| ||| || |||||||| ||||||||||| ||||| Sbjct: 140530 gccgcgccgctcggcaaggatgtgatggaggtcgtggccaagaaattccc 140481 Score = 176 bits (89), Expect = 1e-40 Identities = 131/145 (90%) Strand = Plus / Minus Query: 793 agggtatttcaacaatgtagaggctactgaatttacaatcaggcaaggatggttgcatac 852 |||||||||||||||||| | ||||||||||||||||||| |||||| |||||||| || Sbjct: 138559 agggtatttcaacaatgtgcaagctactgaatttacaatcaagcaagggtggttgcacac 138500 Query: 853 tggtgatcttggatactttgatgaagaaggccagctttttgtcgtcgatagactaaaaga 912 |||||||||||||||||| || | || ||||||||||||||| || |||||||| ||||| Sbjct: 138499 tggtgatcttggatacttcgacggaggaggccagctttttgttgttgatagacttaaaga 138440 Query: 913 gctgattaagtacaaaggtttccag 937 |||||||||||||||||||||||| Sbjct: 138439 actgattaagtacaaaggtttccag 138415 Score = 141 bits (71), Expect = 8e-30 Identities = 167/199 (83%) Strand = Plus / Minus Query: 597 ttcagggctatggtatgactgagacttgtgggatcatatcgcttgaatacccagaaaagg 656 ||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||| | Sbjct: 139092 ttcagggttatggtatgactgagacttgtggaatcatatcgctcgagtacccagaaaaag 139033 Query: 657 gacaggctcgtcaatttgggtcaaccggaacgcttgttgttggagttgaagcaaaagtta 716 ||||||||||| ||||||||||||| || |||||||| |||||||| ||||| || Sbjct: 139032 gacaggctcgtgaatttgggtcaactggcacgcttgtctcaggagttgaggcaaagattg 138973 Query: 717 tcgacgtagaaacgcaaaaacatctaccgccaagtcaactaggagaaatctgtatccgag 776 ||||| || | || ||||||||||||||| | |||| |||||||||| ||| | |||| Sbjct: 138972 tcgacataaagacattaaaacatctaccgcccaatcaagtaggagaaatttgtgttcgag 138913 Query: 777 gaccacacataatgcaagg 795 | ||| | |||||||||| Sbjct: 138912 ggccaaatgtaatgcaagg 138894 Score = 103 bits (52), Expect = 2e-18 Identities = 67/72 (93%) Strand = Plus / Minus Query: 936 agattgcacctgctgagcttgaaggattacttctatctcatccagagattctagacgccg 995 ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || | Sbjct: 137685 agattgcacctgccgagcttgaagggttacttctatctcatccagagattctagatgctg 137626 Query: 996 tcgttatcccgt 1007 | |||||||||| Sbjct: 137625 ttgttatcccgt 137614 Score = 81.8 bits (41), Expect = 6e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 1010 cctgatgatgaagctggggaagttcctattgcctatgtggtgaggtcacctgccagttca 1069 ||||||| | |||||||||| ||||| ||||||||||| || ||||||||| ||||||| Sbjct: 137473 cctgatgctaaagctggggaggttcccattgcctatgttgttcggtcacctgacagttca 137414 Query: 1070 ttaaccgaagtggacgtccaaaaatttat 1098 || || ||||| || |||||||||||||| Sbjct: 137413 ttgacagaagttgatgtccaaaaatttat 137385 Score = 48.1 bits (24), Expect = 0.088 Identities = 63/76 (82%) Strand = Plus / Minus Query: 1113 cgtactacaaaagactgaggcgggttaccttcgtggagagcgtgccaaaatcagccgcag 1172 |||||||||||||| ||| | | |||||||| |||| |||||||| |||||||| ||| Sbjct: 136981 cgtactacaaaagattgaagagagttacctttgtgggcagcgtgcccaaatcagcttcag 136922 Query: 1173 gcaagatcttgagaag 1188 | ||||| ||||||| Sbjct: 136921 gaaagattctgagaag 136906
>gb|AC145321.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094P07, complete sequence Length = 162311 Score = 224 bits (113), Expect = 7e-55 Identities = 227/265 (85%) Strand = Plus / Plus Query: 284 cccaacgtgttcctctgcttcctgcccatgttccacatcttcggcctctccgtcatcacc 343 |||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||| Sbjct: 67957 cccaacgtgttcctctacttcctccccatgttccacatcttcagcctctccgtcatcaca 68016 Query: 344 ttcgcgcagctgcagcgcggcaacgccgtggtcgtcatgtcgggcttcgccatggactcg 403 | |||||||||||||||||| |||||| | || ||||||| | |||| ||| |||| Sbjct: 68017 tacgcgcagctgcagcgcgggaacgccatcatctccatgtcgcggttcgacatcaactcc 68076 Query: 404 gtgatgagggccgtgcagcagcaccgggtgacgcacgtcttctgcgtgccgccggtgatg 463 ||||| ||| |||||| |||||| || |||||| | ||||||||||||||||| || Sbjct: 68077 ctgatggaggctgtgcagaggcaccgcgtcacgcacctgttctgcgtgccgccggtcatt 68136 Query: 464 atcgcgctcgccaagcacgggcgggtcggcaagtacgacctcagctcgctcaagttcatc 523 ||||||||| ||||||||||| ||| || ||||| || |||||||| |||||||| ||| Sbjct: 68137 atcgcgctcaccaagcacgggagggcaggtaagtatgatctcagctctctcaagttaatc 68196 Query: 524 ggctccggcgccgcgccgctcggca 548 ||||||||||||||||||||||||| Sbjct: 68197 ggctccggcgccgcgccgctcggca 68221
