ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf26a11 |
|---|---|
| Clone Library Name | barley_pub |
>Q9SXQ6:FEN1A_ORYSJ Flap endonuclease 1a - Oryza sativa subsp. japonica (Rice)| Length = 380 Score = 653 bits (1684), Expect = 0.0 Identities = 321/361 (88%), Positives = 346/361 (95%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MG+KGLTKLLADNAPK+M+EQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAG+ Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGD 457 VTSHLQGMF+RTIRLLEAGIKPVYVFDGKPP++KK EL KR++KR +AT+ELT+AVE GD Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGD 120 Query: 458 TDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASED 637 DAIEKFSKRTVKVTKQHN++CKRLLRLMGVPVVEAPCEAE++CAALC +D VYAVASED Sbjct: 121 KDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASED 180 Query: 638 MDSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIK 817 MDSLTFGAPRF+RHLMDPSS+KIPVMEFEVAK+LEELE TMDQFIDLCIL GCDYCDSIK Sbjct: 181 MDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIK 240 Query: 818 GIGGLTALKLIRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWTA 997 GIGG TALKLIRQHGSIE ILENINKD+YQIPEDWPYQEARR+FKEP+VTLDIPELKW A Sbjct: 241 GIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDIPELKWNA 300 Query: 998 PDEEGLVNFLVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFFKPTVSTSVPLKRKETS 1177 PDEEGLV FLVKENGF+QDRVTKAIEKIK AKNKSSQGRLESFFKP VSTSVPLKRK+TS Sbjct: 301 PDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTSVPLKRKDTS 360 Query: 1178 E 1180 E Sbjct: 361 E 361
>Q75LI2:FEN1B_ORYSJ Flap endonuclease 1b - Oryza sativa subsp. japonica (Rice)| Length = 412 Score = 483 bits (1244), Expect = e-136 Identities = 230/339 (67%), Positives = 284/339 (83%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MG+KGLTKLLA++AP + ++ E Y GR +A+D S+SIYQFLIVVGR G E LTNEAG+ Sbjct: 1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGE 60 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGD 457 VTSHLQGM +RT+R+LEAGIKPV+VFDG+PP+MKK EL KR KR+ ++E+L +A+E GD Sbjct: 61 VTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVGD 120 Query: 458 TDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASED 637 D IEKFSKRTVKVTK+HN+DCKRLL LMGVPVV+AP EAE+QCAALC++ KV+A+ASED Sbjct: 121 EDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHKVFAIASED 180 Query: 638 MDSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIK 817 MDSLTFGA RF+RHL D S ++ PV EFEV+K+LEEL TMDQFIDLCIL GCDYC++I+ Sbjct: 181 MDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSGCDYCENIR 240 Query: 818 GIGGLTALKLIRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWTA 997 GIGG ALKLIRQHG IE +++N+++ +Y +PEDWPYQE R +FKEP+V DIP+ WT Sbjct: 241 GIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQEVRALFKEPNVCTDIPDFLWTP 300 Query: 998 PDEEGLVNFLVKENGFSQDRVTKAIEKIKSAKNKSSQGR 1114 PDEEGL+NFL EN FS DRV K++EKIK+A +K S GR Sbjct: 301 PDEEGLINFLAAENNFSPDRVVKSVEKIKAANDKFSLGR 339
>P70054:FEN1B_XENLA Flap endonuclease 1-B - Xenopus laevis (African clawed frog)| Length = 382 Score = 407 bits (1045), Expect = e-113 Identities = 204/359 (56%), Positives = 264/359 (73%), Gaps = 1/359 (0%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MG+ GL KL+AD AP +++E +SYFGR++AVDASM IYQFLI V + G L NE G+ Sbjct: 1 MGIHGLAKLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDG-NMLQNEEGE 59 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGD 457 TSHL GMF RTIR+LE GIKPVYVFDGKPP+MK EL KR +R EA + L A EAG+ Sbjct: 60 TTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGE 119 Query: 458 TDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASED 637 + IEKF+KR VKVTKQHN++CK+LL LMG+P V+APCEAE+ CAAL K+ KVYA A+ED Sbjct: 120 VENIEKFNKRLVKVTKQHNEECKKLLSLMGIPYVDAPCEAEATCAALVKAGKVYAAATED 179 Query: 638 MDSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIK 817 MD+LTFG P +RHL ++K+P+ EF + ++ +++ +QF+DLCIL G DYC++I+ Sbjct: 180 MDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVFQDIGINHEQFVDLCILLGSDYCETIR 239 Query: 818 GIGGLTALKLIRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSV-TLDIPELKWT 994 GIG A+ LIRQH +IE I++NI+ KY IPE+W ++EAR++F EP V DI ELKWT Sbjct: 240 GIGPKRAIDLIRQHKTIEEIIDNIDLKKYPIPENWLHKEARQLFLEPEVIDADITELKWT 299 Query: 995 APDEEGLVNFLVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFFKPTVSTSVPLKRKE 1171 PDEEGLV F+ E FS+DR+ +K+ + S+QGRL+ FFK T S S KRKE Sbjct: 300 EPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKVTGSIS-STKRKE 357
>P70040:FEN1A_XENLA Flap endonuclease 1-A - Xenopus laevis (African clawed frog)| Length = 382 Score = 406 bits (1043), Expect = e-112 Identities = 201/359 (55%), Positives = 265/359 (73%), Gaps = 1/359 (0%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MG+ GL KL+AD AP +++E +SYFGR++AVDASM IYQFLI V + G TL NE G+ Sbjct: 1 MGIHGLAKLIADVAPAAIKEHDIKSYFGRKVAVDASMCIYQFLIAVRQDG-NTLQNEEGE 59 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGD 457 TSHL GMF RTIR++E GIKPVYVFDGKPP+MK EL KR +R EA + L A EAG+ Sbjct: 60 TTSHLMGMFYRTIRMVEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLEAAEEAGE 119 Query: 458 TDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASED 637 + IEKF+KR VKVTKQHN++CK+LL LMG+P V+APCEAE+ CAAL K+ KVYA A+ED Sbjct: 120 VENIEKFTKRLVKVTKQHNEECKKLLTLMGIPYVDAPCEAEATCAALVKAGKVYAAATED 179 Query: 638 MDSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIK 817 MD+LTFG P +RHL ++K+P+ EF + ++++++ T +QF+DLCIL G DYC++I+ Sbjct: 180 MDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVIQDIGITHEQFVDLCILLGSDYCETIR 239 Query: 818 GIGGLTALKLIRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVT-LDIPELKWT 994 GIG A+ LIRQH +I+ I++NI+ KY +PE+W ++EA+ +F EP V DI ELKW Sbjct: 240 GIGPKRAIDLIRQHKTIDEIIDNIDLKKYPVPENWLHKEAKHLFLEPEVVDTDITELKWI 299 Query: 995 APDEEGLVNFLVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFFKPTVSTSVPLKRKE 1171 PDEEGLV F+ E FS+DR+ +K+ + S+QGRL+ FFK T S S KRKE Sbjct: 300 EPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKVTGSVS-STKRKE 357
>P39748:FEN1_HUMAN Flap endonuclease 1 - Homo sapiens (Human)| Length = 380 Score = 393 bits (1009), Expect = e-108 Identities = 193/359 (53%), Positives = 264/359 (73%), Gaps = 1/359 (0%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MG++GL KL+AD AP ++RE +SYFGR++A+DASMSIYQFLI V R G + L NE G+ Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGD 457 TSHL GMF RTIR++E GIKPVYVFDGKPP++K EL KR +R EA ++L +A AG Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119 Query: 458 TDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASED 637 +EKF+KR VKVTKQHND+CK LL LMG+P ++AP EAE+ CAAL K+ KVYA A+ED Sbjct: 120 EQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179 Query: 638 MDSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIK 817 MD LTFG+P +RHL ++K+P+ EF +++IL+EL +QF+DLCIL G DYC+SI+ Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239 Query: 818 GIGGLTALKLIRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSV-TLDIPELKWT 994 GIG A+ LI++H SIE I+ ++ +KY +PE+W ++EA ++F EP V + ELKW+ Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPESVELKWS 299 Query: 995 APDEEGLVNFLVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFFKPTVSTSVPLKRKE 1171 P+EE L+ F+ E FS++R+ ++++ ++ S+QGRL+ FFK T S S KRKE Sbjct: 300 EPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLS-SAKRKE 357
