Clone Information

BLAST Search Result

Clone Name	FLbaf34l05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK241765.1\| Oryza sativa (japonica cultivar-group) cDNA, clo...	200	6e-48
2	gb\|AC132485.2\| Oryza sativa (japonica cultivar-group) chromosome...	194	4e-46
3	gb\|AC130603.2\| Oryza sativa (japonica cultivar-group) chromosome...	194	4e-46
4	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	194	4e-46
5	ref\|NM_001062576.1\| Oryza sativa (japonica cultivar-group) Os05g...	190	6e-45
6	dbj\|AK069076.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	190	6e-45
7	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	188	2e-44
8	dbj\|AP003268.4\| Oryza sativa (japonica cultivar-group) genomic D...	188	2e-44
9	dbj\|AP003249.3\| Oryza sativa (japonica cultivar-group) genomic D...	188	2e-44
10	ref\|NM_001050805.1\| Oryza sativa (japonica cultivar-group) Os01g...	178	2e-41
11	gb\|AY740527.1\| Zea mays expressed protein DH12 mRNA, complete cds	117	7e-23
12	ref\|NM_001050542.1\| Oryza sativa (japonica cultivar-group) Os01g...	44	0.84
13	gb\|CP000158.1\| Hyphomonas neptunium ATCC 15444, complete genome	44	0.84
14	gb\|CP000453.1\| Alkalilimnicola ehrlichei MLHE-1, complete genome	44	0.84
15	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.84
16	emb\|X89384.1\|CLPGIC1AG C.lewisii PgiC1-a gene for cytosolic phos...	44	0.84
17	emb\|X71084.1\|CLPGIC1A C.lewisii PgiC1-a gene for cytosolic phosp...	44	0.84
18	dbj\|AP003023.2\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.84
19	gb\|AC093018.4\| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genom...	44	0.84
20	gb\|AC156448.2\| Volvox carteri clone JGIAOBO-33O24, complete sequ...	44	0.84
21	dbj\|AK100296.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.84
22	ref\|XM_316705.2\| Anopheles gambiae str. PEST ENSANGP00000020897 ...	44	0.84
23	emb\|AL139287.24\| Human DNA sequence from clone RP5-890O3 on chro...	44	0.84
24	gb\|CP000479.1\| Mycobacterium avium 104, complete genome	42	3.3
25	gb\|CP000459.1\| Burkholderia cenocepacia HI2424 chromosome 2, com...	42	3.3
26	gb\|CP000458.1\| Burkholderia cenocepacia HI2424 chromosome 1, com...	42	3.3
27	emb\|CT835135.1\| Oryza sativa (indica cultivar-group) cDNA clone:...	42	3.3
28	ref\|NM_001062380.1\| Oryza sativa (japonica cultivar-group) Os05g...	42	3.3
29	ref\|XM_001142314.1\| PREDICTED: Pan troglodytes retinal outer seg...	42	3.3
30	emb\|CT573213.2\| Frankia alni str. ACN14A chromosome, complete se...	42	3.3
31	gb\|CP000379.1\| Burkholderia cenocepacia AU 1054 chromosome 2, co...	42	3.3
32	gb\|CP000378.1\| Burkholderia cenocepacia AU 1054 chromosome 1, co...	42	3.3
33	gb\|CP000356.1\| Sphingopyxis alaskensis RB2256, complete genome	42	3.3
34	gb\|CP000151.1\| Burkholderia sp. 383 chromosome 1, complete sequence	42	3.3
35	gb\|CP000010.1\| Burkholderia mallei ATCC 23344 chromosome 1, comp...	42	3.3
36	gb\|AE000516.2\| Mycobacterium tuberculosis CDC1551, complete genome	42	3.3
37	gb\|CP000124.1\| Burkholderia pseudomallei 1710b chromosome I, com...	42	3.3
38	gb\|BC008100.1\| Homo sapiens retinal outer segment membrane prote...	42	3.3
39	ref\|NM_000327.2\| Homo sapiens retinal outer segment membrane pro...	42	3.3
40	gb\|AC144737.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	3.3
41	dbj\|AK123339.1\| Homo sapiens cDNA FLJ41345 fis, clone BRAWH2002761	42	3.3
42	gb\|CP000089.1\| Dechloromonas aromatica RCB, complete genome	42	3.3
43	gb\|AC131175.1\| Genomic sequence for Oryza sativa, Nipponbare str...	42	3.3
44	ref\|XM_813063.1\| Trypanosoma cruzi strain CL Brener hypothetical...	42	3.3
45	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	3.3
46	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	42	3.3
47	emb\|BX842572.1\| Mycobacterium tuberculosis H37Rv complete genome...	42	3.3
48	emb\|BX571965.1\| Burkholderia pseudomallei strain K96243, chromos...	42	3.3
49	emb\|BX248334.1\| Mycobacterium bovis subsp. bovis AF2122/97 compl...	42	3.3
50	emb\|AL939118.1\|SCO939118 Streptomyces coelicolor A3(2) complete ...	42	3.3
51	emb\|CR853303.6\| Pig DNA sequence from clone PigE-173F2, complete...	42	3.3
52	gb\|AC023162.41\| Homo sapiens 3 BAC RP11-263I1 (Roswell Park Canc...	42	3.3
53	dbj\|AP005526.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	3.3
54	dbj\|AP005506.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	3.3
55	dbj\|AK111029.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	3.3
56	dbj\|AP001458.6\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	42	3.3
57	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	42	3.3
58	emb\|Y17330.1\|ENI17330 Emericella nidulans suAprgA1 gene	42	3.3
59	gb\|BC036268.1\| Homo sapiens retinal outer segment membrane prote...	42	3.3
60	emb\|AL449213.4\|HS344J2 Homo sapiens chromosome 3 sequence from B...	42	3.3
61	gb\|L07894.1\|HUMROM1A Human rod outer segment membrane protein 1 ...	42	3.3
62	gb\|M96759.1\|HUMROD1X Human rod outer segment membrane protein 1 ...	42	3.3

