ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf31l17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os02g15430:12002.t01336:unspliced-genomic conserved hypo... 32 1.8
2LOC_Os01g02180:12001.t00113:unspliced-genomic expressed protein 31 3.3
3LOC_Os07g42440:12007.t03896:unspliced-genomic hydroxyacid ox... 31 4.5
4LOC_Os06g05950:12006.t00481:unspliced-genomic expressed protein 31 4.5
5LOC_Os01g63290:12001.t05698:unspliced-genomic sialin, putati... 31 4.5
6LOC_Os02g47400:12002.t04324:unspliced-genomic carboxylic est... 30 6.2
7LOC_Os05g48690:12005.t04303:unspliced-genomic 6b-interacting... 26 7.8
8LOC_Os12g03730:12012.t00265:unspliced-genomic metal ion bind... 30 8.6
9LOC_Os11g03910:12011.t00281:unspliced-genomic metal ion bind... 30 8.6
10LOC_Os05g48520:12005.t04286:unspliced-genomic glyoxal oxidas... 30 8.6
11LOC_Os05g48510:12005.t04285:unspliced-genomic phenylalanyl-t... 30 8.6
12LOC_Os05g46030:12005.t04091:unspliced-genomic myosin head fa... 30 8.6
13LOC_Os02g49930:12002.t04577:unspliced-genomic retrotransposo... 30 8.6

>LOC_Os02g15430:12002.t01336:unspliced-genomic conserved hypothetical protein|
          Length = 4525
 Score = 32.2 bits (64), Expect = 1.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1 / -2

                                 
Query: 238  HLQPRHVNSNPQTFLTCPFSN 300
            H+ PRH+ +N  +  TCPF+N
Sbjct: 3015 HVTPRHLRTNKVSCSTCPFTN 2953



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>LOC_Os01g02180:12001.t00113:unspliced-genomic expressed protein|
          Length = 3682

 Score = 31.3 bits (62), Expect = 3.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1 / -3

                                     
Query: 241  LQPRHVNSNPQTFLTCPFSNHMCFL 315
            + P++   N    + CPF+N +CF+
Sbjct: 2165 VNPKNKRKNSSNLIPCPFNNFLCFI 2091



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>LOC_Os07g42440:12007.t03896:unspliced-genomic hydroxyacid oxidase 1, putative, expressed|
          Length = 5526

 Score = 30.9 bits (61), Expect = 4.5
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -2 / -3

                              
Query: 310  NTYDY*TDTLGTFEGSNL 257
            NTY +* DTL  FEGSNL
Sbjct: 1144 NTYIF*VDTLVDFEGSNL 1091



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>LOC_Os06g05950:12006.t00481:unspliced-genomic expressed protein|
          Length = 2413

 Score = 30.9 bits (61), Expect = 4.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1 / -3

                               
Query: 250  RHVNSNPQTFLTCPFSNHM 306
            R VN +P T+L+CPF N M
Sbjct: 1319 RVVNPSPATYLSCPFGNCM 1263



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>LOC_Os01g63290:12001.t05698:unspliced-genomic sialin, putative, expressed|
          Length = 8085

 Score = 30.9 bits (61), Expect = 4.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3 / +1

                                  
Query: 135  LDTHALASHVHTCKCNLKWIEL 70
            L++H+L  H+  CKC+  W+ L
Sbjct: 7756 LNSHSLIGHLRLCKCHNMWMAL 7821



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>LOC_Os02g47400:12002.t04324:unspliced-genomic carboxylic ester hydrolase, putative, expressed|
          Length = 3837

 Score = 30.4 bits (60), Expect = 6.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1 / -1

                                        
Query: 118  KCMSIQATCFPRVLKCFFFSKRVT*NVL 201
            K  + +ATCF +V KC   SK V *N L
Sbjct: 2316 KSTAFKATCF*QVFKCNLLSKFVL*NCL 2233



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>LOC_Os05g48690:12005.t04303:unspliced-genomic 6b-interacting protein 1, putative, expressed|
          Length = 3446

 Score = 26.3 bits (51), Expect(2) = 7.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3 / -2

                                       
Query: 96   KCNLKWIELGRSLDN*LVWSKMSSWSR 16
            KCN+K + +   L   ++W    SW R
Sbjct: 1906 KCNVKLLTIEIQLHTGIIWGD*KSWPR 1826



 Score = 24.0 bits (46), Expect(2) = 7.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3 / -1

                                  
Query: 231  VFPWRGLPRGQNISSNPFRKKK 166
            VFPW   P  +  + N  +KKK
Sbjct: 3062 VFPWSARPSNELHTDNLHQKKK 2997



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>LOC_Os12g03730:12012.t00265:unspliced-genomic metal ion binding protein, putative|
          Length = 6284

 Score = 29.9 bits (59), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3 / -2

                                      
Query: 135  LDTHALASHVHTCKCNLKWIELGRSL 58
            L   AL  H+H+C C+L +++   SL
Sbjct: 2509 LKQKALVYHLHSCSCHLDYLQRNHSL 2432



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>LOC_Os11g03910:12011.t00281:unspliced-genomic metal ion binding protein, putative, expressed|
          Length = 2895

 Score = 29.9 bits (59), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3 / -2

                                      
Query: 135  LDTHALASHVHTCKCNLKWIELGRSL 58
            L   AL  H+H+C C+L +++   SL
Sbjct: 2501 LKQKALVYHLHSCSCHLDYLQRNHSL 2424



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>LOC_Os05g48520:12005.t04286:unspliced-genomic glyoxal oxidase, putative, expressed|
          Length = 2734

 Score = 29.9 bits (59), Expect = 8.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3 / -1

                                               
Query: 96   CMYGRG*QVHEYPGYLFPSCLEMFFFF*TGYLKCF 200
            C  GRG     +P   F S L   F+ * GYLK F
Sbjct: 2500 CQTGRGVMFTLFPLCNFTSLLAQVFYL*NGYLK*F 2396



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>LOC_Os05g48510:12005.t04285:unspliced-genomic phenylalanyl-tRNA synthetase beta chain, putative, expressed|
          Length = 6488

 Score = 29.9 bits (59), Expect = 8.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3 / +3

                                               
Query: 96   CMYGRG*QVHEYPGYLFPSCLEMFFFF*TGYLKCF 200
            C  GRG     +P   F S L   F+ * GYLK F
Sbjct: 6372 CQTGRGVMFTLFPLCNFTSLLAQVFYL*NGYLK*F 6476



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>LOC_Os05g46030:12005.t04091:unspliced-genomic myosin head family protein, expressed|
          Length = 18780

 Score = 29.9 bits (59), Expect = 8.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3 / -2

                              
Query: 141  SSLDTHALASHVHTCKCN 88
            SSL  H+L SH HTC  N
Sbjct: 4370 SSLSVHSLTSHDHTCSKN 4317



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>LOC_Os02g49930:12002.t04577:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass|
          Length = 1157

 Score = 29.9 bits (59), Expect = 8.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1 / -3

                                      
Query: 226 ED*DHLQPRHVNSNPQTFLTCPFSNHM 306
           ED +H  P H+  +  + L CP S+H+
Sbjct: 747 EDHNHRYPSHLMKSRHSLLICPHSSHL 667


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 123,837,111
Number of extensions: 1615547
Number of successful extensions: 5368
Number of sequences better than 10.0: 13
Length of query: 130
Length of database: 55,613,886
Length adjustment: 47
Effective length of query: 83
Effective length of database: 52,968,820
Effective search space: 4396412060
Effective search space used: 4396412060
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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