ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf35a24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CT831447.1| Oryza sativa (indica cultivar-group) cDNA clone:... 50 0.012
2ref|NM_001070764.1| Oryza sativa (japonica cultivar-group) Os10g... 50 0.012
3gb|AC090488.3| Genomic sequence for Oryza sativa, Nipponbare str... 50 0.012
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.012
5dbj|AK107891.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.012
6emb|AM236080.1| Rhizobium leguminosarum bv. viciae chromosome co... 48 0.046
7emb|CR385081.7| Zebrafish DNA sequence from clone CH211-59O9 in ... 46 0.18
8gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, comple... 44 0.72
9gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, comple... 44 0.72
10gb|AY022889.1| Oryza sativa microsatellite MRG5214 containing (C... 42 2.8
11gb|AY022820.1| Oryza sativa microsatellite MRG5145 containing (C... 42 2.8
12gb|AC126807.4| Mus musculus BAC clone RP23-306D4 from chromosome... 42 2.8
13dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 42 2.8
14gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 42 2.8
15dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.8
16dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.8
17gb|AF283880.1|AF283880 Raymunida elegantissima REL6 cytochrome o... 42 2.8
18gb|AF283879.1|AF283879 Raymunida elegantissima REL5 cytochrome o... 42 2.8
19gb|AF283878.1|AF283878 Raymunida elegantissima REL4 cytochrome o... 42 2.8
20gb|AF283877.1|AF283877 Raymunida elegantissima REL3 cytochrome o... 42 2.8
21gb|AF283876.1|AF283876 Raymunida elegantissima REL2 cytochrome o... 42 2.8
22gb|AF283875.1|AF283875 Raymunida elegantissima REL1 cytochrome o... 42 2.8
23dbj|AP003868.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.8
24dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.8
25gb|AC131005.3| Homo sapiens 3 BAC RP11-88K11 (Roswell Park Cance... 42 2.8
26emb|BX005302.8| Zebrafish DNA sequence from clone DKEY-237I15 in... 42 2.8
27emb|AL954193.12| Mouse DNA sequence from clone RP23-130G4 on chr... 42 2.8
28emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete ... 42 2.8 
>emb|CT831447.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA052M07, full
           insert sequence
          Length = 657
 Score = 50.1 bits (25), Expect = 0.012
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 391 tcaaggtcgccgagatggacctcccctgcatga 423
           ||||| ||||||| |||||||||||||||||||
Sbjct: 382 tcaagatcgccgacatggacctcccctgcatga 414
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>ref|NM_001070764.1| Oryza sativa (japonica cultivar-group) Os10g0169200 (Os10g0169200)
           mRNA, partial cds
          Length = 491

 Score = 50.1 bits (25), Expect = 0.012
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 391 tcaaggtcgccgagatggacctcccctgcatga 423
           ||||| ||||||| |||||||||||||||||||
Sbjct: 239 tcaagatcgccgacatggacctcccctgcatga 271
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>gb|AC090488.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0081F12 from chromosome 10, complete sequence
          Length = 128388

 Score = 50.1 bits (25), Expect = 0.012
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 391   tcaaggtcgccgagatggacctcccctgcatga 423
             ||||| ||||||| |||||||||||||||||||
Sbjct: 70195 tcaagatcgccgacatggacctcccctgcatga 70227
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.012
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                
Query: 391     tcaaggtcgccgagatggacctcccctgcatga 423
               ||||| ||||||| |||||||||||||||||||
Sbjct: 4408587 tcaagatcgccgacatggacctcccctgcatga 4408619
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>dbj|AK107891.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E07, full
           insert sequence
          Length = 515

 Score = 50.1 bits (25), Expect = 0.012
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 391 tcaaggtcgccgagatggacctcccctgcatga 423
           ||||| ||||||| |||||||||||||||||||
Sbjct: 240 tcaagatcgccgacatggacctcccctgcatga 272
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>emb|AM236080.1| Rhizobium leguminosarum bv. viciae chromosome complete genome, strain 3841
          Length = 5057142

 Score = 48.1 bits (24), Expect = 0.046
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 358     ccgaccaccactgccatggcgccg 381
               ||||||||||||||||||||||||
Sbjct: 3052055 ccgaccaccactgccatggcgccg 3052032
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>emb|CR385081.7| Zebrafish DNA sequence from clone CH211-59O9 in linkage group 25,
             complete sequence
          Length = 182806

 Score = 46.1 bits (23), Expect = 0.18
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 78    ggtttgtgtattcccccactagctagc 104
             |||||||| ||||||||||||||||||
Sbjct: 16212 ggtttgtgaattcccccactagctagc 16238
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>gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, complete genome
          Length = 156789

 Score = 44.1 bits (22), Expect = 0.72
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 176    gctcatggcgacggcggcggcg 197
              ||||||||||||||||||||||
Sbjct: 129995 gctcatggcgacggcggcggcg 130016



 Score = 44.1 bits (22), Expect = 0.72
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 176    gctcatggcgacggcggcggcg 197
              ||||||||||||||||||||||
Sbjct: 152429 gctcatggcgacggcggcggcg 152408
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>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome
          Length = 156487

 Score = 44.1 bits (22), Expect = 0.72
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 176    gctcatggcgacggcggcggcg 197
              ||||||||||||||||||||||
Sbjct: 131050 gctcatggcgacggcggcggcg 131071