>dbj|AK241765.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065205E23,
           full insert sequence
          Length = 2205
 Score =  200 bits (101), Expect = 6e-48
 Identities = 236/280 (84%), Gaps = 17/280 (6%)
 Strand = Plus / Plus

                                                                       
Query: 224 cgacaacctctaggacatgttctccggcctccagtacgccctcaaggaggcccgctccac 283
           |||| ||||| |||| ||||||||||| ||||||| ||| | ||||||||||||||||||
Sbjct: 130 cgacgacctccaggagatgttctccgggctccagtccgcgcgcaaggaggcccgctccac 189

                                                                       
Query: 284 cgacgccgtgctcctcgaggcgcagctccactagatgctccgcgagtggcgcgccgagct 343
           ||||||||   | |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 190 cgacgccgccgttctcgaggcgcagctccaccagatgctccgcgagtggcgcgccgagct 249

                                                                       
Query: 344 cagcgt---cccgtcccccgcctcctccctccaggcgcgcggcaggggaacgacaaccgg 400
           ||||||   | | ||||| ||||||||||||||        ||||||||   ||||||||
Sbjct: 250 cagcgtctcctcctccccggcctcctccctcca--------gcagggga---acaaccgg 298

                                                                       
Query: 401 gaccagtcggatccaccgtccaagacaccgcggccgccgcaggtggcggcgacc---gag 457
           || | ||||||||| |||||  |||| | ||||| || |||| |||||||| ||   |||
Sbjct: 299 gagctgtcggatccgccgtcggagacgctgcggctgctgcagctggcggcggccgaggag 358

                                                   
Query: 458 gaggaggacgacgccaccagccagctcgtcgagcagcagc 497
           ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 359 gaggaggacgacgccaccagcaagctcgtcgagcagcagc 398



 Score = 42.1 bits (21), Expect = 3.3
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 530 gcgcagggagaccacgacatgaagccggagccgcacgaggaagcg 574
           |||||||| | ||| ||||||||||||||||| |  |||||||||
Sbjct: 443 gcgcagggcggccaggacatgaagccggagccaccggaggaagcg 487

to top

>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06,
              complete sequence
          Length = 142068

 Score =  194 bits (98), Expect = 4e-46
 Identities = 149/166 (89%)
 Strand = Plus / Plus

                                                                          
Query: 211    ccaagacccgcgtcgacaacctctaggacatgttctccggcctccagtacgccctcaagg 270
              ||||||||||||||||| ||||| |||| ||||||||||||||||||| ||||| |||||
Sbjct: 110138 ccaagacccgcgtcgacgacctccaggagatgttctccggcctccagtccgcccgcaagg 110197

                                                                          
Query: 271    aggcccgctccaccgacgccgtgctcctcgaggcgcagctccactagatgctccgcgagt 330
              ||  ||||||| |||||||||  |||||||||| |||| ||||| | |||||||| ||||
Sbjct: 110198 agagccgctccgccgacgccgccctcctcgaggagcaggtccaccacatgctccgggagt 110257

                                                            
Query: 331    ggcgcgccgagctcagcgtcccgtcccccgcctcctccctccaggc 376
              ||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 110258 ggcgcgccgagctcaacgtcccctcccccgcctcctccctccaggc 110303



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 453    ccgaggaggaggacgacgccaccagccagctcgt 486
              ||||||||||||| |||||||||||| |||||||
Sbjct: 110468 ccgaggaggaggatgacgccaccagcaagctcgt 110501

to top

>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10,
             complete sequence
          Length = 143073

 Score =  194 bits (98), Expect = 4e-46
 Identities = 149/166 (89%)
 Strand = Plus / Plus

                                                                         
Query: 211   ccaagacccgcgtcgacaacctctaggacatgttctccggcctccagtacgccctcaagg 270
             ||||||||||||||||| ||||| |||| ||||||||||||||||||| ||||| |||||
Sbjct: 15895 ccaagacccgcgtcgacgacctccaggagatgttctccggcctccagtccgcccgcaagg 15954

