ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf31j21 |
|---|---|
| Clone Library Name | barley_pub |
>Q76C99:RF1_ORYSA Rf1 protein, mitochondrial precursor - Oryza sativa (Rice)| Length = 791 Score = 39.7 bits (91), Expect = 0.035 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 3/143 (2%) Frame = +1 Query: 466 YGALDSFVAWELEFPLIAVKKALKTLEDEKEWKRIIQVI-KWMFNKGQGKTMGSYQTLLN 642 + AL + + IA LK L +K + ++ + M G + SY LL Sbjct: 107 FAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLK 166 Query: 643 ALIEDGRVEEAEELFQKIFSRYMEGLPR--IFFMKMISLYYRLGSYEKMFEVFADMEELG 816 L ++ R +EA EL + G P + + +I+ +++ G +K + + +M + G Sbjct: 167 GLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRG 226 Query: 817 VRPDTSIVRMLGDVFMKLEMLDK 885 + PD + K + +DK Sbjct: 227 ILPDVVTYNSIIAALCKAQAMDK 249 Score = 36.6 bits (83), Expect = 0.30 Identities = 23/109 (21%), Positives = 58/109 (53%) Frame = +1 Query: 556 EWKRIIQVIKWMFNKGQGKTMGSYQTLLNALIEDGRVEEAEELFQKIFSRYMEGLPRIFF 735 +W+R ++I M ++G + +++++ ++GRV E+E+LF+ + R I + Sbjct: 456 KWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFE-LMVRIGVKPNVITY 514 Query: 736 MKMISLYYRLGSYEKMFEVFADMEELGVRPDTSIVRMLGDVFMKLEMLD 882 +I+ Y G ++ ++ + M +G++P+T L + + K+ ++ Sbjct: 515 NTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRME 563 Score = 34.7 bits (78), Expect = 1.1 Identities = 23/98 (23%), Positives = 49/98 (50%) Frame = +1 Query: 535 KTLEDEKEWKRIIQVIKWMFNKGQGKTMGSYQTLLNALIEDGRVEEAEELFQKIFSRYME 714 + +E EK ++ ++++ G + +Y TL+N G+++EA +L + S ++ Sbjct: 491 RVIESEKLFELMVRI-------GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLK 543 Query: 715 GLPRIFFMKMISLYYRLGSYEKMFEVFADMEELGVRPD 828 + + +I+ Y ++ E +F +ME GV PD Sbjct: 544 P-NTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPD 580 Score = 31.6 bits (70), Expect = 9.5 Identities = 24/91 (26%), Positives = 44/91 (48%) Frame = +1 Query: 625 YQTLLNALIEDGRVEEAEELFQKIFSRYMEGLPRIFFMKMISLYYRLGSYEKMFEVFADM 804 Y +L++ L + E AEEL ++ R + L IFF +I + + G + ++F M Sbjct: 444 YNSLIHGLCTCNKWERAEELILEMLDRGI-CLNTIFFNSIIDSHCKEGRVIESEKLFELM 502 Query: 805 EELGVRPDTSIVRMLGDVFMKLEMLDKYEKL 897 +GV+P+ L + + +D+ KL Sbjct: 503 VRIGVKPNVITYNTLINGYCLAGKMDEAMKL 533
>P0C043:Y4791_ARATH Putative PPR-repeat protein At4g17915 - Arabidopsis thaliana| (Mouse-ear cress) Length = 463 Score = 35.8 bits (81), Expect = 0.50 Identities = 26/108 (24%), Positives = 48/108 (44%) Frame = +1 Query: 562 KRIIQVIKWMFNKGQGKTMGSYQTLLNALIEDGRVEEAEELFQKIFSRYMEGLPRIFFMK 741 K + ++ + KG+ + SY TLLN +DG ++ ++L +I R M+ Sbjct: 275 KEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKA-DEYTHTI 333 Query: 742 MISLYYRLGSYEKMFEVFADMEELGVRPDTSIVRMLGDVFMKLEMLDK 885 +++ R G + E F M E+G+ + L D K +D+ Sbjct: 334 IVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDR 381
>P46822:KLC_CAEEL Kinesin light chain - Caenorhabditis elegans| Length = 540 Score = 35.8 bits (81), Expect = 0.50 Identities = 23/88 (26%), Positives = 44/88 (50%) Frame = +1 Query: 451 VKEEVYGALDSFVAWELEFPLIAVKKALKTLEDEKEWKRIIQVIKWMFNKGQGKTMGSYQ 630 ++E+V G VA +L + + K E EK +KR +++ + + Sbjct: 319 IREKVLGDDHPDVAKQLNNLALLCQNQGKYEEVEKYYKRALEIYESKLGPDDPNVAKTKN 378 Query: 631 TLLNALIEDGRVEEAEELFQKIFSRYME 714 L +A ++ G+ +EAEEL+++I +R E Sbjct: 379 NLSSAYLKQGKYKEAEELYKQILTRAHE 406