>gb|AC123518.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0088N01, complete sequence Length = 123954 Score = 224 bits (113), Expect = 7e-55 Identities = 227/265 (85%) Strand = Plus / Plus Query: 284 cccaacgtgttcctctgcttcctgcccatgttccacatcttcggcctctccgtcatcacc 343 |||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||| Sbjct: 120773 cccaacgtgttcctctacttcctccccatgttccacatcttcagcctctccgtcatcaca 120832 Query: 344 ttcgcgcagctgcagcgcggcaacgccgtggtcgtcatgtcgggcttcgccatggactcg 403 | |||||||||||||||||| |||||| | || ||||||| | |||| ||| |||| Sbjct: 120833 tacgcgcagctgcagcgcgggaacgccatcatctccatgtcgcggttcgacatcaactcc 120892 Query: 404 gtgatgagggccgtgcagcagcaccgggtgacgcacgtcttctgcgtgccgccggtgatg 463 ||||| ||| |||||| |||||| || |||||| | ||||||||||||||||| || Sbjct: 120893 ctgatggaggctgtgcagaggcaccgcgtcacgcacctgttctgcgtgccgccggtcatt 120952 Query: 464 atcgcgctcgccaagcacgggcgggtcggcaagtacgacctcagctcgctcaagttcatc 523 ||||||||| ||||||||||| ||| || ||||| || |||||||| |||||||| ||| Sbjct: 120953 atcgcgctcaccaagcacgggagggcaggtaagtatgatctcagctctctcaagttaatc 121012 Query: 524 ggctccggcgccgcgccgctcggca 548 ||||||||||||||||||||||||| Sbjct: 121013 ggctccggcgccgcgccgctcggca 121037
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 224 bits (113), Expect = 7e-55 Identities = 227/265 (85%) Strand = Plus / Minus Query: 284 cccaacgtgttcctctgcttcctgcccatgttccacatcttcggcctctccgtcatcacc 343 |||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||| Sbjct: 5229442 cccaacgtgttcctctacttcctccccatgttccacatcttcagcctctccgtcatcaca 5229383 Query: 344 ttcgcgcagctgcagcgcggcaacgccgtggtcgtcatgtcgggcttcgccatggactcg 403 | |||||||||||||||||| |||||| | || ||||||| | |||| ||| |||| Sbjct: 5229382 tacgcgcagctgcagcgcgggaacgccatcatctccatgtcgcggttcgacatcaactcc 5229323 Query: 404 gtgatgagggccgtgcagcagcaccgggtgacgcacgtcttctgcgtgccgccggtgatg 463 ||||| ||| |||||| |||||| || |||||| | ||||||||||||||||| || Sbjct: 5229322 ctgatggaggctgtgcagaggcaccgcgtcacgcacctgttctgcgtgccgccggtcatt 5229263 Query: 464 atcgcgctcgccaagcacgggcgggtcggcaagtacgacctcagctcgctcaagttcatc 523 ||||||||| ||||||||||| ||| || ||||| || |||||||| |||||||| ||| Sbjct: 5229262 atcgcgctcaccaagcacgggagggcaggtaagtatgatctcagctctctcaagttaatc 5229203 Query: 524 ggctccggcgccgcgccgctcggca 548 ||||||||||||||||||||||||| Sbjct: 5229202 ggctccggcgccgcgccgctcggca 5229178
>gb|BT013439.1| Lycopersicon esculentum clone 132080F, mRNA sequence Length = 1962 Score = 79.8 bits (40), Expect = 3e-11 Identities = 106/128 (82%) Strand = Plus / Plus Query: 908 aaagagctgattaagtacaaaggtttccagattgcacctgctgagcttgaaggattactt 967 |||||||| || |||||||||||||| ||| ||||||| || ||||||||||| ||||| Sbjct: 1371 aaagagctcatcaagtacaaaggttttcaggttgcaccagcagagcttgaaggtctactt 1430 Query: 968 ctatctcatccagagattctagacgccgtcgttatcccgttccctgatgatgaagctggg 1027 | |||||||| || || |||| || || ||||||||||| ||||||| ||| ||||| Sbjct: 1431 gtttctcatcctgaaatattagatgctgttgttatcccgtttcctgatgctgaggctggt 1490 Query: 1028 gaagttcc 1035 || ||||| Sbjct: 1491 gaggttcc 1498