                                                                         
Query: 271   aggcccgctccaccgacgccgtgctcctcgaggcgcagctccactagatgctccgcgagt 330
             ||  ||||||| |||||||||  |||||||||| |||| ||||| | |||||||| ||||
Sbjct: 15955 agagccgctccgccgacgccgccctcctcgaggagcaggtccaccacatgctccgggagt 16014

                                                           
Query: 331   ggcgcgccgagctcagcgtcccgtcccccgcctcctccctccaggc 376
             ||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 16015 ggcgcgccgagctcaacgtcccctcccccgcctcctccctccaggc 16060



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 453   ccgaggaggaggacgacgccaccagccagctcgt 486
             ||||||||||||| |||||||||||| |||||||
Sbjct: 16225 ccgaggaggaggatgacgccaccagcaagctcgt 16258

to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score =  194 bits (98), Expect = 4e-46
 Identities = 149/166 (89%)
 Strand = Plus / Plus

                                                                            
Query: 211      ccaagacccgcgtcgacaacctctaggacatgttctccggcctccagtacgccctcaagg 270
                ||||||||||||||||| ||||| |||| ||||||||||||||||||| ||||| |||||
Sbjct: 25375534 ccaagacccgcgtcgacgacctccaggagatgttctccggcctccagtccgcccgcaagg 25375593

                                                                            
Query: 271      aggcccgctccaccgacgccgtgctcctcgaggcgcagctccactagatgctccgcgagt 330
                ||  ||||||| |||||||||  |||||||||| |||| ||||| | |||||||| ||||
Sbjct: 25375594 agagccgctccgccgacgccgccctcctcgaggagcaggtccaccacatgctccgggagt 25375653

                                                              
Query: 331      ggcgcgccgagctcagcgtcccgtcccccgcctcctccctccaggc 376
                ||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 25375654 ggcgcgccgagctcaacgtcccctcccccgcctcctccctccaggc 25375699



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                  
Query: 453      ccgaggaggaggacgacgccaccagccagctcgt 486
                ||||||||||||| |||||||||||| |||||||
Sbjct: 25375864 ccgaggaggaggatgacgccaccagcaagctcgt 25375897



 Score = 42.1 bits (21), Expect = 3.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 429      cgcggccgccgcaggtggcggcgaccgaggaggagga 465
                ||||||||||||||| ||||||| | | |||||||||
Sbjct: 23366657 cgcggccgccgcaggcggcggcggcggcggaggagga 23366693

to top

>ref|NM_001062576.1| Oryza sativa (japonica cultivar-group) Os05g0515700 (Os05g0515700)
           mRNA, complete cds
          Length = 2397

 Score =  190 bits (96), Expect = 6e-45
 Identities = 147/164 (89%)
 Strand = Plus / Plus

                                                                       
Query: 211 ccaagacccgcgtcgacaacctctaggacatgttctccggcctccagtacgccctcaagg 270
           ||||||||||||||||| ||||| |||| ||||||||||||||||||| ||||| |||||
Sbjct: 208 ccaagacccgcgtcgacgacctccaggagatgttctccggcctccagtccgcccgcaagg 267

                                                                       
Query: 271 aggcccgctccaccgacgccgtgctcctcgaggcgcagctccactagatgctccgcgagt 330
           ||  ||||||| |||||||||  |||||||||| |||| ||||| | |||||||| ||||
Sbjct: 268 agagccgctccgccgacgccgccctcctcgaggagcaggtccaccacatgctccgggagt 327

                                                       
Query: 331 ggcgcgccgagctcagcgtcccgtcccccgcctcctccctccag 374
           ||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 328 ggcgcgccgagctcaacgtcccctcccccgcctcctccctccag 371



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 453 ccgaggaggaggacgacgccaccagccagctcgt 486
           ||||||||||||| |||||||||||| |||||||
Sbjct: 451 ccgaggaggaggatgacgccaccagcaagctcgt 484

to top

>dbj|AK069076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004H20, full
           insert sequence
          Length = 2399

 Score =  190 bits (96), Expect = 6e-45
 Identities = 147/164 (89%)
 Strand = Plus / Plus

                                                                       
Query: 211 ccaagacccgcgtcgacaacctctaggacatgttctccggcctccagtacgccctcaagg 270
           ||||||||||||||||| ||||| |||| ||||||||||||||||||| ||||| |||||
Sbjct: 210 ccaagacccgcgtcgacgacctccaggagatgttctccggcctccagtccgcccgcaagg 269

                                                                       
Query: 271 aggcccgctccaccgacgccgtgctcctcgaggcgcagctccactagatgctccgcgagt 330
           ||  ||||||| |||||||||  |||||||||| |||| ||||| | |||||||| ||||
Sbjct: 270 agagccgctccgccgacgccgccctcctcgaggagcaggtccaccacatgctccgggagt 329

                                                       
Query: 331 ggcgcgccgagctcagcgtcccgtcccccgcctcctccctccag 374
           ||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 330 ggcgcgccgagctcaacgtcccctcccccgcctcctccctccag 373