>Q58DH8:FEN1_BOVIN Flap endonuclease 1 - Bos taurus (Bovine)| Length = 380 Score = 392 bits (1007), Expect = e-108 Identities = 193/359 (53%), Positives = 264/359 (73%), Gaps = 1/359 (0%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MG++GL KL+AD AP ++RE +SYFGR++A+DASMSIYQFLI V R G + L NE G+ Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGD 457 TSHL GMF RTIR++E GIKPVYVFDGKPP++K EL KR +R EA ++L +A AG Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQEAQAAGA 119 Query: 458 TDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASED 637 +EKF+KR VKVTKQHND+CK LL LMG+P ++AP EAE+ CAAL K+ KVYA A+ED Sbjct: 120 EAEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179 Query: 638 MDSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIK 817 MD LTFG+P +RHL ++K+P+ EF +++IL+EL +QF+DLCIL G DYC+SI+ Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239 Query: 818 GIGGLTALKLIRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSV-TLDIPELKWT 994 GIG A+ LI++H SIE I+ ++ +KY +PE+W ++EA+++F EP V + ELKW+ Sbjct: 240 GIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVLDPESVELKWS 299 Query: 995 APDEEGLVNFLVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFFKPTVSTSVPLKRKE 1171 P+EE L+ F+ E FS++R+ + ++ ++ S+QGRL+ FFK T S S KRKE Sbjct: 300 EPNEEELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFKVTGSLS-SAKRKE 357
>P39750:RAD2_SCHPO DNA-repair protein rad2 - Schizosaccharomyces pombe (Fission yeast)| Length = 380 Score = 389 bits (998), Expect = e-107 Identities = 181/351 (51%), Positives = 256/351 (72%), Gaps = 1/351 (0%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MG+KGL ++L+++AP S++ ++YFGR++A+DASMS+YQFLI V + L NE G+ Sbjct: 1 MGIKGLAQVLSEHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQGE 60 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGD 457 TSHL GMF RT+R+++ GIKP +VFDGKPP +K EL KR A+ +A E+ + E G Sbjct: 61 TTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVGT 120 Query: 458 TDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASED 637 + +++F+KRTVKVT+QHND+ KRLL LMG+P V APCEAE+QCAAL +S KVYA ASED Sbjct: 121 AEMVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAASED 180 Query: 638 MDSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIK 817 MD+L F AP +RHL RK P+ E+ + K L L+ +++QF+DLCIL GCDYC+ I+ Sbjct: 181 MDTLCFQAPVLLRHLTFSEQRKEPISEYNIEKALNGLDMSVEQFVDLCILLGCDYCEPIR 240 Query: 818 GIGGLTALKLIRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVTL-DIPELKWT 994 G+G A++LIRQ+G+++ ++ ++ KY IPEDWPY++ARR+F + V + ELKW Sbjct: 241 GVGPARAVELIRQYGTLDRFVKEADRSKYPIPEDWPYEDARRLFLDAEVLPGEEIELKWK 300 Query: 995 APDEEGLVNFLVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFFKPTVST 1147 +PD +G++ FLVKE GF++DRV I +++ A QGRL+SFFKP S+ Sbjct: 301 SPDADGIIQFLVKEKGFNEDRVKLGINRLEKASKTIPQGRLDSFFKPVPSS 351
>P39749:FEN1_MOUSE Flap endonuclease 1 - Mus musculus (Mouse)| Length = 378 Score = 383 bits (984), Expect = e-105 Identities = 193/359 (53%), Positives = 263/359 (73%), Gaps = 1/359 (0%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MG+ GL KL+AD AP ++RE +SYFGR++A+DASMSIYQFLI V R G + L NE G+ Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGD 457 TS L GMF RTIR+ E GIKPVYVFDGKPP++K EL KR +R EA ++L +A EAG Sbjct: 60 TTS-LMGMFYRTIRM-ENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGM 117 Query: 458 TDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASED 637 + +EKF+KR VKVTKQHND+CK LL LMG+P ++AP EAE+ CAAL K+ KVYA A+ED Sbjct: 118 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATED 177 Query: 638 MDSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIK 817 MD LTFG+P +RHL ++K+P+ EF ++++L+EL +QF+DLCIL G DYC+SI+ Sbjct: 178 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIR 237 Query: 818 GIGGLTALKLIRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVT-LDIPELKWT 994 GIG A+ LI++H SIE I+ ++ KY +PE+W ++EA+++F EP V + ELKW+ Sbjct: 238 GIGAKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVVDPESVELKWS 297 Query: 995 APDEEGLVNFLVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFFKPTVSTSVPLKRKE 1171 P+EE LV F+ E FS++R+ ++++ ++ S+QGRL+ FFK T S S KRKE Sbjct: 298 EPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLS-SAKRKE 355
>P26793:RAD27_YEAST Structure-specific endonuclease RAD27 - Saccharomyces cerevisiae| (Baker's yeast) Length = 382 Score = 346 bits (888), Expect = 1e-94 Identities = 173/363 (47%), Positives = 249/363 (68%), Gaps = 9/363 (2%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MG+KGL +++++ P ++R+ +S+FGR++A+DASMS+YQFLI V + LTNEAG+ Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGD 457 TSHL GMF RT+R+++ GIKP YVFDGKPP++K EL KR ++R E ++L +A Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEA----- 115 Query: 458 TDAIEKFS--KRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVAS 631 T +EK +R VKV+K+HN++ ++LL LMG+P + AP EAE+QCA L K KVYA AS Sbjct: 116 TTELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAAS 175 Query: 632 EDMDSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDS 811 EDMD+L + P +RHL ++K P+ E + +L L+ T++QF+DLCI+ GCDYC+S Sbjct: 176 EDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCES 235 Query: 812 IKGIGGLTALKLIRQHGSIEGILENI-----NKDKYQIPEDWPYQEARRMFKEPSVTLDI 976 I+G+G +TALKLI+ HGSIE I+E I N K++IPEDWPY++AR +F +P V +D Sbjct: 236 IRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFLDPEV-IDG 294 Query: 977 PE--LKWTAPDEEGLVNFLVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFFKPTVSTS 1150 E LKW+ P E+ L+ +L + FS++RV I ++K QGRL+ FF+ T Sbjct: 295 NEINLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQVVPKTK 354 Query: 1151 VPL 1159 L Sbjct: 355 EQL 357
>Q8ZYN2:FEN_PYRAE Flap structure-specific endonuclease - Pyrobaculum aerophilum| Length = 346 Score = 249 bits (635), Expect = 3e-65 Identities = 150/353 (42%), Positives = 211/353 (59%), Gaps = 9/353 (2%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MGV L KL+ RE K ES G+ IA+DA ++YQFL + + L + AG Sbjct: 1 MGVTELGKLIGKEV---RREVKLESLSGKCIALDAYNALYQFLASIRQPDGTPLMDRAGR 57 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGD 457 +TSHL G+F RTI LLEAGI+PVYVFDGKPPE K E+ +R R +A EE+ +A++ G Sbjct: 58 ITSHLSGLFYRTINLLEAGIRPVYVFDGKPPEFKLAEIEERRKTREKAMEEVLRAIKEGR 117 Query: 458 TDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASED 637 + + K++KR V +T + D+ KRLL MGVP V+AP E E+Q A + + +AV S+D Sbjct: 118 REDVAKYAKRAVFITSEMVDEAKRLLSYMGVPWVQAPSEGEAQAAYMARKGHCWAVGSQD 177 Query: 638 MDSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKILEELEFTM--------DQFIDLCILCG 793 DSL FG+P+ VR+L RKI E+ + EL+ + +Q IDL IL G Sbjct: 178 YDSLLFGSPKLVRNLAVSPKRKIGEEVIELTPEIIELDAVLRALRLKNREQLIDLAILLG 237 Query: 794 CDY-CDSIKGIGGLTALKLIRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVTL 970 DY D + G+G ALKLI + GS+E +LE + K Y P D E ++ F P VT Sbjct: 238 TDYNPDGVPGVGPQKALKLIWEFGSLEKLLETVLKGAY-FPID--PLEIKKFFLNPPVT- 293 Query: 971 DIPELKWTAPDEEGLVNFLVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFF 1129 D + PDE L +FL++E+ FS++RV+KA+E+++ A+ K L+SFF Sbjct: 294 DQYATEVRDPDEAALKDFLIREHDFSEERVSKALERLRKARGKLKTSSLDSFF 346
>O93634:FEN_PYRFU Flap structure-specific endonuclease - Pyrococcus furiosus| Length = 340 Score = 248 bits (634), Expect = 4e-65 Identities = 143/340 (42%), Positives = 200/340 (58%), Gaps = 13/340 (3%) Frame = +2 Query: 152 REQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEA 331 +E + E+ +G++IA+DA +IYQFL + + L + G +TSHL G+F RTI L+EA Sbjct: 12 KEIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEA 71 Query: 332 GIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQH 511 GIKPVYVFDG+PPE KK EL KR R EA E+ +A+E G+ + K+++R +V + Sbjct: 72 GIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEML 131 Query: 512 NDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDP 691 +D K+LL LMG+P+V+AP E E+Q A + VYA AS+D DSL FGAPR VR+L Sbjct: 132 IEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTIT 191 Query: 692 SSRKIPVMEFEV---------AKILEELEFTMDQFIDLCILCGCDY-CDSIKGIGGLTAL 841 RK+P V ++L+EL+ T ++ I+L IL G DY IKGIG AL Sbjct: 192 GKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVGTDYNPGGIKGIGLKKAL 251 Query: 842 KLIRQHGSIEGILENINKD---KYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEG 1012 +++R +KD K+Q D + F P VT D L W PDEEG Sbjct: 252 EIVRH-----------SKDPLAKFQKQSDVDLYAIKEFFLNPPVT-DNYNLVWRDPDEEG 299 Query: 1013 LVNFLVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFFK 1132 ++ FL E+ FS++RV +E++K A Q LES+FK Sbjct: 300 ILKFLCDEHDFSEERVKNGLERLKKAIKSGKQSTLESWFK 339