>ref|NM_116755.4| Arabidopsis thaliana 4-coumarate-CoA ligase/ fatty-acyl-CoA synthase (AT4G05160) mRNA, complete cds Length = 1861 Score = 77.8 bits (39), Expect = 1e-10 Identities = 99/119 (83%) Strand = Plus / Plus Query: 923 tacaaaggtttccagattgcacctgctgagcttgaaggattacttctatctcatccagag 982 |||||||| |||||| |||| || ||||| || ||||| | ||| |||| ||||| || Sbjct: 1402 tacaaaggcttccaggttgctccagctgaactagaaggtcttcttgtatcacatcctgat 1461 Query: 983 attctagacgccgtcgttatcccgttccctgatgatgaagctggggaagttcctattgc 1041 || ||||| || ||||||||||||||||||||||| ||||| || |||||||| ||||| Sbjct: 1462 atactagatgctgtcgttatcccgttccctgatgaagaagcaggtgaagttccaattgc 1520 Score = 42.1 bits (21), Expect = 5.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 746 ccaagtcaactaggagaaatctgtatccgaggaccacacataatgcaagggta 798 |||| ||||| |||||||||||| | ||||||||| |||| ||| ||||||| Sbjct: 1222 ccaaatcaacaaggagaaatctgggttcgaggaccaaacatgatgaaagggta 1274
>gb|AY250839.1| Arabidopsis thaliana 4-coumarate-CoA ligase-like protein (At4g05160) mRNA, complete cds Length = 1635 Score = 77.8 bits (39), Expect = 1e-10 Identities = 99/119 (83%) Strand = Plus / Plus Query: 923 tacaaaggtttccagattgcacctgctgagcttgaaggattacttctatctcatccagag 982 |||||||| |||||| |||| || ||||| || ||||| | ||| |||| ||||| || Sbjct: 1336 tacaaaggcttccaggttgctccagctgaactagaaggtcttcttgtatcacatcctgat 1395 Query: 983 attctagacgccgtcgttatcccgttccctgatgatgaagctggggaagttcctattgc 1041 || ||||| || ||||||||||||||||||||||| ||||| || |||||||| ||||| Sbjct: 1396 atactagatgctgtcgttatcccgttccctgatgaagaagcaggtgaagttccaattgc 1454 Score = 42.1 bits (21), Expect = 5.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 746 ccaagtcaactaggagaaatctgtatccgaggaccacacataatgcaagggta 798 |||| ||||| |||||||||||| | ||||||||| |||| ||| ||||||| Sbjct: 1156 ccaaatcaacaaggagaaatctgggttcgaggaccaaacatgatgaaagggta 1208
>gb|AY122950.1| Arabidopsis thaliana putative 4-coumarate--CoA ligase (At4g05160) mRNA, complete cds Length = 1666 Score = 77.8 bits (39), Expect = 1e-10 Identities = 99/119 (83%) Strand = Plus / Plus Query: 923 tacaaaggtttccagattgcacctgctgagcttgaaggattacttctatctcatccagag 982 |||||||| |||||| |||| || ||||| || ||||| | ||| |||| ||||| || Sbjct: 1336 tacaaaggcttccaggttgctccagctgaactagaaggtcttcttgtatcacatcctgat 1395 Query: 983 attctagacgccgtcgttatcccgttccctgatgatgaagctggggaagttcctattgc 1041 || ||||| || ||||||||||||||||||||||| ||||| || |||||||| ||||| Sbjct: 1396 atactagatgctgtcgttatcccgttccctgatgaagaagcaggtgaagttccaattgc 1454 Score = 42.1 bits (21), Expect = 5.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 746 ccaagtcaactaggagaaatctgtatccgaggaccacacataatgcaagggta 798 |||| ||||| |||||||||||| | ||||||||| |||| ||| ||||||| Sbjct: 1156 ccaaatcaacaaggagaaatctgggttcgaggaccaaacatgatgaaagggta 1208
>gb|AY091079.1| Arabidopsis thaliana putative 4-coumarate--CoA ligase (At4g05160) mRNA, complete cds Length = 1788 Score = 77.8 bits (39), Expect = 1e-10 Identities = 99/119 (83%) Strand = Plus / Plus Query: 923 tacaaaggtttccagattgcacctgctgagcttgaaggattacttctatctcatccagag 982 |||||||| |||||| |||| || ||||| || ||||| | ||| |||| ||||| || Sbjct: 1378 tacaaaggcttccaggttgctccagctgaactagaaggtcttcttgtatcacatcctgat 1437 Query: 983 attctagacgccgtcgttatcccgttccctgatgatgaagctggggaagttcctattgc 1041 || ||||| || ||||||||||||||||||||||| ||||| || |||||||| ||||| Sbjct: 1438 atactagatgctgtcgttatcccgttccctgatgaagaagcaggtgaagttccaattgc 1496 Score = 42.1 bits (21), Expect = 5.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 746 ccaagtcaactaggagaaatctgtatccgaggaccacacataatgcaagggta 798 |||| ||||| |||||||||||| | ||||||||| |||| ||| ||||||| Sbjct: 1198 ccaaatcaacaaggagaaatctgggttcgaggaccaaacatgatgaaagggta 1250