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 453 ccgaggaggaggacgacgccaccagccagctcgt 486
           ||||||||||||| |||||||||||| |||||||
Sbjct: 453 ccgaggaggaggatgacgccaccagcaagctcgt 486

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score =  188 bits (95), Expect = 2e-44
 Identities = 151/169 (89%), Gaps = 3/169 (1%)
 Strand = Plus / Minus

                                                                            
Query: 211      ccaagacccgcgtcgacaacctctaggacatgttctccggcctccagtacgccctcaagg 270
                ||||||||||||||||| ||||| |||| ||||||||||| ||||||| ||| | |||||
Sbjct: 31590043 ccaagacccgcgtcgacgacctccaggagatgttctccgggctccagtccgcgcgcaagg 31589984

                                                                            
Query: 271      aggcccgctccaccgacgccgtgctcctcgaggcgcagctccactagatgctccgcgagt 330
                |||||||||||||||||||||   | |||||||||||||||||| |||||||||||||||
Sbjct: 31589983 aggcccgctccaccgacgccgccgttctcgaggcgcagctccaccagatgctccgcgagt 31589924

                                                                 
Query: 331      ggcgcgccgagctcagcgt---cccgtcccccgcctcctccctccaggc 376
                |||||||||||||||||||   | | ||||| |||||||||||||||||
Sbjct: 31589923 ggcgcgccgagctcagcgtctcctcctccccggcctcctccctccaggc 31589875



 Score = 91.7 bits (46), Expect = 4e-15
 Identities = 93/108 (86%), Gaps = 3/108 (2%)
 Strand = Plus / Minus

                                                                            
Query: 393      acaaccgggaccagtcggatccaccgtccaagacaccgcggccgccgcaggtggcggcga 452
                |||||||||| | ||||||||| |||||  |||| | ||||| || |||| |||||||| 
Sbjct: 31589771 acaaccgggagctgtcggatccgccgtcggagacgctgcggctgctgcagctggcggcgg 31589712

                                                                
Query: 453      ccgaggaggagga---cgacgccaccagccagctcgtcgagcagcagc 497
                |||||||||||||   ||||||||||||| ||||||||||||||||||
Sbjct: 31589711 ccgaggaggaggaggacgacgccaccagcaagctcgtcgagcagcagc 31589664



 Score = 44.1 bits (22), Expect = 0.84
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 446      gcggcgaccgaggaggaggacg 467
                ||||||||||||||||||||||
Sbjct: 29210457 gcggcgaccgaggaggaggacg 29210478



 Score = 42.1 bits (21), Expect = 3.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 530      gcgcagggagaccacgacatgaagccggagccgcacgaggaagcg 574
                |||||||| | ||| ||||||||||||||||| |  |||||||||
Sbjct: 31589619 gcgcagggcggccaggacatgaagccggagccaccggaggaagcg 31589575

to top

>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0503C12
          Length = 147180

 Score =  188 bits (95), Expect = 2e-44
 Identities = 151/169 (89%), Gaps = 3/169 (1%)
 Strand = Plus / Minus

                                                                        
Query: 211  ccaagacccgcgtcgacaacctctaggacatgttctccggcctccagtacgccctcaagg 270
            ||||||||||||||||| ||||| |||| ||||||||||| ||||||| ||| | |||||
Sbjct: 3775 ccaagacccgcgtcgacgacctccaggagatgttctccgggctccagtccgcgcgcaagg 3716

                                                                        
Query: 271  aggcccgctccaccgacgccgtgctcctcgaggcgcagctccactagatgctccgcgagt 330
            |||||||||||||||||||||   | |||||||||||||||||| |||||||||||||||
Sbjct: 3715 aggcccgctccaccgacgccgccgttctcgaggcgcagctccaccagatgctccgcgagt 3656

                                                             
Query: 331  ggcgcgccgagctcagcgt---cccgtcccccgcctcctccctccaggc 376
            |||||||||||||||||||   | | ||||| |||||||||||||||||
Sbjct: 3655 ggcgcgccgagctcagcgtctcctcctccccggcctcctccctccaggc 3607



 Score = 91.7 bits (46), Expect = 4e-15
 Identities = 93/108 (86%), Gaps = 3/108 (2%)
 Strand = Plus / Minus

                                                                        
Query: 393  acaaccgggaccagtcggatccaccgtccaagacaccgcggccgccgcaggtggcggcga 452
            |||||||||| | ||||||||| |||||  |||| | ||||| || |||| |||||||| 
Sbjct: 3503 acaaccgggagctgtcggatccgccgtcggagacgctgcggctgctgcagctggcggcgg 3444

                                                            
Query: 453  ccgaggaggagga---cgacgccaccagccagctcgtcgagcagcagc 497
            |||||||||||||   ||||||||||||| ||||||||||||||||||
Sbjct: 3443 ccgaggaggaggaggacgacgccaccagcaagctcgtcgagcagcagc 3396