>Q73HW7:SYI_WOLPM Isoleucyl-tRNA synthetase - Wolbachia pipientis wMel| Length = 1111 Score = 33.9 bits (76), Expect = 1.9 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 4/119 (3%) Frame = +1 Query: 364 FPRVWKADKRIGTVSKSQKLVKCIKDLSNVKE-EVYGALDSFVAWELE--FPLIAVKKAL 534 FP + AD I + S + + IKD NVK E+ L+ + EL+ FPL+ Sbjct: 900 FPVIQVADTGIQCAADSNEYQEMIKDEVNVKSLELVNRLEGIASLELKLNFPLLG----- 954 Query: 535 KTLEDEKEWKRIIQVIKWMFNKGQGKTMGSYQTLLNALIEDGRVEEAE-ELFQKIFSRY 708 K + D + K+++Q +K +G+ K + + Q L E+ +E+ E EL K S Y Sbjct: 955 KRIPD--KIKKLVQYVK----EGKWKQVENEQIFLGDESENYIIEKGEYELLLKANSEY 1007
>Q921X6:RPC6_MOUSE DNA-directed RNA polymerase III subunit RPC6 - Mus musculus (Mouse)| Length = 316 Score = 33.9 bits (76), Expect = 1.9 Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 32/119 (26%) Frame = +1 Query: 409 KSQKLVKCIKDLSNVKEEVY-------------GALDSFVAWELEFPLIAVKKALKTLED 549 +S+KL+K +K ++ K++VY GA S +E EF + ++ K L+ Sbjct: 131 ESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQS 190 Query: 550 EKEWKR------IIQ----------VIKWMFNKGQGK---TMGSYQTLLNALIEDGRVE 669 + E R +IQ V K++ G K +M +T+LN LI DG+VE Sbjct: 191 KAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVE 249
>O25916:DNAB_HELPY Replicative DNA helicase - Helicobacter pylori (Campylobacter| pylori) Length = 488 Score = 33.9 bits (76), Expect = 1.9 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 12/82 (14%) Frame = +1 Query: 487 VAWELEFPLIAVKKALKTLEDEKEWKRIIQVIK------------WMFNKGQGKTMGSYQ 630 +A ELE P+IA+ + ++LE+ + + I+ IK +G M + Sbjct: 341 LARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFLYRGYIYQMRAED 400 Query: 631 TLLNALIEDGRVEEAEELFQKI 696 ++ L ++G++EEA+EL+ K+ Sbjct: 401 NKIDKLKKEGKIEEAQELYLKV 422
>Q2T9S3:RPC6_BOVIN DNA-directed RNA polymerase III subunit RPC6 - Bos taurus (Bovine)| Length = 316 Score = 33.5 bits (75), Expect = 2.5 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 32/119 (26%) Frame = +1 Query: 409 KSQKLVKCIKDLSNVKEEVY-------------GALDSFVAWELEFPLIAVKKALKTLED 549 +S+KL+K +K ++ K++VY GA S +E EF + ++ K L++ Sbjct: 131 ESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQN 190 Query: 550 EKEWKR------IIQ----------VIKWMFNKGQGK---TMGSYQTLLNALIEDGRVE 669 + E R +IQ V K++ G K +M +T+LN LI DG+VE Sbjct: 191 KAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVE 249
>Q9H1D9:RPC6_HUMAN DNA-directed RNA polymerase III subunit RPC6 - Homo sapiens (Human)| Length = 316 Score = 33.1 bits (74), Expect = 3.3 Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 32/119 (26%) Frame = +1 Query: 409 KSQKLVKCIKDLSNVKEEVY-------------GALDSFVAWELEFPLIAVKKALKTLED 549 +S+KL+K +K ++ K++VY GA S +E EF + ++ K L+ Sbjct: 131 ESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQS 190 Query: 550 EKEWKR------IIQ----------VIKWMFNKGQGK---TMGSYQTLLNALIEDGRVE 669 + E R +IQ V K++ G K +M +T+LN LI DG+VE Sbjct: 191 KAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVE 249