>emb|CT029516.1| Poplar cDNA sequences Length = 821 Score = 73.8 bits (37), Expect = 2e-09 Identities = 85/101 (84%) Strand = Plus / Minus Query: 848 catactggtgatcttggatactttgatgaagaaggccagctttttgtcgtcgatagacta 907 |||||||| ||||||||||| |||||||| || || || |||||||| |||||| | | Sbjct: 323 catactggagatcttggatattttgatgatgatggacaactttttgtggtcgatcggatt 264 Query: 908 aaagagctgattaagtacaaaggtttccagattgcacctgc 948 |||||||| || ||||| |||||||| ||| |||||||||| Sbjct: 263 aaagagctcatcaagtataaaggttttcaggttgcacctgc 223
>emb|BX827081.1|CNS0A38R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB93ZB08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1821 Score = 63.9 bits (32), Expect = 1e-06 Identities = 50/56 (89%) Strand = Plus / Plus Query: 986 ctagacgccgtcgttatcccgttccctgatgatgaagctggggaagttcctattgc 1041 ||||| || ||||||||||||||||||||||| ||||| || |||||||| ||||| Sbjct: 1425 ctagatgctgtcgttatcccgttccctgatgaagaagcaggtgaagttccaattgc 1480
>dbj|AP004912.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT11L19, TM0070, complete sequence Length = 128164 Score = 56.0 bits (28), Expect = 4e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 599 cagggctatggtatgactgagacttgtgggat 630 ||||| |||||||||||||||||||||||||| Sbjct: 50615 cagggttatggtatgactgagacttgtgggat 50646
>gb|AF008183.1|AF008183 Populus x generosa strain H11 4-coumarate:CoA ligase 2 (4CL2) mRNA, complete cds Length = 1922 Score = 54.0 bits (27), Expect = 0.001 Identities = 98/121 (80%), Gaps = 3/121 (2%) Strand = Plus / Plus Query: 839 ggatggttgcatactggtgatcttggatactttgatgaagaaggccagctttttgtcgtc 898 ||||||||||| || |||||| |||||||| |||||||||| | | || ||| |||| Sbjct: 1268 ggatggttgcacacgggtgatattggatacattgatgaagatg---aactctttatcgtg 1324 Query: 899 gatagactaaaagagctgattaagtacaaaggtttccagattgcacctgctgagcttgaa 958 ||| | | ||||| |||| || |||||||||||||| | |||||||||||||||||| Sbjct: 1325 gatcgtttgaaagaattgatcaaatacaaaggtttccaagtagcacctgctgagcttgaa 1384 Query: 959 g 959 | Sbjct: 1385 g 1385
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 50.1 bits (25), Expect = 0.022 Identities = 43/49 (87%) Strand = Plus / Plus Query: 182 tccggcacgacgggggagagcaagggcgtggtcctgacgcaccgcaact 230 ||||||||||||||||| ||||||||| |||| ||||||||||||| Sbjct: 3467416 tccggcacgacgggggaccccaagggcgtcatcctcacgcaccgcaact 3467464
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 50.1 bits (25), Expect = 0.022 Identities = 49/57 (85%) Strand = Plus / Plus Query: 173 ctctactcctccggcacgacgggggagagcaagggcgtggtcctgacgcaccgcaac 229 |||||||| || || ||| ||||| ||||||||| ||||| ||||||||||||||| Sbjct: 2376486 ctctactcgtcggggacgtcggggaggagcaagggggtggtgctgacgcaccgcaac 2376542
>dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0025F03 Length = 138042 Score = 50.1 bits (25), Expect = 0.022 Identities = 49/57 (85%) Strand = Plus / Plus Query: 173 ctctactcctccggcacgacgggggagagcaagggcgtggtcctgacgcaccgcaac 229 |||||||| || || ||| ||||| ||||||||| ||||| ||||||||||||||| Sbjct: 52456 ctctactcgtcggggacgtcggggaggagcaagggggtggtgctgacgcaccgcaac 52512
>dbj|AP005542.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0473D02 Length = 146185 Score = 50.1 bits (25), Expect = 0.022 Identities = 49/57 (85%) Strand = Plus / Plus Query: 173 ctctactcctccggcacgacgggggagagcaagggcgtggtcctgacgcaccgcaac 229 |||||||| || || ||| ||||| ||||||||| ||||| ||||||||||||||| Sbjct: 123985 ctctactcgtcggggacgtcggggaggagcaagggggtggtgctgacgcaccgcaac 124041