 Score = 42.1 bits (21), Expect = 3.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 530  gcgcagggagaccacgacatgaagccggagccgcacgaggaagcg 574
            |||||||| | ||| ||||||||||||||||| |  |||||||||
Sbjct: 3351 gcgcagggcggccaggacatgaagccggagccaccggaggaagcg 3307

to top

>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0435B05
          Length = 150997

 Score =  188 bits (95), Expect = 2e-44
 Identities = 151/169 (89%), Gaps = 3/169 (1%)
 Strand = Plus / Minus

                                                                          
Query: 211    ccaagacccgcgtcgacaacctctaggacatgttctccggcctccagtacgccctcaagg 270
              ||||||||||||||||| ||||| |||| ||||||||||| ||||||| ||| | |||||
Sbjct: 103066 ccaagacccgcgtcgacgacctccaggagatgttctccgggctccagtccgcgcgcaagg 103007

                                                                          
Query: 271    aggcccgctccaccgacgccgtgctcctcgaggcgcagctccactagatgctccgcgagt 330
              |||||||||||||||||||||   | |||||||||||||||||| |||||||||||||||
Sbjct: 103006 aggcccgctccaccgacgccgccgttctcgaggcgcagctccaccagatgctccgcgagt 102947

                                                               
Query: 331    ggcgcgccgagctcagcgt---cccgtcccccgcctcctccctccaggc 376
              |||||||||||||||||||   | | ||||| |||||||||||||||||
Sbjct: 102946 ggcgcgccgagctcagcgtctcctcctccccggcctcctccctccaggc 102898



 Score = 91.7 bits (46), Expect = 4e-15
 Identities = 93/108 (86%), Gaps = 3/108 (2%)
 Strand = Plus / Minus

                                                                          
Query: 393    acaaccgggaccagtcggatccaccgtccaagacaccgcggccgccgcaggtggcggcga 452
              |||||||||| | ||||||||| |||||  |||| | ||||| || |||| |||||||| 
Sbjct: 102794 acaaccgggagctgtcggatccgccgtcggagacgctgcggctgctgcagctggcggcgg 102735

                                                              
Query: 453    ccgaggaggagga---cgacgccaccagccagctcgtcgagcagcagc 497
              |||||||||||||   ||||||||||||| ||||||||||||||||||
Sbjct: 102734 ccgaggaggaggaggacgacgccaccagcaagctcgtcgagcagcagc 102687



 Score = 42.1 bits (21), Expect = 3.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                           
Query: 530    gcgcagggagaccacgacatgaagccggagccgcacgaggaagcg 574
              |||||||| | ||| ||||||||||||||||| |  |||||||||
Sbjct: 102642 gcgcagggcggccaggacatgaagccggagccaccggaggaagcg 102598

to top

>ref|NM_001050805.1| Oryza sativa (japonica cultivar-group) Os01g0753000 (Os01g0753000)
           mRNA, complete cds
          Length = 1854

 Score =  178 bits (90), Expect = 2e-41
 Identities = 126/138 (91%)
 Strand = Plus / Plus

                                                                       
Query: 211 ccaagacccgcgtcgacaacctctaggacatgttctccggcctccagtacgccctcaagg 270
           ||||||||||||||||| ||||| |||| ||||||||||| ||||||| ||| | |||||
Sbjct: 71  ccaagacccgcgtcgacgacctccaggagatgttctccgggctccagtccgcgcgcaagg 130

                                                                       
Query: 271 aggcccgctccaccgacgccgtgctcctcgaggcgcagctccactagatgctccgcgagt 330
           |||||||||||||||||||||   | |||||||||||||||||| |||||||||||||||
Sbjct: 131 aggcccgctccaccgacgccgccgttctcgaggcgcagctccaccagatgctccgcgagt 190

                             
Query: 331 ggcgcgccgagctcagcg 348
           ||||||||||||||||||
Sbjct: 191 ggcgcgccgagctcagcg 208



 Score = 91.7 bits (46), Expect = 4e-15
 Identities = 93/108 (86%), Gaps = 3/108 (2%)
 Strand = Plus / Plus

                                                                       
Query: 393 acaaccgggaccagtcggatccaccgtccaagacaccgcggccgccgcaggtggcggcga 452
           |||||||||| | ||||||||| |||||  |||| | ||||| || |||| |||||||| 
Sbjct: 212 acaaccgggagctgtcggatccgccgtcggagacgctgcggctgctgcagctggcggcgg 271

                                                           
Query: 453 ccgagg---aggaggacgacgccaccagccagctcgtcgagcagcagc 497
           ||||||   |||||||||||||||||||| ||||||||||||||||||
Sbjct: 272 ccgaggaggaggaggacgacgccaccagcaagctcgtcgagcagcagc 319



 Score = 42.1 bits (21), Expect = 3.3
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 530 gcgcagggagaccacgacatgaagccggagccgcacgaggaagcg 574
           |||||||| | ||| ||||||||||||||||| |  |||||||||
Sbjct: 364 gcgcagggcggccaggacatgaagccggagccaccggaggaagcg 408

to top

>gb|AY740527.1| Zea mays expressed protein DH12 mRNA, complete cds
          Length = 2313