>Q5JGN0:FEN_PYRKO Flap structure-specific endonuclease - Pyrococcus kodakaraensis| (Thermococcus kodakaraensis) Length = 340 Score = 246 bits (628), Expect = 2e-64 Identities = 143/339 (42%), Positives = 197/339 (58%), Gaps = 13/339 (3%) Frame = +2 Query: 152 REQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEA 331 +E + ES +G+++A+DA ++YQFL + + L + G +TSHL G F RTI L+EA Sbjct: 12 KEIELESLYGKKVAIDAFNAMYQFLSTIRQRDGTPLMDSQGRITSHLSGFFYRTINLMEA 71 Query: 332 GIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQH 511 GIKP YVFDGKPP+ KK EL KR R EA E+ +A+E GD + +K++ R +V ++ Sbjct: 72 GIKPAYVFDGKPPDFKKRELEKRREAREEAEEKWYEALEKGDLEEAKKYAMRATRVNEEL 131 Query: 512 NDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDP 691 +D K+LL LMG+PVV+AP E E+Q A + VYA AS+D DSL FGAPR VR+L Sbjct: 132 INDAKKLLELMGIPVVQAPSEGEAQAAYMAAKKAVYASASQDYDSLLFGAPRLVRNLTIT 191 Query: 692 SSRKIPVMEFEV---------AKILEELEFTMDQFIDLCILCGCDY-CDSIKGIGGLTAL 841 RK+P V ++L+EL ++ I+L IL G DY IKGIG AL Sbjct: 192 GRRKLPGKNVYVEVKPELVVLEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPKKAL 251 Query: 842 KLIRQHGSIEGILENINKD---KYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEG 1012 ++++ KD KYQ D + F P VT D ELKW PDEEG Sbjct: 252 TIVKR-----------TKDPLAKYQKESDVDLYAIKEFFLNPPVTDDY-ELKWREPDEEG 299 Query: 1013 LVNFLVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFF 1129 ++ FL E+ FS++RV +E++K A Q LES+F Sbjct: 300 ILKFLCDEHDFSEERVKNGLERLKKAVKAGKQRTLESWF 338
>Q9V0P9:FEN_PYRAB Flap structure-specific endonuclease - Pyrococcus abyssi| Length = 343 Score = 243 bits (621), Expect = 1e-63 Identities = 140/339 (41%), Positives = 197/339 (58%), Gaps = 13/339 (3%) Frame = +2 Query: 152 REQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEA 331 +E + E+ +G++IA+DA +IYQFL + + L + G +TSHL G+F RTI L+EA Sbjct: 12 KEIELENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEA 71 Query: 332 GIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQH 511 GIKPVYVFDGKPP KK EL KR R EA + +A+ GD + K+++R KV + Sbjct: 72 GIKPVYVFDGKPPAFKKKELEKRREAREEAEIKWKEALAKGDIEEARKYAQRATKVNEML 131 Query: 512 NDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDP 691 +D K+LL+LMG+P+V+AP E E+Q A + VYA AS+D DSL FG PR VR+L Sbjct: 132 IEDAKKLLQLMGIPIVQAPSEGEAQAAYMAGKGDVYASASQDYDSLLFGTPRLVRNLTIT 191 Query: 692 SSRKIPVMEFEV---------AKILEELEFTMDQFIDLCILCGCDY-CDSIKGIGGLTAL 841 RK+P + V ++L+EL+ T ++ I+L IL G DY IKGIG AL Sbjct: 192 GKRKMPGKDIYVEIKPELIVLEEVLKELKITREKLIELAILVGTDYNPGGIKGIGPKKAL 251 Query: 842 KLIRQHGSIEGILENINKD---KYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEG 1012 ++++ +KD K+Q D + F P T D LKW PDEEG Sbjct: 252 EIVK-----------YSKDPLAKFQRQSDVDLYAIKEFFLNPPTTDDY-SLKWKEPDEEG 299 Query: 1013 LVNFLVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFF 1129 ++ FL E+ FS++RV +E++K A Q LES+F Sbjct: 300 IIRFLCDEHDFSEERVKNGLERLKKAIKAGKQSTLESWF 338
>O50123:FEN_PYRHO Flap structure-specific endonuclease - Pyrococcus horikoshii| Length = 343 Score = 240 bits (612), Expect = 1e-62 Identities = 138/348 (39%), Positives = 201/348 (57%), Gaps = 13/348 (3%) Frame = +2 Query: 125 LADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMF 304 + D P+ +E E+ +G++IA+DA +IYQFL + + L + G +TSHL G+F Sbjct: 5 IGDLVPR--KEIDLENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLF 62 Query: 305 SRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSK 484 RTI L+EAGIKP YVFDGKPPE K+ EL KR R EA + +A+ G+ + K+++ Sbjct: 63 YRTINLMEAGIKPAYVFDGKPPEFKRKELEKRREAREEAELKWKEALAKGNLEEARKYAQ 122 Query: 485 RTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAP 664 R KV + +D K+LL+LMG+P+++AP E E+Q A + VYA AS+D DSL FGAP Sbjct: 123 RATKVNEMLIEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAP 182 Query: 665 RFVRHLMDPSSRKIPVMEFEVA---------KILEELEFTMDQFIDLCILCGCDY-CDSI 814 R +R+L RK+P + V ++L+EL+ T ++ I+L IL G DY + Sbjct: 183 RLIRNLTITGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGV 242 Query: 815 KGIGGLTALKLIRQHGSIEGILENINKD---KYQIPEDWPYQEARRMFKEPSVTLDIPEL 985 KGIG AL+++R ++D K+Q D + F P VT + L Sbjct: 243 KGIGPKKALEIVR-----------YSRDPLAKFQRQSDVDLYAIKEFFLNPPVTNEY-SL 290 Query: 986 KWTAPDEEGLVNFLVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFF 1129 W PDEEG++ FL E+ FS++RV IE++K A Q LES+F Sbjct: 291 SWKEPDEEGILKFLCDEHNFSEERVKNGIERLKKAIKAGRQSTLESWF 338
>Q8TXU4:FEN_METKA Flap structure-specific endonuclease - Methanopyrus kandleri| Length = 348 Score = 232 bits (592), Expect = 3e-60 Identities = 136/340 (40%), Positives = 207/340 (60%), Gaps = 15/340 (4%) Frame = +2 Query: 155 EQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEAG 334 E + GR IA+DA ++YQFL + + G L + G +TSHL G+ RT+ L+E G Sbjct: 14 ETDLRALAGREIAIDAFNALYQFLTTIMKDG-RPLMDSRGRITSHLNGLLYRTVNLVEEG 72 Query: 335 IKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQHN 514 IKPVYVFDG+PP++K++ L +R ++ EA E+L +A + EK++++ ++ + Sbjct: 73 IKPVYVFDGEPPDLKRETLERRRERKEEAMEKLRRAKTKEER---EKYARQVARLDESLV 129 Query: 515 DDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDPS 694 +D KRLL LMG+P V+AP E E+QCA + + V+A S+D DSL FG+PR VR++ Sbjct: 130 EDAKRLLDLMGIPWVQAPSEGEAQCAYMARCGDVWATGSQDYDSLLFGSPRLVRNITIVG 189 Query: 695 SRKIP----VME-----FEVAKILEELEF-TMDQFIDLCILCGCDY-CDSIKGIGGLTAL 841 RK P ++E + +L++L + +Q +DL IL G DY D + GIG AL Sbjct: 190 KRKHPHTGEIIEVKPEIMRLEDVLDQLGLESREQLVDLAILLGTDYNPDGVPGIGPKRAL 249 Query: 842 KLIRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVN 1021 +LIR++GS++ + + K + ++ RR+F EP VT D EL W PDEEGLV Sbjct: 250 QLIRKYGSLDELKDTDIWPKIERHLPVEPEKLRRLFLEPEVTDDY-ELDWDEPDEEGLVE 308 Query: 1022 FLVKENGFSQDRVTKAIEKIKSAKNKSSQG----RLESFF 1129 FLV+E FS+DRV +A+E++K A + +G L++FF Sbjct: 309 FLVEERDFSEDRVRRAVERLKEALQELRKGGRQETLDAFF 348
>Q8TIY5:FEN_METAC Flap structure-specific endonuclease - Methanosarcina acetivorans| Length = 338 Score = 228 bits (581), Expect = 6e-59 Identities = 133/335 (39%), Positives = 193/335 (57%), Gaps = 9/335 (2%) Frame = +2 Query: 152 REQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEA 331 R+ + R +AVDA +++QFL ++ + L N G VTSHL G+ RT L+EA Sbjct: 12 RKIELSDLSNRVVAVDAFNTLHQFLSIIRQRDGSPLVNSRGKVTSHLSGLLYRTASLVEA 71 Query: 332 GIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQH 511 GIKPV++FDGKPP++K + L +R R + E+ A GD +A K+++ + +V ++ Sbjct: 72 GIKPVFIFDGKPPDLKSETLSRRKEVRETSLEKWENAKAEGDLEAAYKYAQASSRVDQEI 131 Query: 512 NDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDP 691 +D K LL +MG+P ++APCE E+Q A + VAS+D DS FGAP+ VR++ Sbjct: 132 VEDSKYLLGIMGIPWIQAPCEGEAQAAHMVLKKDADYVASQDYDSFLFGAPKVVRNMAVT 191 Query: 692 SSRKIP------VMEFEVAKI---LEELEFTMDQFIDLCILCGCDYCDSIKGIGGLTALK 844 RK+P +E EV ++ L LE DQ ID+ I G DY ++ +G TALK Sbjct: 192 GKRKLPGKNVYVDVELEVIELEETLRALEINRDQLIDIAICVGTDYNKGLEKVGPKTALK 251 Query: 845 LIRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVNF 1024 LI++HG I +L KD E R++F P VT D E+KWT PD E L+ F Sbjct: 252 LIKKHGDIHAVLR--EKDM----EIEGLDRIRKLFTHPEVTEDY-EIKWTKPDSEKLIKF 304 Query: 1025 LVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFF 1129 L +EN FS DRV KA E++K+A + Q L+ +F Sbjct: 305 LCEENDFSTDRVEKAAERLKAASG-ARQKTLDQWF 338