>dbj|D43773.1|TOB4CCAL Nicotiana tabacum mRNA for 4-coumarate:coenzyme A ligase, complete cds Length = 1888 Score = 50.1 bits (25), Expect = 0.022 Identities = 43/49 (87%) Strand = Plus / Plus Query: 911 gagctgattaagtacaaaggtttccagattgcacctgctgagcttgaag 959 ||||||||||| |||||||| || || |||||||||||||||| |||| Sbjct: 1344 gagctgattaaatacaaaggatttcaagttgcacctgctgagctcgaag 1392
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 48.1 bits (24), Expect = 0.088 Identities = 27/28 (96%) Strand = Plus / Minus Query: 337 catcaccttcgcgcagctgcagcgcggc 364 ||||||||||||||||||||| |||||| Sbjct: 658129 catcaccttcgcgcagctgcaacgcggc 658102
>dbj|AB196456.1| Luciola cruciata mRNA for hypothetical protein, complete cds, clone:LCL2 Length = 2354 Score = 48.1 bits (24), Expect = 0.088 Identities = 93/116 (80%) Strand = Plus / Plus Query: 839 ggatggttgcatactggtgatcttggatactttgatgaagaaggccagctttttgtcgtc 898 |||||||||||||||||||| |||| || | ||||||||| | | ||| | | || Sbjct: 1382 ggatggttgcatactggtgacgttggctattatgatgaagatgaatatttttatatagtt 1441 Query: 899 gatagactaaaagagctgattaagtacaaaggtttccagattgcacctgctgagct 954 |||||| |||||||||| || || |||||||||| ||| ||||||| |||||||| Sbjct: 1442 gatagaataaaagagcttataaaatacaaaggttaccaagttgcaccagctgagct 1497
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome Length = 6537648 Score = 46.1 bits (23), Expect = 0.35 Identities = 38/43 (88%) Strand = Plus / Minus Query: 175 ctactcctccggcacgacgggggagagcaagggcgtggtcctg 217 |||| |||||||||| |||||||| |||||||||||||||| Sbjct: 3199515 ctacacctccggcaccacgggggatcccaagggcgtggtcctg 3199473
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Plus Query: 173 ctctactcctccggcacgacggg 195 ||||||||||||||||||||||| Sbjct: 6164845 ctctactcctccggcacgacggg 6164867
>gb|AC189346.1| Brassica rapa subsp. pekinensis clone KBrB042N05, complete sequence Length = 96650 Score = 46.1 bits (23), Expect = 0.35 Identities = 71/87 (81%) Strand = Plus / Minus Query: 152 cagggcgacacggccgggttgctctactcctccggcacgacgggggagagcaagggcgtg 211 |||| ||||||||| | |||||| ||||| || |||||||||||| | ||||| || || Sbjct: 57137 caggacgacacggcggcgttgctatactcgtcaggcacgacggggaaaagcaaaggagta 57078 Query: 212 gtcctgacgcaccgcaacttcatcgcg 238 | | |||||||||||||| |||||| Sbjct: 57077 atgataacgcaccgcaacttaatcgcg 57051
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 46.1 bits (23), Expect = 0.35 Identities = 32/35 (91%) Strand = Plus / Minus Query: 202 caagggcgtggtcctgacgcaccgcaacttcatcg 236 |||||||||||||||| || |||||||| |||||| Sbjct: 899404 caagggcgtggtcctgtcgaaccgcaacatcatcg 899370
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 46.1 bits (23), Expect = 0.35 Identities = 29/31 (93%) Strand = Plus / Minus Query: 199 gagcaagggcgtggtcctgacgcaccgcaac 229 ||||||||||||||| |||||||||||||| Sbjct: 22565567 gagcaagggcgtggtggtgacgcaccgcaac 22565537 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 306 tgcccatgttccacatcttcggcctctcc 334 |||||||||||||| ||| |||||||||| Sbjct: 22565451 tgcccatgttccacgtctacggcctctcc 22565423
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 46.1 bits (23), Expect = 0.35 Identities = 29/31 (93%) Strand = Plus / Minus Query: 199 gagcaagggcgtggtcctgacgcaccgcaac 229 ||||||||||||||| |||||||||||||| Sbjct: 20236 gagcaagggcgtggtggtgacgcaccgcaac 20206 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 306 tgcccatgttccacatcttcggcctctcc 334 |||||||||||||| ||| |||||||||| Sbjct: 20120 tgcccatgttccacgtctacggcctctcc 20092