 Score =  117 bits (59), Expect = 7e-23
 Identities = 116/135 (85%)
 Strand = Plus / Plus

                                                                       
Query: 240 atgttctccggcctccagtacgccctcaaggaggcccgctccaccgacgccgtgctcctc 299
           ||||||| ||||||||| | ||| | |||||||  ||||||| |||||||||   |||||
Sbjct: 142 atgttctgcggcctccaatccgctcgcaaggagagccgctccgccgacgccgctgtcctc 201

                                                                       
Query: 300 gaggcgcagctccactagatgctccgcgagtggcgcgccgagctcagcgtcccgtccccc 359
           |||| |||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||| 
Sbjct: 202 gaggagcaggtccaccagatgctccgcgagtggcgtgccgagctcagcgtcccatccccg 261

                          
Query: 360 gcctcctccctccag 374
           || ||||| ||||||
Sbjct: 262 gcttcctctctccag 276

to top

>ref|NM_001050542.1| Oryza sativa (japonica cultivar-group) Os01g0704700 (Os01g0704700)
           mRNA, complete cds
          Length = 2522

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 446 gcggcgaccgaggaggaggacg 467
           ||||||||||||||||||||||
Sbjct: 253 gcggcgaccgaggaggaggacg 274

to top

>gb|CP000158.1| Hyphomonas neptunium ATCC 15444, complete genome
          Length = 3705021

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 518     gcccggaggcacgcgcagggag 539
               ||||||||||||||||||||||
Sbjct: 3014783 gcccggaggcacgcgcagggag 3014804

to top

>gb|CP000453.1| Alkalilimnicola ehrlichei MLHE-1, complete genome
          Length = 3275944

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 327    gagtggcgcgccgagctcagcg 348
              ||||||||||||||||||||||
Sbjct: 984599 gagtggcgcgccgagctcagcg 984578

to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 596      gggcagcagccgccgtcgctgg 617
                ||||||||||||||||||||||
Sbjct: 34334490 gggcagcagccgccgtcgctgg 34334511



 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 431      cggccgccgcaggtggcggcg 451
                |||||||||||||||||||||
Sbjct: 12624136 cggccgccgcaggtggcggcg 12624116

to top

>emb|X89384.1|CLPGIC1AG C.lewisii PgiC1-a gene for cytosolic phosphoglucose isomerase
          Length = 6609

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 666  tagtcttaataatctgttgtta 687
            ||||||||||||||||||||||
Sbjct: 6099 tagtcttaataatctgttgtta 6120

to top

>emb|X71084.1|CLPGIC1A C.lewisii PgiC1-a gene for cytosolic phosphoglucose isomerase
          Length = 5986

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 666  tagtcttaataatctgttgtta 687
            ||||||||||||||||||||||
Sbjct: 5476 tagtcttaataatctgttgtta 5497

to top

>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0684B02
          Length = 132470

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 446   gcggcgaccgaggaggaggacg 467
             ||||||||||||||||||||||
Sbjct: 56244 gcggcgaccgaggaggaggacg 56265

to top

>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete
             sequence
          Length = 143205

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 596   gggcagcagccgccgtcgctgg 617
             ||||||||||||||||||||||
Sbjct: 90980 gggcagcagccgccgtcgctgg 90959

to top

>gb|AC156448.2| Volvox carteri clone JGIAOBO-33O24, complete sequence
          Length = 38975

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 430   gcggccgccgcaggtggcggcg 451
             ||||||||||||||||||||||
Sbjct: 35254 gcggccgccgcaggtggcggcg 35275

to top

>dbj|AK100296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077A12, full
           insert sequence
          Length = 2523

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 446 gcggcgaccgaggaggaggacg 467
           ||||||||||||||||||||||
Sbjct: 254 gcggcgaccgaggaggaggacg 275

to top

>ref|XM_316705.2| Anopheles gambiae str. PEST ENSANGP00000020897 (ENSANGG00000018408),
            partial mRNA
          Length = 5874

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 479  cagctcgtcgagcagcagcgccggcc 504
            |||||||||||||||||||| |||||
Sbjct: 2721 cagctcgtcgagcagcagcggcggcc 2746

to top

>emb|AL139287.24| Human DNA sequence from clone RP5-890O3 on chromosome 1 Contains the
             AKIP gene for aurora-A kinase interacting protein, a novel
             gene (FLJ90811) a NADH dehydrogenase (ubiquinone) 1 beta
             subcomplex 4 15kDa (NDUFB4) pseudogene, a novel gene
             (MGC3047), the DVL1 gene for dishevelled dsh homolog 1
             (Drosophila), the TAS1R3 gene for taste receptor type 1
             member 3, a novel gene (MGC10334), a novel gene
             (FLJ20542), a novel gene and five CpG islands, complete
             sequence
          Length = 84445

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 133   cacccccactccctccctgggc 154
             ||||||||||||||||||||||
Sbjct: 59767 cacccccactccctccctgggc 59788

to top

>gb|CP000479.1| Mycobacterium avium 104, complete genome
          Length = 5475491