>Q8PYF6:FEN_METMA Flap structure-specific endonuclease - Methanosarcina mazei| (Methanosarcina frisia) Length = 338 Score = 222 bits (566), Expect = 3e-57 Identities = 126/328 (38%), Positives = 182/328 (55%), Gaps = 9/328 (2%) Frame = +2 Query: 152 REQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEA 331 R+ + R +AVDA +++QFL ++ + L N G VTSHL G+ RT L+EA Sbjct: 12 RKIELSDLSNRVVAVDAFNTLHQFLSIIRQRDGSPLVNSQGKVTSHLSGLLYRTASLVEA 71 Query: 332 GIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQH 511 GIKPV+VFDGKPPEMK L +R R + E+ A G+ +A K+++ + KV + Sbjct: 72 GIKPVFVFDGKPPEMKTGTLNRRKEIRESSKEKWENAKAEGNLEAAYKYAQASSKVDQDI 131 Query: 512 NDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDP 691 +D K LL +MG+P ++APCE E+Q A + VAS+D DS FGAP VR+L Sbjct: 132 IEDSKYLLDIMGIPWIQAPCEGEAQAAHMVLKKDADCVASQDYDSFLFGAPTVVRNLAAT 191 Query: 692 SSRKIP---------VMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIKGIGGLTALK 844 RK+P + E+ + L+ L DQ ID+ I G DY ++ +G TALK Sbjct: 192 GKRKLPGKNVYVDVELEMIELEETLDSLGINRDQLIDIAICVGTDYNKGLEKVGPKTALK 251 Query: 845 LIRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVNF 1024 LI++HG+I ++ + + + +F P VT D E+KW PD E L+NF Sbjct: 252 LIKKHGNIHAVIREKGMEIEAL------DSIKELFTHPDVTDDY-EIKWGKPDSEKLINF 304 Query: 1025 LVKENGFSQDRVTKAIEKIKSAKNKSSQ 1108 L EN FS+DRV KA +++K+A Q Sbjct: 305 LCDENDFSEDRVVKAADRLKAASGARQQ 332
>Q980U8:FEN_SULSO Flap structure-specific endonuclease - Sulfolobus solfataricus| Length = 349 Score = 222 bits (565), Expect = 4e-57 Identities = 132/349 (37%), Positives = 196/349 (56%), Gaps = 14/349 (4%) Frame = +2 Query: 125 LADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMF 304 LAD RE F G+R+++D ++YQFL + + L + G VTSHL G+F Sbjct: 3 LADLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLF 62 Query: 305 SRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSK 484 RTI +LE G+ P+YVFDGKPPE K +EL +R + EA +L +A G + + K+S+ Sbjct: 63 YRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQ 122 Query: 485 RTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAP 664 ++++ ++ K+LLR MG+P+V+AP E E++ A L K +A AS+D D++ FGA Sbjct: 123 AILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAK 182 Query: 665 RFVRHLMDPSSRKIPVME---------FEVAKILEELEFTMDQFIDLCILCGCDY-CDSI 814 R VR+L RK+P + E +L++L T +Q ID+ IL G DY D I Sbjct: 183 RLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGI 242 Query: 815 KGIGGLTALKLIRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWT 994 +GIG ALK+I+++G IE +E K I ++ E R +F P V L Sbjct: 243 RGIGPERALKIIKKYGKIEKAMEYGEISKKDI--NFNIDEIRGLFLNPQVVKPEEALDLN 300 Query: 995 APDEEGLVNFLVKENGFSQDRVTKAIEK----IKSAKNKSSQGRLESFF 1129 P+ E ++N LV E+ FS++RV IE+ IK AK S Q L+ +F Sbjct: 301 EPNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGLDRWF 349
>O27670:FEN_METTH Flap structure-specific endonuclease - Methanobacterium| thermoautotrophicum Length = 328 Score = 215 bits (548), Expect = 4e-55 Identities = 124/328 (37%), Positives = 192/328 (58%) Frame = +2 Query: 146 SMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLL 325 S R + E GR +AVDA+ ++YQFL + + L + G VTSHL G+ RT ++ Sbjct: 10 SPRRIRLEDLRGRTVAVDAANTLYQFLSSIRQRDGTPLMDSRGRVTSHLSGILYRTAAVM 69 Query: 326 EAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTK 505 E I+ +YVFDG+ +K + + +R R ++ E +A+E GD D +K++ R+ +++ Sbjct: 70 EREIRVIYVFDGRSHHLKGETVSRRADIRKKSEVEWKRALEEGDIDRAKKYAVRSSRMSS 129 Query: 506 QHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLM 685 + + KRLL L+G+P V+AP E E+Q + + K +AVAS+D D L FGAPR VR+L Sbjct: 130 EILESSKRLLELLGIPYVQAPGEGEAQASYMVKMGDAWAVASQDYDCLLFGAPRVVRNLT 189 Query: 686 DPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIKGIGGLTALKLIRQHGS 865 + P + E+ L EL + Q +D+ +L G D+ + +KGIG LKLIR+ G Sbjct: 190 LSGKLEDPEI-IELESTLRELSISHTQLVDMALLVGTDFNEGVKGIGARRGLKLIREKGD 248 Query: 866 IEGILENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVNFLVKENGF 1045 I ++ ++ D P Q RR+F EP V+ D E++W PD EG++ FL E+GF Sbjct: 249 IFKVIRDLEADIGGDP-----QVLRRIFLEPEVSEDY-EIRWRKPDVEGVIEFLCTEHGF 302 Query: 1046 SQDRVTKAIEKIKSAKNKSSQGRLESFF 1129 S+DRV A++K + A S+Q LE +F Sbjct: 303 SEDRVRAALKKFEGA--SSTQKSLEDWF 328
>Q4JAN1:FEN_SULAC Flap structure-specific endonuclease - Sulfolobus acidocaldarius| Length = 349 Score = 215 bits (547), Expect = 5e-55 Identities = 124/341 (36%), Positives = 200/341 (58%), Gaps = 15/341 (4%) Frame = +2 Query: 152 REQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEA 331 RE G++I++DA +IYQFL + + L + G +TSHL G+F RTI ++E+ Sbjct: 12 REINLNEMKGKKISIDAYNTIYQFLAAIRQPDGTPLIDSKGRITSHLNGLFYRTISIIES 71 Query: 332 GIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQH 511 GI P++VFDGKPPE K +E+ +R + EA ++L KA G+ I K+++ V+++ + Sbjct: 72 GIIPIFVFDGKPPEKKSEEIERRKRAKEEAEKKLEKAKLEGEYREIRKYAQAAVRLSNEM 131 Query: 512 NDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDP 691 ++ K+LL MG+PVV+AP E E++ A + D +A AS+D DSL FGA R VR++ Sbjct: 132 VEESKKLLDAMGIPVVQAPGEGEAEAAYINSIDLSWAAASQDYDSLLFGAKRLVRNITIS 191 Query: 692 SSRKIPVME---------FEVAKILEELEFTMDQFIDLCILCGCDY-CDSIKGIGGLTAL 841 RK+P + E+ +L++L +Q ID+ IL G DY D +KGIG TAL Sbjct: 192 GKRKLPNKDVYVEIKPELIELESLLKKLGINREQLIDIAILIGTDYNPDGVKGIGVKTAL 251 Query: 842 KLIRQHGSIEGILENINKDKYQIPE-DWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLV 1018 ++I+++ +IE +E K + Q+ + ++ +E R++F P V L+ +E ++ Sbjct: 252 RIIKKYNNIENAIE---KGEIQLSKINFDIREIRKLFITPEVKKPTERLELAECNEREII 308 Query: 1019 NFLVKENGFSQDRVTKAIEK----IKSAKNKSSQGRLESFF 1129 LVK + F++DRV IE+ IK AK+ Q L+ +F Sbjct: 309 ELLVKNHDFNEDRVNNGIERLKKAIKEAKSVEKQTGLDQWF 349
>Q58839:FEN_METJA Flap structure-specific endonuclease - Methanococcus jannaschii| Length = 326 Score = 214 bits (544), Expect = 1e-54 Identities = 121/325 (37%), Positives = 197/325 (60%), Gaps = 2/325 (0%) Frame = +2 Query: 164 FESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEAGIKP 343 FE G+++A+D ++YQFL + L N G++TS G+F +TI LLE I P Sbjct: 16 FEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDITP 75 Query: 344 VYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQHNDDC 523 ++VFDG+PP++K+ R + +A ++ +A++ D + K++KR +T + ++C Sbjct: 76 IWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENC 135 Query: 524 KRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDPSSRK 703 K LL LMG+P VEAP E E+Q + + K V+AV S+D D+L +GAPR VR+L ++++ Sbjct: 136 KYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNL--TTTKE 193 Query: 704 IPVMEFEVAKILEELEFTMDQFIDLCILCGCDY-CDSIKGIGGLTALKLIRQHGSIEGIL 880 +P + E+ ++LE+L ++D ID+ I G DY +KGIG A +L+R G+ Sbjct: 194 MPEL-IELNEVLEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVR-----SGVA 247 Query: 881 ENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVNFLVKENGFSQDRV 1060 +++ K + + Y E +R+FKEP VT D L PD+EG++ FLV EN F+ DRV Sbjct: 248 KDVLKKEVEY-----YDEIKRIFKEPKVT-DNYSLSLKLPDKEGIIKFLVDENDFNYDRV 301 Query: 1061 TKAIEKIKS-AKNKSSQGRLESFFK 1132 K ++K+ + NK+ Q L+++FK Sbjct: 302 KKHVDKLYNLIANKTKQKTLDAWFK 326