>gb|AF241171.1|AF241171 Pseudomonas aeruginosa pathogenicity island PAGI-1 gene, complete sequence Length = 51300 Score = 46.1 bits (23), Expect = 0.35 Identities = 38/43 (88%) Strand = Plus / Plus Query: 175 ctactcctccggcacgacgggggagagcaagggcgtggtcctg 217 |||| |||||||||| |||||||| |||||||||||||||| Sbjct: 11974 ctacacctccggcaccacgggggatcccaagggcgtggtcctg 12016
>gb|AF008184.1|AF008184 Populus x generosa strain H11 4-coumarate:CoA ligase 1 (4CL1) mRNA, complete cds Length = 2042 Score = 46.1 bits (23), Expect = 0.35 Identities = 62/75 (82%) Strand = Plus / Plus Query: 885 agctttttgtcgtcgatagactaaaagagctgattaagtacaaaggtttccagattgcac 944 |||| ||| |||| ||| |||| ||||| ||||||| ||||| ||||| || | |||| Sbjct: 1320 agctctttatcgttgatcgactgaaagaattgattaaatacaagggttttcaagtagcac 1379 Query: 945 ctgctgagcttgaag 959 ||||||||||||||| Sbjct: 1380 ctgctgagcttgaag 1394
>gb|AF052221.1|AF052221 Lolium perenne 4-coumarate--CoA ligase 4CL1 mRNA, complete cds Length = 2284 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Plus Query: 526 ctccggcgccgcgccgctcggca 548 ||||||||||||||||||||||| Sbjct: 1324 ctccggcgccgcgccgctcggca 1346 Score = 42.1 bits (21), Expect = 5.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 175 ctactcctccggcacgacgggggagagcaagggcgtggtcctgacgcac 223 |||||| || |||||||||||| | |||||||||||| ||||||||| Sbjct: 964 ctactcgtcgggcacgacggggctgcccaagggcgtggtgctgacgcac 1012
>ref|XM_312456.2| Anopheles gambiae str. PEST ENSANGP00000022086 (ENSANGG00000019597), partial mRNA Length = 2649 Score = 46.1 bits (23), Expect = 0.35 Identities = 26/27 (96%) Strand = Plus / Minus Query: 543 tcggcagggacgtcatggaggtggtgg 569 |||||| |||||||||||||||||||| Sbjct: 145 tcggcacggacgtcatggaggtggtgg 119
>ref|XM_563695.1| Anopheles gambiae str. PEST ENSANGP00000029144 (ENSANGG00000019597), partial mRNA Length = 2867 Score = 46.1 bits (23), Expect = 0.35 Identities = 26/27 (96%) Strand = Plus / Minus Query: 543 tcggcagggacgtcatggaggtggtgg 569 |||||| |||||||||||||||||||| Sbjct: 145 tcggcacggacgtcatggaggtggtgg 119
>emb|CT029646.1| Poplar cDNA sequences Length = 600 Score = 44.1 bits (22), Expect = 1.4 Identities = 40/46 (86%) Strand = Plus / Plus Query: 1009 ccctgatgatgaagctggggaagttcctattgcctatgtggtgagg 1054 ||||||||| || || |||||| | ||||| ||||||||||||||| Sbjct: 17 ccctgatgaagaggcaggggaaatacctatggcctatgtggtgagg 62
>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence Length = 27905053 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1378 cgaaaccattgttttaaattga 1399 |||||||||||||||||||||| Sbjct: 26839329 cgaaaccattgttttaaattga 26839308
>gb|AY812766.1| Schistosoma japonicum SJCHGC06080 protein mRNA, complete cds Length = 835 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 839 ggatggttgcatactggtgatcttgg 864 ||||||||||||||||||||| |||| Sbjct: 119 ggatggttgcatactggtgatattgg 144
>gb|AC007975.7|AC007975 Drosophila melanogaster, chromosome 3R, region 100A-100B, BAC clone BACR06P08, complete sequence Length = 180630 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1378 cgaaaccattgttttaaattga 1399 |||||||||||||||||||||| Sbjct: 112306 cgaaaccattgttttaaattga 112285
>gb|AF239687.1|AF239687 Rubus idaeus 4-coumarate:coA ligase 1 mRNA, complete cds Length = 1849 Score = 44.1 bits (22), Expect = 1.4 Identities = 46/54 (85%) Strand = Plus / Plus Query: 906 taaaagagctgattaagtacaaaggtttccagattgcacctgctgagcttgaag 959 |||| ||||| || || |||||||| || ||| |||| |||||||||||||||| Sbjct: 1331 taaaggagctcatcaaatacaaaggctttcaggttgcccctgctgagcttgaag 1384