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 478     ccagctcgtcgagcagcagcg 498
               |||||||||||||||||||||
Sbjct: 5350166 ccagctcgtcgagcagcagcg 5350186

to top

>gb|CP000459.1| Burkholderia cenocepacia HI2424 chromosome 2, complete genome
          Length = 2998664

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 479     cagctcgtcgagcagcagcgc 499
               |||||||||||||||||||||
Sbjct: 2720018 cagctcgtcgagcagcagcgc 2720038

to top

>gb|CP000458.1| Burkholderia cenocepacia HI2424 chromosome 1, complete genome
          Length = 3483902

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 481     gctcgtcgagcagcagcgccg 501
               |||||||||||||||||||||
Sbjct: 2839703 gctcgtcgagcagcagcgccg 2839723

to top

>emb|CT835135.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA012M17, full
           insert sequence
          Length = 799

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 431 cggccgccgcaggtggcggcg 451
           |||||||||||||||||||||
Sbjct: 129 cggccgccgcaggtggcggcg 109

to top

>ref|NM_001062380.1| Oryza sativa (japonica cultivar-group) Os05g0478000 (Os05g0478000)
           mRNA, complete cds
          Length = 888

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 429 cgcggccgccgcaggtggcggcgaccgaggaggagga 465
           ||||||||||||||| ||||||| | | |||||||||
Sbjct: 272 cgcggccgccgcaggcggcggcggcggcggaggagga 308

to top

>ref|XM_001142314.1| PREDICTED: Pan troglodytes retinal outer segment membrane protein 1
           (ROM1), mRNA
          Length = 1056

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 458 gaggaggacgacgccaccagccagc 482
           |||||||| ||||||||||||||||
Sbjct: 111 gaggaggatgacgccaccagccagc 87

to top

>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence
          Length = 7497934

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 481     gctcgtcgagcagcagcgccg 501
               |||||||||||||||||||||
Sbjct: 7435891 gctcgtcgagcagcagcgccg 7435871

to top

>gb|CP000379.1| Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence
          Length = 2788459

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 479     cagctcgtcgagcagcagcgc 499
               |||||||||||||||||||||
Sbjct: 2546970 cagctcgtcgagcagcagcgc 2546950

to top

>gb|CP000378.1| Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence
          Length = 3294563

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 481     gctcgtcgagcagcagcgccg 501
               |||||||||||||||||||||
Sbjct: 2155358 gctcgtcgagcagcagcgccg 2155378

to top

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 477     gccagctcgtcgagcagcagcgccggccg 505
               |||| |||||||||||||||| |||||||
Sbjct: 1797490 gccacctcgtcgagcagcagcaccggccg 1797518

to top

>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 481     gctcgtcgagcagcagcgccg 501
               |||||||||||||||||||||
Sbjct: 3016517 gctcgtcgagcagcagcgccg 3016537

to top

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 481    gctcgtcgagcagcagcgccg 501
              |||||||||||||||||||||
Sbjct: 386734 gctcgtcgagcagcagcgccg 386714

to top

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 478    ccagctcgtcgagcagcagcg 498
              |||||||||||||||||||||
Sbjct: 134191 ccagctcgtcgagcagcagcg 134171

to top

>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 481     gctcgtcgagcagcagcgccg 501
               |||||||||||||||||||||
Sbjct: 1117429 gctcgtcgagcagcagcgccg 1117409

to top

>gb|BC008100.1| Homo sapiens retinal outer segment membrane protein 1, mRNA (cDNA
           clone MGC:17106 IMAGE:4177529), complete cds
          Length = 1477

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 458 gaggaggacgacgccaccagccagc 482
           |||||||| ||||||||||||||||
Sbjct: 242 gaggaggatgacgccaccagccagc 218

to top

>ref|NM_000327.2| Homo sapiens retinal outer segment membrane protein 1 (ROM1), mRNA
          Length = 1477

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 458 gaggaggacgacgccaccagccagc 482
           |||||||| ||||||||||||||||
Sbjct: 242 gaggaggatgacgccaccagccagc 218

to top

>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0018K15, complete sequence
          Length = 168519

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 429   cgcggccgccgcaggtggcggcgaccgaggaggagga 465
             ||||||||||||||| ||||||| | | |||||||||
Sbjct: 52193 cgcggccgccgcaggcggcggcggcggcggaggagga 52229

to top

>dbj|AK123339.1| Homo sapiens cDNA FLJ41345 fis, clone BRAWH2002761
          Length = 2296

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 127 atccctcacccccactccctc 147
           |||||||||||||||||||||
Sbjct: 975 atccctcacccccactccctc 995

to top

>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 481    gctcgtcgagcagcagcgccg 501
              |||||||||||||||||||||
Sbjct: 113687 gctcgtcgagcagcagcgccg 113707

to top

>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0030D15, from chromosome 3, complete sequence
          Length = 151972

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 431   cggccgccgcaggtggcggcg 451
             |||||||||||||||||||||
Sbjct: 49616 cggccgccgcaggtggcggcg 49636

to top

>ref|XM_813063.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053508501.310) partial mRNA
          Length = 3891