>Q976H6:FEN_SULTO Flap structure-specific endonuclease - Sulfolobus tokodaii| Length = 351 Score = 209 bits (531), Expect = 4e-53 Identities = 124/351 (35%), Positives = 203/351 (57%), Gaps = 16/351 (4%) Frame = +2 Query: 125 LADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMF 304 LA+ + +E F G++I++DA ++YQFL + + L + G VTSHL G+F Sbjct: 3 LAELVEEIKKELSFAELKGKKISIDAYNALYQFLAAIRQPDGTPLMDSQGRVTSHLNGLF 62 Query: 305 SRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGD--TDAIEKF 478 RTI +LE GI P+YVFDGKPPE K EL +R + EA ++L +A G T ++K+ Sbjct: 63 YRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTEGSIKTSELKKY 122 Query: 479 SKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFG 658 ++ ++++T + ++ K LL+ MG+PVV+AP E E++ A + +A AS+D DSL FG Sbjct: 123 AQMSIRLTNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDYDSLLFG 182 Query: 659 APRFVRHLMDPSSRKIPVME---------FEVAKILEELEFTMDQFIDLCILCGCDY-CD 808 A R +R+L RK+P + E+ +L++L T +Q ID+ I+ G DY D Sbjct: 183 AKRLIRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVGTDYNPD 242 Query: 809 SIKGIGGLTALKLIRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELK 988 IKG G TA ++I+++GS+E +E K ++ ++ +E R +F +P V L+ Sbjct: 243 GIKGYGVKTAYRIIKKYGSLEKAIEKGEIPKIKV--NFNVEEIRSLFLKPQVVEPKENLE 300 Query: 989 WTAPDEEGLVNFLVKENGFSQDRVTKAIEKIKSAKNK----SSQGRLESFF 1129 D +++ LVK + F+++RV IE+++ AK + S Q L+ +F Sbjct: 301 LVDCDSNKILDILVKTHDFNEERVKNGIERLEKAKREAKGASRQTGLDQWF 351
>O29975:FEN_ARCFU Flap structure-specific endonuclease - Archaeoglobus fulgidus| Length = 336 Score = 207 bits (528), Expect = 8e-53 Identities = 125/334 (37%), Positives = 188/334 (56%), Gaps = 9/334 (2%) Frame = +2 Query: 155 EQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEAG 334 E + E + G++IAVDA ++YQF+ ++ + L + G +TSHL G+ R ++E G Sbjct: 13 EVELEYFSGKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVG 72 Query: 335 IKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQHN 514 I+PV+VFDG+PPE KK E+ +R +R EA E A++AGD DA +K+++ +V + Sbjct: 73 IRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGDKDA-KKYAQAAGRVDEYIV 131 Query: 515 DDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDPS 694 D K LL MG+P V+AP E E+Q A + V S+D DSL FG+PR R+L Sbjct: 132 DSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITG 191 Query: 695 SRKIPVMEFEV---------AKILEELEFTMDQFIDLCILCGCDYCDSIKGIGGLTALKL 847 RK+P V L+ L T +Q ID+ IL G DY + +KG+G AL Sbjct: 192 KRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKALNY 251 Query: 848 IRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVNFL 1027 I+ +G I L+ + + + +E R F P VT D +++ PD E + FL Sbjct: 252 IKTYGDIFRALKALKVNIDHV------EEIRNFFLNPPVTDDY-RIEFREPDFEKAIEFL 304 Query: 1028 VKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFF 1129 +E+ FS++RV KA+EK+K+ KS+Q LE +F Sbjct: 305 CEEHDFSRERVEKALEKLKAL--KSTQATLERWF 336
>Q9YFY5:FEN_AERPE Flap structure-specific endonuclease - Aeropyrum pernix| Length = 350 Score = 203 bits (516), Expect = 2e-51 Identities = 122/343 (35%), Positives = 194/343 (56%), Gaps = 13/343 (3%) Frame = +2 Query: 140 PKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIR 319 P++ RE + + G +A+DA +YQFL + + L + G VTSHL G+F RTI Sbjct: 11 PEARREVELRALSGYVLALDAYNMLYQFLTAIRQPDGTPLLDREGRVTSHLSGLFYRTIN 70 Query: 320 LLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKV 499 L+E GIKPVYVFDGKPPEMK E+ +R ++ EA +AVEAG+ + K++ ++ Sbjct: 71 LVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAVEAGEVEEARKYAMMAARL 130 Query: 500 TKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRH 679 T ++ K LL MG+P V+AP E E+Q A + + +A S+D DSL FG+PR VR+ Sbjct: 131 TSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWATGSQDYDSLLFGSPRLVRN 190 Query: 680 LMDPSSRKIPVME---------FEVAKILEELEFTMDQFIDLCILCGCDY-CDSIKGIGG 829 L RK+P + E+ +L +L T +Q I + IL G DY ++G G Sbjct: 191 LAITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAVGILLGTDYNPGGVRGYGP 250 Query: 830 LTALKLIRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEE 1009 TAL+L++ G +L ++ + +Y D+ ++ F P VT D ++++ PD++ Sbjct: 251 KTALRLVKSLGDPMKVLASVPRGEYD--PDY-LRKVYEYFLNPPVTDDY-KIEFRKPDQD 306 Query: 1010 GLVNFLVKENGFSQDRVTKAIEKIKSA---KNKSSQGRLESFF 1129 + LV+ + F+ +RV +A+E++ A K + Q RL+ +F Sbjct: 307 KVREILVERHDFNPERVERALERLGKAYREKLRGRQSRLDMWF 349
>P61942:FEN_NANEQ Flap structure-specific endonuclease - Nanoarchaeum equitans| Length = 339 Score = 199 bits (507), Expect = 2e-50 Identities = 121/335 (36%), Positives = 188/335 (56%), Gaps = 9/335 (2%) Frame = +2 Query: 152 REQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEA 331 +E +F+ FG+ IA+DA ++YQFL + + G E L + G +TSHL G+F RTI LLE Sbjct: 14 KEIEFKQLFGKVIAIDAFNALYQFLFSIRQDG-EPLRDSKGRITSHLSGLFYRTINLLEY 72 Query: 332 GIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQH 511 GIKP+YVFDG PP+ K KR + + + +A++ G+ K++K K+ Sbjct: 73 GIKPIYVFDGTPPKFKIVAWEKRKKHKEQLESKYKEALKKGNIQEAIKYAKSLGKLDSYM 132 Query: 512 NDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDP 691 ++ K+LL MG+P V+AP E E++ A L K S+D DSL FG+PR VR++ Sbjct: 133 VEEAKKLLEAMGIPYVQAPSEGEAEAAYLTKKGVSDYCGSQDYDSLLFGSPRVVRNITIS 192 Query: 692 SSRKIPVME---------FEVAKILEELEFTMDQFIDLCILCGCDYCDSIKGIGGLTALK 844 RK+P E+ +L + T +Q I + +L G DY + + GIG TA++ Sbjct: 193 EKRKLPGKNIYVEVKPEVIELEAVLNYWKITREQLIAIAMLLGTDYNEKVPGIGPKTAIE 252 Query: 845 LIRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVNF 1024 ++++ G ++E Y+IP +E F P V +D E KW P++E + Sbjct: 253 IVKRFGDPIKVIE-----YYKIPNG---KEIFEFFLNPPV-IDF-EPKWGKPNKELIFKI 302 Query: 1025 LVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFF 1129 LV+E+ F+ +RV +AIE+++ A NK +Q L SFF Sbjct: 303 LVEEHDFNPERVERAIERLEKALNKINQKTLFSFF 337
>Q9HJD4:FEN_THEAC Flap structure-specific endonuclease - Thermoplasma acidophilum| Length = 336 Score = 180 bits (456), Expect = 2e-44 Identities = 115/333 (34%), Positives = 180/333 (54%), Gaps = 9/333 (2%) Frame = +2 Query: 155 EQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEAG 334 E + + ++D +YQ L V + L + G+VTSHL G+F RTI LLE Sbjct: 13 ETSLKDQGNQTFSIDTYNILYQLLSNVRQYDGMPLMDSHGNVTSHLYGIFYRTINLLENR 72 Query: 335 IKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQHN 514 I+PVYVFDGKP +K + +R + +A EL +A+E G+ D + ++ R +T Q Sbjct: 73 IRPVYVFDGKPSPLKNRTISERQMMKEKAKAELEEAIERGEED-LRQYYSRINYITPQIV 131 Query: 515 DDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDPS 694 DD K+LL MG+P V+AP E E+Q + + K + V V S+D D L FGA + +R+ Sbjct: 132 DDTKKLLDYMGIPYVDAPSEGEAQASYMTKKN-VDGVISQDYDCLLFGARKILRNFAIYG 190 Query: 695 SRKIPVMEFE---------VAKILEELEFTMDQFIDLCILCGCDYCDSIKGIGGLTALKL 847 RK+P + ++L + DQ I + IL G D+ + IKGIG AL L Sbjct: 191 RRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVGTDFNEGIKGIGAKKALAL 250 Query: 848 IRQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVNFL 1027 I++ G I+ +L++I K+ + E + FK P V +D + K+ PD + + +FL Sbjct: 251 IKKEGDIKSVLKHIGKNIENLDEIIDF------FKNPPV-VDY-DFKFRKPDTDAIEHFL 302 Query: 1028 VKENGFSQDRVTKAIEKIKSAKNKSSQGRLESF 1126 E+ FS++R+ +E ++ S+Q RL+SF Sbjct: 303 CDEHDFSRERIRDHLESLRKNDQASTQFRLDSF 335
>Q6L2I9:FEN_PICTO Flap structure-specific endonuclease - Picrophilus torridus| Length = 338 Score = 175 bits (443), Expect = 6e-43 Identities = 115/336 (34%), Positives = 171/336 (50%), Gaps = 11/336 (3%) Frame = +2 Query: 155 EQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEAG 334 E + G ++VDA IYQFL + E L + G++TSHL G+F RT LLE Sbjct: 13 ETSLKDNSGSIVSVDAYNIIYQFLSSIRGDDGEPLKDSNGNITSHLSGIFYRTSNLLENN 72 Query: 335 IKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQHN 514 IKPVYVFDGKP +K + L +R + + +L +A+ + D I S R +T Sbjct: 73 IKPVYVFDGKPFHLKSETLRERSLIKEKNIMKLEEAIASNDDAKIRSLSSRINYITDDIV 132 Query: 515 DDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDPS 694 ++ K LL LMG+P V+AP E E+Q + + V AV S+D D L FGA R +R+ Sbjct: 133 NESKTLLNLMGLPYVQAPSEGEAQASYMTLKGDVNAVVSQDYDCLLFGAKRILRNFTVYG 192 Query: 695 SRKIPVME---------FEVAKILEELEFTMDQFIDLCILCGCDYCDSIKGIGGLTALKL 847 R+I ++ + L L + +Q I + IL G D+ +KGIG TAL L Sbjct: 193 RRRIAGTSRTINVNPEIIDLNENLSNLGISREQLIYIGILTGTDFNPGVKGIGAKTALSL 252 Query: 848 IRQHGSIEGI--LENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVN 1021 I+++ I + ++NI D E F P + E+K+ PD +G+++ Sbjct: 253 IKKYNDIYSVIKIKNIGIDN--------LDEIIEFFMNP--PHNDYEIKFNEPDFDGIID 302 Query: 1022 FLVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFF 1129 FL ++ FS+ RV + +EKI K Q L+ FF Sbjct: 303 FLCGKHNFSESRVNETLEKISRNYKKDHQSSLDRFF 338