>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome Length = 6988209 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 450 tgccgccggtgatgatcgcgc 470 ||||||||||||||||||||| Sbjct: 2982061 tgccgccggtgatgatcgcgc 2982081
>ref|XM_781888.2| PREDICTED: Strongylocentrotus purpuratus similar to 4-coumarate:CoA ligase (LOC581911), mRNA Length = 1506 Score = 42.1 bits (21), Expect = 5.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 894 tcgtcgatagactaaaagagctgattaagtacaaaggtttccagattgcacctgctgagc 953 |||| ||||| || ||||| || || ||||||||||||| ||| |||| |||||||||| Sbjct: 1172 tcgtggataggctcaaagaacttatcaagtacaaaggttatcaggttgctcctgctgagc 1231 Query: 954 t 954 | Sbjct: 1232 t 1232
>ref|XM_001200865.1| PREDICTED: Strongylocentrotus purpuratus similar to 4-coumarate:CoA ligase (LOC581911), mRNA Length = 1506 Score = 42.1 bits (21), Expect = 5.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 894 tcgtcgatagactaaaagagctgattaagtacaaaggtttccagattgcacctgctgagc 953 |||| ||||| || ||||| || || ||||||||||||| ||| |||| |||||||||| Sbjct: 1172 tcgtggataggctcaaagaacttatcaagtacaaaggttatcaggttgctcctgctgagc 1231 Query: 954 t 954 | Sbjct: 1232 t 1232
>gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete sequence Length = 906719 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 ggcgacgatggtgacgtcgga 261 ||||||||||||||||||||| Sbjct: 567950 ggcgacgatggtgacgtcgga 567970
>gb|AC144503.17| Medicago truncatula clone mth2-13f22, complete sequence Length = 116810 Score = 42.1 bits (21), Expect = 5.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 899 gatagactaaaagagctgattaagtacaaaggtttccagattgcacctgctgagcttgaa 958 |||||||| ||||| ||||||| ||||||||||| || |||| || ||||| |||||| Sbjct: 31313 gatagacttaaagaattgattaaatacaaaggttttcaagttgctccagctgaacttgaa 31372 Query: 959 g 959 | Sbjct: 31373 g 31373
>gb|AC126790.38| Medicago truncatula clone mth2-10d14, complete sequence Length = 127447 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1338 taactctcaatctcaacattg 1358 ||||||||||||||||||||| Sbjct: 124741 taactctcaatctcaacattg 124721
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 523 cggctccggcgccgcgccgctcggc 547 ||||||||||||||||| ||||||| Sbjct: 2443292 cggctccggcgccgcgctgctcggc 2443316
>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 Length = 2005935 Score = 42.1 bits (21), Expect = 5.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 914 ctgattaagtacaaaggtttccagattgcacctgctgagct 954 |||||| |||| |||||||||||| | || ||||||||||| Sbjct: 612691 ctgattgagtataaaggtttccaggtggctcctgctgagct 612731
>ref|XM_811261.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506743.220) partial mRNA Length = 1001 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 actcctccggcacgacggggg 197 ||||||||||||||||||||| Sbjct: 596 actcctccggcacgacggggg 616
>ref|XM_800040.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510601.30) partial mRNA Length = 2475 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 actcctccggcacgacggggg 197 ||||||||||||||||||||| Sbjct: 2082 actcctccggcacgacggggg 2102
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 305 ctgcccatgttccacatcttcggcctctc 333 ||||||||||||||||| |||||| |||| Sbjct: 26557008 ctgcccatgttccacatgttcggcttctc 26556980
>dbj|AB166768.1| Scutellaria baicalensis Sb4CL2 mRNA for 4-coumarate: CoA ligase, complete cds Length = 1805 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 tactcctccggcacgacgggg 196 ||||||||||||||||||||| Sbjct: 575 tactcctccggcacgacgggg 595