 Score = 44.1 bits (22), Expect = 0.72
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 176    gctcatggcgacggcggcggcg 197
              ||||||||||||||||||||||
Sbjct: 152253 gctcatggcgacggcggcggcg 152232
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>gb|AY022889.1| Oryza sativa microsatellite MRG5214 containing (CGG)X9, genomic
           sequence
          Length = 227

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 177 ctcatggcgacggcggcggcg 197
           |||||||||||||||||||||
Sbjct: 91  ctcatggcgacggcggcggcg 111
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>gb|AY022820.1| Oryza sativa microsatellite MRG5145 containing (CGC)X9, genomic
           sequence
          Length = 227

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 177 ctcatggcgacggcggcggcg 197
           |||||||||||||||||||||
Sbjct: 139 ctcatggcgacggcggcggcg 119
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>gb|AC126807.4| Mus musculus BAC clone RP23-306D4 from chromosome 18, complete sequence
          Length = 244566

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 325    aggtggagcgggaggtggaga 345
              |||||||||||||||||||||
Sbjct: 177964 aggtggagcgggaggtggaga 177944
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 323    cgaggtggagcgggaggtggagatc 347
              |||||||||||||| ||||||||||
Sbjct: 870255 cgaggtggagcgggcggtggagatc 870279
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 455     atggccttggccgcctgcgtc 475
               |||||||||||||||||||||
Sbjct: 1331762 atggccttggccgcctgcgtc 1331782
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 181      tggcgacggcggcggcgtacg 201
                |||||||||||||||||||||
Sbjct: 20906116 tggcgacggcggcggcgtacg 20906096
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 177      ctcatggcgacggcggcggcg 197
                |||||||||||||||||||||
Sbjct: 26962090 ctcatggcgacggcggcggcg 26962070
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>gb|AF283880.1|AF283880 Raymunida elegantissima REL6 cytochrome oxidase subunit I (COI)
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 657

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 331 agcgggaggtggagatccagt 351
           |||||||||||||||||||||
Sbjct: 618 agcgggaggtggagatccagt 638
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>gb|AF283879.1|AF283879 Raymunida elegantissima REL5 cytochrome oxidase subunit I (COI)
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 657

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 331 agcgggaggtggagatccagt 351
           |||||||||||||||||||||
Sbjct: 618 agcgggaggtggagatccagt 638
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>gb|AF283878.1|AF283878 Raymunida elegantissima REL4 cytochrome oxidase subunit I (COI)
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 657

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 331 agcgggaggtggagatccagt 351
           |||||||||||||||||||||
Sbjct: 618 agcgggaggtggagatccagt 638
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>gb|AF283877.1|AF283877 Raymunida elegantissima REL3 cytochrome oxidase subunit I (COI)
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 657

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 331 agcgggaggtggagatccagt 351
           |||||||||||||||||||||
Sbjct: 618 agcgggaggtggagatccagt 638
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>gb|AF283876.1|AF283876 Raymunida elegantissima REL2 cytochrome oxidase subunit I (COI)
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 657

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 331 agcgggaggtggagatccagt 351
           |||||||||||||||||||||
Sbjct: 618 agcgggaggtggagatccagt 638
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>gb|AF283875.1|AF283875 Raymunida elegantissima REL1 cytochrome oxidase subunit I (COI)
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 657

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 331 agcgggaggtggagatccagt 351
           |||||||||||||||||||||
Sbjct: 618 agcgggaggtggagatccagt 638
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>dbj|AP003868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1111_B08
          Length = 131184

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   tggcgacggcggcggcgtacg 201
             |||||||||||||||||||||
Sbjct: 84417 tggcgacggcggcggcgtacg 84397
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>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0065C04
          Length = 165270

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 177   ctcatggcgacggcggcggcg 197
             |||||||||||||||||||||
Sbjct: 85851 ctcatggcgacggcggcggcg 85831
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>gb|AC131005.3| Homo sapiens 3 BAC RP11-88K11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 191231

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 623    tcatgtaaactactcctatatgatg 647
              |||||||||||||||||| ||||||
Sbjct: 187676 tcatgtaaactactcctaaatgatg 187652
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>emb|BX005302.8| Zebrafish DNA sequence from clone DKEY-237I15 in linkage group 21,
             complete sequence
          Length = 131139

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 686   atacatttctatcatatataa 706
             |||||||||||||||||||||
Sbjct: 56471 atacatttctatcatatataa 56451
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>emb|AL954193.12| Mouse DNA sequence from clone RP23-130G4 on chromosome X, complete
             sequence
          Length = 52879

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 690   atttctatcatatataaaaga 710
             |||||||||||||||||||||
Sbjct: 15595 atttctatcatatataaaaga 15575
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>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29
          Length = 303450

 Score = 42.1 bits (21), Expect = 2.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 183    gcgacggcggcggcgtacgcg 203
              |||||||||||||||||||||
Sbjct: 301221 gcgacggcggcggcgtacgcg 301201


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 118,476,541
Number of extensions: 6797230
Number of successful extensions: 152068
Number of sequences better than 10.0: 28
Number of HSP's gapped: 152068
Number of HSP's successfully gapped: 30
Length of query: 753
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 731
Effective length of database: 18,508,616,841
Effective search space: 13529798910771
Effective search space used: 13529798910771
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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