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 354  tcccccgcctcctccctccag 374
            |||||||||||||||||||||
Sbjct: 2933 tcccccgcctcctccctccag 2913

to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 445     ggcggcgaccgaggaggagga 465
               |||||||||||||||||||||
Sbjct: 2493666 ggcggcgaccgaggaggagga 2493686

to top

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 485     gtcgagcagcagcgccggccg 505
               |||||||||||||||||||||
Sbjct: 1376480 gtcgagcagcagcgccggccg 1376500

to top

>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13
          Length = 341957

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 478    ccagctcgtcgagcagcagcg 498
              |||||||||||||||||||||
Sbjct: 134199 ccagctcgtcgagcagcagcg 134179

to top

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 481    gctcgtcgagcagcagcgccg 501
              |||||||||||||||||||||
Sbjct: 998388 gctcgtcgagcagcagcgccg 998368

to top

>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14
          Length = 343050

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 478    ccagctcgtcgagcagcagcg 498
              |||||||||||||||||||||
Sbjct: 134237 ccagctcgtcgagcagcagcg 134217

to top

>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29
          Length = 303550

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 481    gctcgtcgagcagcagcgccggccg 505
              ||||||||||||||||| |||||||
Sbjct: 118076 gctcgtcgagcagcagcaccggccg 118052

to top

>emb|CR853303.6| Pig DNA sequence from clone PigE-173F2, complete sequence
          Length = 151259

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 125   gcatccctcacccccactccc 145
             |||||||||||||||||||||
Sbjct: 47708 gcatccctcacccccactccc 47728

to top

>gb|AC023162.41| Homo sapiens 3 BAC RP11-263I1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 95579

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 127   atccctcacccccactccctc 147
             |||||||||||||||||||||
Sbjct: 51594 atccctcacccccactccctc 51574

to top

>dbj|AP005526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0571B09
          Length = 147382

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 445  ggcggcgaccgaggaggagga 465
            |||||||||||||||||||||
Sbjct: 8023 ggcggcgaccgaggaggagga 8043

to top

>dbj|AP005506.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0665F09
          Length = 147102

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 445   ggcggcgaccgaggaggagga 465
             |||||||||||||||||||||
Sbjct: 55295 ggcggcgaccgaggaggagga 55315

to top

>dbj|AK111029.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-H07, full
           insert sequence
          Length = 888

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 429 cgcggccgccgcaggtggcggcgaccgaggaggagga 465
           ||||||||||||||| ||||||| | | |||||||||
Sbjct: 272 cgcggccgccgcaggcggcggcggcggcggaggagga 308

to top

>dbj|AP001458.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-831H9, complete
             sequence
          Length = 177433

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 458   gaggaggacgacgccaccagccagc 482
             |||||||| ||||||||||||||||
Sbjct: 20659 gaggaggatgacgccaccagccagc 20635

to top

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 478     ccagctcgtcgagcagcagcg 498
               |||||||||||||||||||||
Sbjct: 3913942 ccagctcgtcgagcagcagcg 3913922

to top

>emb|Y17330.1|ENI17330 Emericella nidulans suAprgA1 gene
          Length = 2762

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 537  gagaccacgacatgaagccgg 557
            |||||||||||||||||||||
Sbjct: 1017 gagaccacgacatgaagccgg 997

to top

>gb|BC036268.1| Homo sapiens retinal outer segment membrane protein 1, mRNA (cDNA
           clone IMAGE:4179213)
          Length = 1437

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 458 gaggaggacgacgccaccagccagc 482
           |||||||| ||||||||||||||||
Sbjct: 242 gaggaggatgacgccaccagccagc 218

to top

>emb|AL449213.4|HS344J2 Homo sapiens chromosome 3 sequence from BAC 344J2 map 3q21 region
             D3S3607-D3S1587, complete sequence
          Length = 98356

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 127   atccctcacccccactccctc 147
             |||||||||||||||||||||
Sbjct: 53254 atccctcacccccactccctc 53274

to top

>gb|L07894.1|HUMROM1A Human rod outer segment membrane protein 1 (ROM1) mRNA, complete
           cds
          Length = 1336

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 458 gaggaggacgacgccaccagccagc 482
           |||||||| ||||||||||||||||
Sbjct: 116 gaggaggatgacgccaccagccagc 92

to top

>gb|M96759.1|HUMROD1X Human rod outer segment membrane protein 1 (ROM1) gene exons 1-3,
           complete cds
          Length = 2841

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 458 gaggaggacgacgccaccagccagc 482
           |||||||| ||||||||||||||||
Sbjct: 762 gaggaggatgacgccaccagccagc 738


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 117,307,993
Number of extensions: 7192765
Number of successful extensions: 142886
Number of sequences better than 10.0: 62
Number of HSP's gapped: 142877
Number of HSP's successfully gapped: 80
Length of query: 883
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 861
Effective length of database: 18,508,616,841
Effective search space: 15935919100101
Effective search space used: 15935919100101
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result