>dbj|AB166767.1| Scutellaria baicalensis Sb4CL1 mRNA for 4-coumarate: CoA ligase, complete cds Length = 1808 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 tactcctccggcacgacgggg 196 ||||||||||||||||||||| Sbjct: 615 tactcctccggcacgacgggg 635
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 523 cggctccggcgccgcgccgctcggc 547 ||||||||||||||||| ||||||| Sbjct: 623279 cggctccggcgccgcgctgctcggc 623303
>gb|AC087091.2| Homo sapiens chromosome 3 clone RP11-605M1 map 3p, complete sequence Length = 153013 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 806 aatgtagaggctactgaattt 826 ||||||||||||||||||||| Sbjct: 2837 aatgtagaggctactgaattt 2817
>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1340_C08 Length = 192167 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 305 ctgcccatgttccacatcttcggcctctc 333 ||||||||||||||||| |||||| |||| Sbjct: 102279 ctgcccatgttccacatgttcggcttctc 102251
>gb|AC122686.6| Homo sapiens 12 BAC RP11-295J2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121995 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 ccacagccctcctctcctcct 50 ||||||||||||||||||||| Sbjct: 77116 ccacagccctcctctcctcct 77136
>ref|XM_568096.1| Cryptococcus neoformans var. neoformans JEC21 pyruvate dehydrogenase e1 component beta subunit, mitochondrial precursor (CNL05600) partial mRNA Length = 1348 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 ggcgacgatggtgacgtcgga 261 ||||||||||||||||||||| Sbjct: 834 ggcgacgatggtgacgtcgga 814
>gb|AC127020.16| Medicago truncatula clone mth2-9p1, complete sequence Length = 127642 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1338 taactctcaatctcaacattg 1358 ||||||||||||||||||||| Sbjct: 1378 taactctcaatctcaacattg 1398
>gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete sequence Length = 138465 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1338 taactctcaatctcaacattg 1358 ||||||||||||||||||||| Sbjct: 13414 taactctcaatctcaacattg 13394
>gb|AC104928.8| Mus musculus chromosome 8, clone RP24-111K8, complete sequence Length = 177873 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 cctcctctcctcctcacccat 57 ||||||||||||||||||||| Sbjct: 109960 cctcctctcctcctcacccat 109940
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 523 cggctccggcgccgcgccgctcggc 547 ||||||||||||||||| ||||||| Sbjct: 2385446 cggctccggcgccgcgctgctcggc 2385422
>emb|AL670544.7| Mouse DNA sequence from clone RP23-16G8 on chromosome X, complete sequence Length = 236946 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 accacagccctcctctcctcc 49 ||||||||||||||||||||| Sbjct: 205436 accacagccctcctctcctcc 205456
>gb|AC026187.4| Homo sapiens chromosome 3 clone RP11-306H5 map 3p, complete sequence Length = 184087 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 806 aatgtagaggctactgaattt 826 ||||||||||||||||||||| Sbjct: 18848 aatgtagaggctactgaattt 18868 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 221,738,731 Number of extensions: 11704626 Number of successful extensions: 236927 Number of sequences better than 10.0: 64 Number of HSP's gapped: 236923 Number of HSP's successfully gapped: 93 Length of query: 1435 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1412 Effective length of database: 18,503,978,556 Effective search space: 26127617721072 Effective search space used: 26127617721072 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