>P61760:SYL_NANEQ Leucyl-tRNA synthetase - Nanoarchaeum equitans| Length = 977 Score = 32.7 bits (73), Expect = 4.3 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 9/156 (5%) Frame = +1 Query: 457 EEVYGALDSFVAWELEFPLIAVKKALKTLEDEKEWKRIIQVIKWMFNKGQ-GKTMGSYQT 633 E V+G ++ +V E E+ L VKK E +K+ ++ + N+ + K + Y Sbjct: 196 ETVFGVVNIWVNPETEYVLAKVKKVFYVYELYSLYKKFGRLPLNIENRDKLEKLIQDYNN 255 Query: 634 LLNAL--IEDG--RVEEAEELFQKIFSRYMEGLPRIFFMKMISLYYRLGSYEKMFEVF-- 795 LL+ L E G + AEE+ K +++ L F + + E ++E + Sbjct: 256 LLDRLKQYEKGIDLIAHAEEIAYKPKEEFVKELKE--FAEKEGIKIEEKDIELLYEYYNT 313 Query: 796 --ADMEELGVRPDTSIVRMLGDVFMKLEMLDKYEKL 897 EE + P+T ++ L + ++E++ K +KL Sbjct: 314 KVETQEEKWILPNTIVIEELKNQDFEIEIIGKIDKL 349
>Q9ZJM5:DNAB_HELPJ Replicative DNA helicase - Helicobacter pylori J99 (Campylobacter| pylori J99) Length = 486 Score = 32.7 bits (73), Expect = 4.3 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 12/82 (14%) Frame = +1 Query: 487 VAWELEFPLIAVKKALKTLEDEKEWKRIIQVIK------------WMFNKGQGKTMGSYQ 630 +A ELE P+IA+ + ++LE+ + + I+ IK +G M + Sbjct: 341 LARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFLYRGYIYQMRAED 400 Query: 631 TLLNALIEDGRVEEAEELFQKI 696 ++ L ++G+VEEA+EL K+ Sbjct: 401 NKIDKLKKEGKVEEAQELHLKV 422
>Q8ZVK6:AGOG_PYRAE N-glycosylase/DNA lyase - Pyrobaculum aerophilum| Length = 256 Score = 32.7 bits (73), Expect = 4.3 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Frame = +1 Query: 514 IAVKKALKTLEDEKEWKRIIQVIKWMFNKGQGKTMGSYQTLLNALIE---DGRVEEAEEL 684 + +++ LK + +++ + V+K G+T+GS +LNALI G+ EE E Sbjct: 17 LGIEEVLKLERRDPQYRAVCNVVK-----RHGETVGSRLAMLNALISYRLTGKGEEHWEY 71 Query: 685 FQKIFSR 705 F K FS+ Sbjct: 72 FGKYFSQ 78
>O70537:CP3AV_MESAU Cytochrome P450 3A31 - Mesocricetus auratus (Golden hamster)| Length = 501 Score = 32.3 bits (72), Expect = 5.6 Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 16/145 (11%) Frame = +1 Query: 232 DHSTMLSLRCWAPTFGLSVDRAVVLRSRKFNSLVVCGARGPRPR---------FPRVWKA 384 D +++LSL W +S+ L + K++ G GP+P + +W Sbjct: 2 DLTSVLSLETWV-LLAISLVLLYRLGTHKYDIFKKQGIPGPKPLPFLGNVLNYYKGIWTF 60 Query: 385 D----KRIGTV---SKSQKLVKCIKDLSNVKEEVYGALDSFVAWELEFPLIAVKKALKTL 543 D K+ G + + Q+ + + D +K + S +F + + ++ Sbjct: 61 DIECHKKYGKIWGLFEGQRPLFTVTDTEMIKNVLVKECYSIFTNRRDFGPVGIMSKAVSI 120 Query: 544 EDEKEWKRIIQVIKWMFNKGQGKTM 618 ++EWKRI ++ F G+ K M Sbjct: 121 SKDEEWKRIRALLSPTFTSGKLKEM 145
>O67010:TRM1_AQUAE Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase -| Aquifex aeolicus Length = 392 Score = 31.6 bits (70), Expect = 9.5 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 14/99 (14%) Frame = +1 Query: 373 VWKADKRIGTVSKSQKLVKC-----IKDLSNVKEE---------VYGALDSFVAWELEFP 510 V K DK I Q C + DL KE+ + G L W+ EF Sbjct: 231 VEKVDKLIEQFGYIQYCFNCMNREVVTDLYKFKEKCPHCGSKFHIGGPLWIGKLWDEEFT 290 Query: 511 LIAVKKALKTLEDEKEWKRIIQVIKWMFNKGQGKTMGSY 627 ++A K E EKE KRI+++IK + Q +T+G Y Sbjct: 291 NFLYEEAQKREEIEKETKRILKLIK---EESQLQTVGFY 326