>Q97B98:FEN_THEVO Flap structure-specific endonuclease - Thermoplasma volcanium| Length = 335 Score = 170 bits (430), Expect = 2e-41 Identities = 111/321 (34%), Positives = 174/321 (54%), Gaps = 9/321 (2%) Frame = +2 Query: 191 AVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPP 370 A+D +YQ L V + L + +G+VTSHL G+F RT+ L+E GIKP++VFDGKP Sbjct: 25 AIDTYNILYQLLSNVRQYDGTPLMDSSGNVTSHLYGIFYRTVNLVENGIKPIFVFDGKPS 84 Query: 371 EMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQHNDDCKRLLRLMGV 550 +K L R + +A EL +A+ G+ + ++++ R +T Q +D K LL MG+ Sbjct: 85 PLKNRTLEIRQLAKEKAKAELEEAISRGE-ENLKQYYSRINYITPQIVNDTKELLTYMGI 143 Query: 551 PVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDPSSRKIPVME---- 718 P V+AP E E+Q + + + D V S+D D L FGA + +R+ RK+P Sbjct: 144 PYVDAPSEGEAQASYMTRKD-ADGVISQDYDCLLFGAKKILRNFAIYGRRKVPRKNVYRT 202 Query: 719 -----FEVAKILEELEFTMDQFIDLCILCGCDYCDSIKGIGGLTALKLIRQHGSIEGILE 883 + ++L++ DQ I++ IL G D+ + IKGIG AL LI++ G+I+ +L Sbjct: 203 VYPEYVMLDEVLKKNGINQDQLIEIGILVGTDFNEGIKGIGAKKALALIKKEGNIKAVLN 262 Query: 884 NINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVNFLVKENGFSQDRVT 1063 I K+ + E + FK P V +D+ + + PD + + FL + FS+DR+ Sbjct: 263 KIGKNIENLDEIIDF------FKNPPV-VDV-KYVFGKPDPKKIEEFLCVVHDFSRDRIL 314 Query: 1064 KAIEKIKSAKNKSSQGRLESF 1126 + I NKS Q RL+SF Sbjct: 315 EHINTYVKYYNKSVQFRLDSF 335
>Q5UQW7:YL386_MIMIV Putative endonuclease L386 - Mimivirus| Length = 473 Score = 145 bits (367), Expect = 4e-34 Identities = 94/295 (31%), Positives = 148/295 (50%), Gaps = 29/295 (9%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMRE-----------------------QKFESYFGRRIAVDASM 208 MG+KGL KLL + + +E +F G +A+DAS+ Sbjct: 1 MGIKGLFKLLREKIKEEEKEGLKRKELGIPDDDTKIKYKPLTVYRFRRLKGITVAIDASL 60 Query: 209 SIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDE 388 +IY+ + ++G +L N G +TSHL+G+F + L+ I P+YVFDGK P++K Sbjct: 61 AIYRMVYGKLKSG-PSLVNREGKLTSHLRGIFYNVLTFLQNDIIPIYVFDGKAPDIKSKT 119 Query: 389 LLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAP 568 + KR K K K+T + + + LL LMG+P + AP Sbjct: 120 IEKR------------------------KLRKDRFKLTSEDIKEVQILLDLMGIPYIIAP 155 Query: 569 CEAESQCAALCKSDK------VYAVASEDMDSLTFGAPRFVRHLMDPSSRKIPVMEFEVA 730 EA+ C+ LC V V +ED D L GAP + ++ ++ ++ ++ Sbjct: 156 GEADVICSWLCARHDSNGKRYVKGVCTEDSDMLPLGAPYMFKDMLGLNNLNKNIIIVKLK 215 Query: 731 KILEELEFTMDQFIDLCILCGCDYCDSIKGIGGLTALKLIRQHGSIEGILENINK 895 +L L TM++FIDLC+L GCDYCD+IKGIG A KLI ++ +++ +LE ++K Sbjct: 216 DVLGFLGLTMNEFIDLCVLLGCDYCDNIKGIGPKNAYKLIVEYRTLDKVLEFLHK 270
>Q9HQ27:FEN_HALSA Flap structure-specific endonuclease - Halobacterium salinarium| (Halobacterium halobium) Length = 327 Score = 136 bits (342), Expect = 3e-31 Identities = 100/325 (30%), Positives = 155/325 (47%), Gaps = 2/325 (0%) Frame = +2 Query: 146 SMREQKFESYFGRRIAVDASMSIYQFLIV-VGRTGMETLTNEAGDVTSHLQGMFSRTIRL 322 ++ E F G +AVDA +Y++L V TG + T G ++L G + Sbjct: 11 AIEETPFADLEGSVVAVDAHNWLYKYLTTTVQWTGADVYTTSDGTEVANLVGAVQGLPKF 70 Query: 323 LEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVT 502 E G+ PV+V+DG E+K DE+ R +R E+L A EAGD + RT ++T Sbjct: 71 FEHGLTPVFVWDGGVTELKDDEIADRREQRERYEEQLDDAREAGDAAEAARLDARTQRLT 130 Query: 503 KQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVA-SEDMDSLTFGAPRFVRH 679 ++ + L L+ +P VEAP E E+Q A + ++D A S+D D L G+P +R Sbjct: 131 PTIHETTRELFDLLDIPQVEAPAEGEAQAAYMTRTDDAVDYAGSDDYDCLLLGSPVTLRQ 190 Query: 680 LMDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIKGIGGLTALKLIRQH 859 L SS +M+F+ L E + T +Q +D+ ILCG D+ I G G TAL I +H Sbjct: 191 L--TSSGHPELMDFDAT--LAEHDLTWEQLVDVGILCGTDFNPGIDGFGPTTALDAIGEH 246 Query: 860 GSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVNFLVKEN 1039 G + +L + ++ D R +F P VT D +P + F+ E Sbjct: 247 GDLWDVL--AAEGEHVAHGD----RIRELFLNPDVTDDYVIDPDVSPAIDAARAFVTDEW 300 Query: 1040 GFSQDRVTKAIEKIKSAKNKSSQGR 1114 D V + E+I +A ++ R Sbjct: 301 EVDADAVARGFERIDAAAAQTGLDR 325
>Q09708:YAGG_SCHPO Uncharacterized protein C12G12.16c - Schizosaccharomyces pombe| (Fission yeast) Length = 496 Score = 97.1 bits (240), Expect = 2e-19 Identities = 57/182 (31%), Positives = 105/182 (57%), Gaps = 5/182 (2%) Frame = +2 Query: 425 EELTKAVEAGDTDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPC--EAESQCAAL 598 +EL KA++ T+ ++K +R + + Q+ + +L+++G+P +P EAE+ +A+ Sbjct: 250 DELQKAIKLKQTE-LDKLERRLYRPSPQNIFEIFEILKILGIPASFSPIGVEAEAFASAI 308 Query: 599 CKSDKVYAVASEDMDSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKILEELEFTMDQFIDL 778 +++ YAVA++D D L G+ L + +P+ + KI +EL T D F D Sbjct: 309 SQNNLAYAVATQDTDVLLLGSSMISNFLDLNDNFHLPLQIMDPRKIAQELNLTFDGFQDY 368 Query: 779 CILCGCDYCDSIKGIGGLTALKLIRQHGSIEGILENIN-KDKYQIPEDW--PYQEARRMF 949 C++CG D+ I IG + ALKLIR +G+ +L+ +N ++KY IP D+ + A+++F Sbjct: 369 CLMCGTDFTSRIPKIGPVRALKLIRYYGNAFDVLKALNVEEKYIIPTDYIKKFLTAKKLF 428 Query: 950 KE 955 + Sbjct: 429 TD 430
>Q803U7:EXO1_DANRE Exonuclease 1 - Danio rerio (Zebrafish) (Brachydanio rerio)| Length = 806 Score = 97.1 bits (240), Expect = 2e-19 Identities = 92/271 (33%), Positives = 135/271 (49%), Gaps = 5/271 (1%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MG++GL + + D A + M +K Y G+ +AVD Y +L + E L G+ Sbjct: 1 MGIQGLLQFIKD-ASEPMHVKK---YRGQTVAVDT----YCWLHKGAFSCAEKLAK--GE 50 Query: 278 VTSHLQGMFSRTI-RLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAV--E 448 T + + LL G+KP+ VFDG+ K E+ K +R +A + K + E Sbjct: 51 PTDQYVSYCMKFVDMLLSFGVKPILVFDGRNLP-SKQEVEKSRRERRQANLQKGKQLLRE 109 Query: 449 AGDTDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVA 628 T+A E F+ R+V +T D R R GV V AP EA++Q A L KSD AV Sbjct: 110 GKITEARECFT-RSVNITPSMAHDVIRAARTRGVDCVVAPYEADAQLAFLNKSDIAQAVI 168 Query: 629 SEDMDSLTFGAPRFVRHLMDPSSRKIPVMEFEV--AKILEELEFTMDQFIDLCILCGCDY 802 +ED D L FG + + MD + + + + K L + FT ++F +CIL GCDY Sbjct: 169 TEDSDLLAFGCKKVILK-MDKQGNGLEIEQCHLGRCKSLGNI-FTEEKFRYMCILSGCDY 226 Query: 803 CDSIKGIGGLTALKLIRQHGSIEGILENINK 895 S+ GIG A KL+R + + IL+ I K Sbjct: 227 LQSLYGIGLGKACKLLRMANNPD-ILKVIKK 256
>Q9W6K2:EXO1_XENLA Exonuclease 1 - Xenopus laevis (African clawed frog)| Length = 734 Score = 95.5 bits (236), Expect = 6e-19 Identities = 81/282 (28%), Positives = 132/282 (46%), Gaps = 7/282 (2%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MG++GL + L + A + + +K++ G+ +AVD +++ G + Sbjct: 1 MGIQGLLQFLKE-ASEPVHVKKYK---GKTVAVDTYCWLHK-----GAFACAEKLAKGEP 51 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGD 457 ++Q LL G+KP+ VFDG KKD R KR ++ + + G Sbjct: 52 TDQYVQFCMKLVHMLLSFGVKPILVFDGCTLPSKKDVEKARREKRQTNLQKGKQLLREGK 111 Query: 458 TDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASED 637 + R+V +T + + R GV + AP EA+SQ A L K+D A+ +ED Sbjct: 112 LAEARECFSRSVNITSSMAHEVIKAARSEGVDYIVAPYEADSQLAYLNKNDFAEAIITED 171 Query: 638 MDSLTFGAPRFVRHLMDP--SSRKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDS 811 D L FG + V MD + +I F + + L ++ FT ++F +CIL GCDY S Sbjct: 172 SDLLAFGCKK-VLLKMDKFGNGLEIDQARFGMCRSLGDV-FTEEKFRYMCILSGCDYLPS 229 Query: 812 IKGIGGLTALKLIR--QHGSIEGILENIN---KDKYQIPEDW 922 I GIG A KL++ + I +++ I K +PE + Sbjct: 230 IHGIGLAKACKLLKVANNPDITKVIQKIGQYLKTNITVPEGY 271