>Q8C2E4:PTCD1_MOUSE Pentatricopeptide repeat protein 1 - Mus musculus (Mouse)| Length = 695 Score = 31.6 bits (70), Expect = 9.5 Identities = 34/175 (19%), Positives = 71/175 (40%), Gaps = 1/175 (0%) Frame = +1 Query: 337 CGARGPRPRFPRVWKADKRIGTVSKSQKLVKCIKDLSNVKEEVYGALDSFVAWELEFPLI 516 CG+ P P K + ++ + + +EE +G+L + F Sbjct: 47 CGSSSPLPLGSG---NQKEMSSLCSDSSKLSTVAPQEEAEEESFGSLSGKFSSRRIFHKS 103 Query: 517 AVKKALKTLEDEKEWKRIIQVIKWMFNKGQGKTMGSYQTLLNALIEDGRVEEAEELFQKI 696 + L+++ + ++ W +G+ T Y LI++G++ EA +LF++ Sbjct: 104 TAQLYNLQLKEQGGEEEELEPRPW---RGRRNTQYWYFFQCKRLIKEGKLAEALDLFERQ 160 Query: 697 FSRYMEGLP-RIFFMKMISLYYRLGSYEKMFEVFADMEELGVRPDTSIVRMLGDV 858 + P + +I R+G +K F +F DM++ + P + L +V Sbjct: 161 MLKEERLQPLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNV 215
>P42850:PPSA_PYRFU Probable phosphoenolpyruvate synthase - Pyrococcus furiosus| Length = 817 Score = 31.6 bits (70), Expect = 9.5 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +1 Query: 511 LIAVKKALKTLEDEKEWKRIIQVIKWMFNKGQGKTMGSYQTLLNALIEDGRVEEAEEL 684 +I V K + +ED W Q I+W ++K GK + L E+ EEAEE+ Sbjct: 320 IIEVAKMGQKIEDHYGWP---QDIEWAYDKDDGKLYIVQSRPITTLKEEATAEEAEEV 374
>P97839:DLGP4_RAT Disks large-associated protein 4 - Rattus norvegicus (Rat)| Length = 992 Score = 31.6 bits (70), Expect = 9.5 Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 6/93 (6%) Frame = -1 Query: 462 LLLYIRQILNTFDELLRLGDGSDSLVGLPHARKPRPRTPGPA------NH*GVELSRAQD 301 L L I I FDEL L S LV P RK + P P + V +A D Sbjct: 888 LQLSIEDISMKFDELYHLKANSWQLVETPEKRKEEKKPPPPVPKKPAKSKAAVSRDKASD 947 Query: 300 DGSVDR*TECGRPTPQGKHGAVISKTGAPEIAD 202 G R E + K A + + A E AD Sbjct: 948 AGDKQR-QEARKRLLAAKRAASVRQNSATESAD 979
>P51538:CP3A9_RAT Cytochrome P450 3A9 - Rattus norvegicus (Rat)| Length = 503 Score = 31.6 bits (70), Expect = 9.5 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Frame = +1 Query: 508 PLIAVKKALKTLEDEKEWKRIIQVIKWMFNKGQGKTM----GSYQTLLNALIEDGRVEEA 675 P+ +KKA+ EDE EWKRI ++ F G+ K M Y +L + G E Sbjct: 110 PVGILKKAISISEDE-EWKRIRALLSPTFTSGKLKEMFPIINQYTDMLVRNMRQGSEEGK 168 Query: 676 EELFQKIFSRY 708 + IF Y Sbjct: 169 PTSMKDIFGAY 179
>P57208:6PGD_BUCAI 6-phosphogluconate dehydrogenase, decarboxylating - Buchnera| aphidicola subsp. Acyrthosiphon pisum (Acyrthosiphon pisum symbiotic bacterium) Length = 468 Score = 31.6 bits (70), Expect = 9.5 Identities = 28/108 (25%), Positives = 49/108 (45%) Frame = +1 Query: 403 VSKSQKLVKCIKDLSNVKEEVYGALDSFVAWELEFPLIAVKKALKTLEDEKEWKRIIQVI 582 +S+S L+K + ++SN EE+ + EL LI + K + +DEK I +++ Sbjct: 196 ISESYFLLKYLLNMSN--EELSSTFSKWNKGELNSYLIEITKNIFIEKDEKGKYLIDRIL 253 Query: 583 KWMFNKGQGKTMGSYQTLLNALIEDGRVEEAEELFQKIFSRYMEGLPR 726 +KG GK + L E + + +F+RY+ L R Sbjct: 254 DVAEDKGTGKWISKSALDLR--------EPLSLITESVFARYLSSLKR 293 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 268,377,481 Number of extensions: 6027539 Number of successful extensions: 15922 Number of sequences better than 10.0: 18 Number of HSP's gapped: 15906 Number of HSP's successfully gapped: 21 Length of query: 518 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 400 Effective length of database: 68,319,629 Effective search space: 27327851600 Effective search space used: 27327851600 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