>P53695:EXO1_SCHPO Exodeoxyribonuclease 1 - Schizosaccharomyces pombe (Fission yeast)| Length = 571 Score = 91.3 bits (225), Expect = 1e-17 Identities = 97/375 (25%), Positives = 166/375 (44%), Gaps = 14/375 (3%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MG+KGL LL + E + G+ + VD + +++ + E N+ D Sbjct: 1 MGIKGLLGLLKP----MQKSSHVEEFSGKTLGVDGYVWLHKAVFTCAH---ELAFNKETD 53 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAG- 454 +L+ + + L G+KP+ VFDG P K KR +R EA E K + G Sbjct: 54 --KYLKYAIHQALMLQYYGVKPLIVFDGGPLPCKASTEQKRKERRQEAFELGKKLWDEGK 111 Query: 455 DTDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASE 634 + AI +FS R V VT + LR G+ + AP EA++Q L K + + + +E Sbjct: 112 KSQAIMQFS-RCVDVTPEMAWKLIIALREHGIESIVAPYEADAQLVYLEKENIIDGIITE 170 Query: 635 DMDSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKILE-ELEFTMDQFIDLCILCGCDYCDS 811 D D L FGA + V MD I + ++A + L +++ + I GCDY D Sbjct: 171 DSDMLVFGA-QTVLFKMDGFGNCITIRRNDIANAQDLNLRLPIEKLRHMAIFSGCDYTDG 229 Query: 812 IKGIGGLTALKLIRQHGSIEGILENINKDK-YQIPEDWPYQEA--------RRMF---KE 955 + G+G TAL+ ++++ + + DK ++P + + A +R++ + Sbjct: 230 VAGMGLKTALRYLQKYPEPRAAIRAMRLDKSLKVPVSFEKEFALADLAFRHQRVYCPKDK 289 Query: 956 PSVTLDIPELKWTAPDEEGLVNFLVKENGFSQDRVTKAIEKIKSAKNKSSQGRLESFFKP 1135 V L PE + + ++ + +F +N + D I ++SF K Sbjct: 290 TLVHLSPPERELSVHEDAFIGSFF--DNQLAIDIAEGRSNPITKCAFDIKDSSMQSFTKT 347 Query: 1136 TVSTSVPLKRKETSE 1180 T++ S KRK S+ Sbjct: 348 TITIS---KRKGISK 359
>Q9QZ11:EXO1_MOUSE Exonuclease 1 - Mus musculus (Mouse)| Length = 837 Score = 89.4 bits (220), Expect = 4e-17 Identities = 77/283 (27%), Positives = 130/283 (45%), Gaps = 8/283 (2%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MG++GL + + + + + Y G+ +AVD +++ I E L G+ Sbjct: 1 MGIQGLLQFIQE----ASEPVNVKKYKGQAVAVDTYCWLHKGAIACA----EKLAK--GE 50 Query: 278 VTSHLQGMFSRTIR-LLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAG 454 T G + + LL G+KP+ +FDG KK+ R +R + + + G Sbjct: 51 PTDRYVGFCMKFVNMLLSYGVKPILIFDGCTLPSKKEVERSRRERRQSNLLKGKQLLREG 110 Query: 455 DTDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASE 634 R++ +T + R +GV + AP EA++Q A L K+ V AV +E Sbjct: 111 KVSEARDCFARSINITHAMAHKVIKAARALGVDCLVAPYEADAQLAYLNKAGIVQAVITE 170 Query: 635 DMDSLTFGAPRFVRHLMDPSSRKIPV--MEFEVAKILEELEFTMDQFIDLCILCGCDYCD 808 D D L FG + + MD + V + K L ++ FT ++F +CIL GCDY Sbjct: 171 DSDLLAFGCKKVILK-MDQFGNGLEVDQARLGMCKQLGDV-FTEEKFRYMCILSGCDYLA 228 Query: 809 SIKGIGGLTALKLIR--QHGSIEGILENIN---KDKYQIPEDW 922 S++GIG A K++R + I +++ I + +PED+ Sbjct: 229 SLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNITVPEDY 271
>Q9UQ84:EXO1_HUMAN Exonuclease 1 - Homo sapiens (Human)| Length = 846 Score = 89.4 bits (220), Expect = 4e-17 Identities = 77/282 (27%), Positives = 133/282 (47%), Gaps = 7/282 (2%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MG++GL + + + A + + +K++ G+ +AVD +++ I E L G+ Sbjct: 1 MGIQGLLQFIKE-ASEPIHVRKYK---GQVVAVDTYCWLHKGAIACA----EKLAK--GE 50 Query: 278 VTSHLQGMFSRTIR-LLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAG 454 T G + + LL GIKP+ VFDG KK+ R +R + + + G Sbjct: 51 PTDRYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREG 110 Query: 455 DTDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASE 634 + R++ +T + R GV + AP EA++Q A L K+ V A+ +E Sbjct: 111 KVSEARECFTRSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITE 170 Query: 635 DMDSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKILEELE-FTMDQFIDLCILCGCDYCDS 811 D D L FG + + MD + + + + + + FT ++F +CIL GCDY S Sbjct: 171 DSDLLAFGCKKVILK-MDQFGNGLEIDQARLGMCRQLGDVFTEEKFRYMCILSGCDYLSS 229 Query: 812 IKGIGGLTALKLIR--QHGSIEGILENIN---KDKYQIPEDW 922 ++GIG A K++R + I +++ I K +PED+ Sbjct: 230 LRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDY 271
>Q24558:EXO1_DROME Exonuclease 1 - Drosophila melanogaster (Fruit fly)| Length = 732 Score = 85.9 bits (211), Expect = 5e-16 Identities = 69/252 (27%), Positives = 107/252 (42%), Gaps = 1/252 (0%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MG+ GL + K+ + + G +AVD +++ G G D Sbjct: 1 MGITGLIPFVG----KASSQLHLKDIRGSTVAVDTYCWLHK-----GVFGCAEKLARGED 51 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGD 457 ++Q LL IKP+ VFDG+ K +R R ++ E + + G Sbjct: 52 TDVYIQYCLKYVNMLLSYDIKPILVFDGQHLPAKALTEKRRRDSRKQSKERAAELLRLGR 111 Query: 458 TDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASED 637 + +R V VT R R V + AP EA++Q A L ++D + +ED Sbjct: 112 IEEARSHMRRCVDVTHDMALRLIRECRSRNVDCIVAPYEADAQMAWLNRADVAQYIITED 171 Query: 638 MDSLTFGAPRFVRHL-MDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSI 814 D FGA + L ++ S + + +A E ++ D+F +CIL GCDY DS+ Sbjct: 172 SDLTLFGAKNIIFKLDLNGSGLLVEAEKLHLAMGCTEEKYHFDKFRRMCILSGCDYLDSL 231 Query: 815 KGIGGLTALKLI 850 GIG A K I Sbjct: 232 PGIGLAKACKFI 243
>P39875:EXO1_YEAST Exodeoxyribonuclease 1 - Saccharomyces cerevisiae (Baker's yeast)| Length = 702 Score = 85.1 bits (209), Expect = 8e-16 Identities = 75/280 (26%), Positives = 124/280 (44%), Gaps = 5/280 (1%) Frame = +2 Query: 98 MGVKGLTKLLAD-NAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAG 274 MG++GL L P S+R Y G +A+D +++ E + Sbjct: 1 MGIQGLLPQLKPIQNPVSLRR-----YEGEVLAIDGYAWLHR---AACSCAYELAMGKPT 52 Query: 275 DVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAG 454 D +LQ R L ++P VFDG +KK KR KR E + G Sbjct: 53 D--KYLQFFIKRFSLLKTFKVEPYLVFDGDAIPVKKSTESKRRDKRKENKAIAERLWACG 110 Query: 455 DTDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASE 634 + + ++ V +T + +L G+ + AP EA+SQ L + + V + SE Sbjct: 111 EKKNAMDYFQKCVDITPEMAKCIICYCKLNGIRYIVAPFEADSQMVYLEQKNIVQGIISE 170 Query: 635 DMDSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKILEEL---EFTMDQFIDLCILCGCDYC 805 D D L FG R + L D + + K+ ++ T ++ I + L GCDY Sbjct: 171 DSDLLVFGCRRLITKLND-YGECLEICRDNFIKLPKKFPLGSLTNEEIITMVCLSGCDYT 229 Query: 806 DSIKGIGGLTALKLIRQHGSIEGILENINKD-KYQIPEDW 922 + I +G +TA+KL+R+ +IE I+ +I ++ K IP+ + Sbjct: 230 NGIPKVGLITAMKLVRRFNTIERIILSIQREGKLMIPDTY 269
>Q12086:DIN7_YEAST DNA damage-inducible protein DIN7 - Saccharomyces cerevisiae| (Baker's yeast) Length = 430 Score = 83.2 bits (204), Expect = 3e-15 Identities = 67/269 (24%), Positives = 118/269 (43%), Gaps = 3/269 (1%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MG+ GL L + ++ + Y + +A+D +++ E + N+ Sbjct: 1 MGIPGLLPQLK----RIQKQVSLKKYMYQTLAIDGYAWLHRASCACA---FELVMNKP-- 51 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGD 457 +LQ R L IKP VFDG +K +R KR E K AG+ Sbjct: 52 TNKYLQFFIKRLQLLKRLKIKPYIVFDGDSLFVKNHTETRRRKKRLENEMIAKKLWSAGN 111 Query: 458 TDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASED 637 ++ +++V +T + +L +P + AP EA+ Q L K + + SED Sbjct: 112 RYNAMEYFQKSVDITPEMAKCIIDYCKLHSIPYIVAPFEADPQMVYLEKMGLIQGIISED 171 Query: 638 MDSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKILEEL---EFTMDQFIDLCILCGCDYCD 808 D L FG + L D + + + + + + + E E + QF +L L GCDY Sbjct: 172 SDLLVFGCKTLITKLND-QGKALEISKDDFSALPENFPLGELSEQQFRNLVCLAGCDYTS 230 Query: 809 SIKGIGGLTALKLIRQHGSIEGILENINK 895 I +G +TA+K+++++ ++ IL I + Sbjct: 231 GIWKVGVVTAMKIVKRYSEMKDILIQIER 259
>P07276:RAD2_YEAST DNA-repair protein RAD2 - Saccharomyces cerevisiae (Baker's yeast)| Length = 1031 Score = 82.4 bits (202), Expect = 5e-15 Identities = 65/278 (23%), Positives = 118/278 (42%), Gaps = 28/278 (10%) Frame = +2 Query: 380 KDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVV 559 K+ L A+RN A VE + K + + +VT + + LL G+P + Sbjct: 731 KNTTLSTSAERNVAENAF---VEDELFEQQMKDKRDSDEVTMDMIKEVQELLSRFGIPYI 787 Query: 560 EAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKIL 739 AP EAE+QCA L + + V + ++D D FG + +++ K V ++ IL Sbjct: 788 TAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF---HEKNYVEFYDAESIL 844 Query: 740 EELEFTMDQFIDLCILCGCDYCDSIKGIGGLTALKLIRQHGSIEGILENINKDKYQ---- 907 + L I+L L G DY + +KG+G ++++++I + G+++ + N ++ Sbjct: 845 KLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKNFKDWYNNGQFDKRKQ 904 Query: 908 --------------------IPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVNFL 1027 + +D+P + P V D W PD + L +F+ Sbjct: 905 ETENKFEKDLRKKLVNNEIILDDDFPSVMVYDAYMRPEVDHDTTPFVWGVPDLDMLRSFM 964 Query: 1028 VKENGF----SQDRVTKAIEKIKSAKNKSSQGRLESFF 1129 + G+ S + + I + K K Q R+ FF Sbjct: 965 KTQLGWPHEKSDEILIPLIRDVNKRKKKGKQKRINEFF 1002 Score = 62.4 bits (150), Expect = 5e-09 Identities = 38/99 (38%), Positives = 54/99 (54%) Frame = +2 Query: 131 DNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSR 310 D A + R + ES +R+AVDAS+ IYQFL V + N SH+ G F R Sbjct: 8 DIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKN------SHITGFFRR 61 Query: 311 TIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATE 427 +LL GI+PV+VFDG P +K++ + +R +R E Sbjct: 62 ICKLLYFGIRPVFVFDGGVPVLKRETIRQRKERRQGKRE 100
>P28706:RAD13_SCHPO DNA-repair protein rad13 - Schizosaccharomyces pombe (Fission yeast)| Length = 1112 Score = 77.0 bits (188), Expect = 2e-13 Identities = 72/293 (24%), Positives = 126/293 (43%), Gaps = 39/293 (13%) Frame = +2 Query: 371 EMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVK-----VTKQHNDDCKRLL 535 E + D + +R+E E +A E + K KR+ K VT+ +C+ LL Sbjct: 707 EKEYDRFVSELNQRHETEEWNQEAFEKRLKEL--KNQKRSEKRDADEVTQVMIKECQELL 764 Query: 536 RLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDPSSRKIPVM 715 RL G+P + AP EAE+QC+ L + V + ++D D FG R R++ + + Sbjct: 765 RLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSDVFLFGGTRVYRNMFNQN------- 817 Query: 716 EFEVAKILEEL--EFTMDQ--FIDLCILCGCDYCDSIKGIGGLTALKLIRQHGSIEGILE 883 +F +++++ EF ++Q I L L G DY + +G + AL+++ + G+ E Sbjct: 818 KFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTMGLSRVGPVLALEILHEFPGDTGLFE 877 Query: 884 ------------------------NINK--DKYQIPEDWPYQEARRMFKEPSVTLDIPEL 985 INK K +P ++P + P+V Sbjct: 878 FKKWFQRLSTGHASKNDVNTPVKKRINKLVGKIILPSEFPNPLVDEAYLHPAVDDSKQSF 937 Query: 986 KWTAPDEEGLVNFLVKENGFSQDRVTKAIEKIKSAKNK----SSQGRLESFFK 1132 +W PD + L FL+ G+S+ R + + + +K +Q L FF+ Sbjct: 938 QWGIPDLDELRQFLMATVGWSKQRTNEVLLPVIQDMHKKQFVGTQSNLTQFFE 990 Score = 70.1 bits (170), Expect = 3e-11 Identities = 45/113 (39%), Positives = 60/113 (53%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MGV GL +L R K E+ +R+A+DAS+ IYQFL V L + Sbjct: 1 MGVSGLWDILEP----VKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKS---- 52 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELT 436 SH+ G F R +LL GIKPV+VFDG P +K+ + KR A+R + E T Sbjct: 53 --SHVVGFFRRICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQARRLDREENAT 103
>P28715:ERCC5_HUMAN DNA-repair protein complementing XP-G cells - Homo sapiens (Human)| Length = 1186 Score = 75.9 bits (185), Expect = 5e-13 Identities = 70/292 (23%), Positives = 129/292 (44%), Gaps = 33/292 (11%) Frame = +2 Query: 356 DGKPPEMKKDELLKRHAKRNEATEELTKA-----VEAGDTDAIEKFSKR-TVKVTKQHND 517 DG+P E +KD H ++ EEL + A ++ +R VT Q Sbjct: 711 DGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQERIAATVTGQMFL 770 Query: 518 DCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDPSS 697 + + LLRL G+P ++AP EAE+QCA L +D+ ++D D FGA R+ + + Sbjct: 771 ESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNKNK 830 Query: 698 RKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIKGIGGLTALKLIRQ---HGSI 868 V ++ +L ++ I+L L G DY + I +G +TA++++ + HG + Sbjct: 831 F---VEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHG-L 886 Query: 869 EGILE----------------NINKDK-------YQIPEDWPYQEARRMFKEPSVTLDIP 979 E +L+ N + K Q+ +P + +P V Sbjct: 887 EPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSKG 946 Query: 980 ELKWTAPDEEGLVNFLVKENGFSQDRVTKAI-EKIKSAKNKSSQGRLESFFK 1132 W PD + + F + G+++ + +++ +K + +Q R++SFF+ Sbjct: 947 SFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQQTQLRIDSFFR 998 Score = 56.2 bits (134), Expect = 4e-07 Identities = 40/117 (34%), Positives = 62/117 (52%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MGV+GL KLL + R+ E+ G+ +AVD S+ + Q L V ++ N Sbjct: 1 MGVQGLWKLLECSG----RQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENP--- 53 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVE 448 HL +F R +LL I+P++VFDG P +KK L+KR +++ A+ + K E Sbjct: 54 ---HLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTE 107
>Q9ATY5:UVH3_ARATH DNA-repair protein UVH3 - Arabidopsis thaliana (Mouse-ear cress)| Length = 1479 Score = 74.7 bits (182), Expect = 1e-12 Identities = 42/139 (30%), Positives = 76/139 (54%) Frame = +2 Query: 461 DAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDM 640 D K + V+ + +C+ LL++ G+P + AP EAE+QCA + +S+ V + ++D Sbjct: 909 DEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDS 968 Query: 641 DSLTFGAPRFVRHLMDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIKG 820 D FGA +++ D RK V + + I +EL + D+ I + +L G DY + I G Sbjct: 969 DVFLFGARSVYKNIFD--DRKY-VETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISG 1025 Query: 821 IGGLTALKLIRQHGSIEGI 877 IG + A++++ +G+ Sbjct: 1026 IGIVNAIEVVTAFPEEDGL 1044 Score = 67.4 bits (163), Expect = 2e-10 Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 10/191 (5%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MGV+GL +LLA R E+ +R+A+DAS+ + QF+ + + +E GD Sbjct: 1 MGVQGLWELLAPVG----RRVSVETLANKRLAIDASIWMVQFI--------KAMRDEKGD 48 Query: 278 VT--SHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVEA 451 + +HL G F R +LL KP++VFDG P +K+ ++ R +R A ++ K E Sbjct: 49 MVQNAHLIGFFRRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRKTAEK 108 Query: 452 GDTDAIE----KFSKRTVKVTKQHNDDCKRLLRLMGVPVVE----APCEAESQCAALCKS 607 + ++ K + +K + DD R+ + + VE P E + A+ + Sbjct: 109 LLLNRLKDIRLKEQAKDIKNQRLKQDDSDRVKKRVSSDSVEDNLRVPVEEDDVGASFFQE 168 Query: 608 DKVYAVASEDM 640 +K+ V+ + Sbjct: 169 EKLDEVSQASL 179
>P35689:ERCC5_MOUSE DNA-repair protein complementing XP-G cells homolog - Mus musculus| (Mouse) Length = 1170 Score = 72.8 bits (177), Expect = 4e-12 Identities = 85/379 (22%), Positives = 155/379 (40%), Gaps = 46/379 (12%) Frame = +2 Query: 134 NAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRT 313 +APK M + ES + S S F+ V L E+ + ++HL + Sbjct: 633 SAPKPMGPMEMES--------EESESDGSFIEVQSVVSNSELQTESSEASTHLSEKDAEE 684 Query: 314 IR-LLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKA---VEAGDTDAIEK-- 475 R +LE G + + E ++ H + + E++ + + DA+E Sbjct: 685 PREILEEGTSRDT--ECLLQDSSDIEAMEGHREADIDAEDMPNEWQDINLEELDALESNL 742 Query: 476 -FSKRTVKVTKQHND------------DCKRLLRLMGVPVVEAPCEAESQCAALCKSDKV 616 + ++K KQ D + + LLRL GVP ++AP EAE+QCA L SD+ Sbjct: 743 LAEQNSLKAQKQQQDRIAASVTGQMFLESQELLRLFGVPYIQAPMEAEAQCAMLDLSDQT 802 Query: 617 YAVASEDMDSLTFGAPRFVRHLMDPSSRKIPVME-FEVAKILEELEFTMDQFIDLCILCG 793 ++D D FGA RH+ K +E ++ +L ++ I+L L G Sbjct: 803 SGTITDDSDIWLFGA----RHVYKNFFNKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLG 858 Query: 794 CDYCDSIKGIGGLTALKLIRQH------------------GSIEGILEN-----INKD-- 898 DY + I +G +TA++++ + + + + EN + K Sbjct: 859 SDYTEGIPTVGCVTAMEILNEFPGRGLDPLLKFSEWWHEAQNNKKVAENPYDTKVKKKLR 918 Query: 899 KYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVNFLVKENGFSQDRVTKAIEK 1078 K Q+ +P + P V W PD + + F + G+++ + +++ Sbjct: 919 KLQLTPGFPNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYP 978 Query: 1079 I-KSAKNKSSQGRLESFFK 1132 + K +Q R++SFF+ Sbjct: 979 VLKHLNAHQTQLRIDSFFR 997 Score = 54.3 bits (129), Expect = 1e-06 Identities = 39/117 (33%), Positives = 61/117 (52%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MGV+GL KLL + + E + G+ +AVD S+ + Q L V + + N Sbjct: 1 MGVQGLWKLLECSGHRVSPE----ALEGKVLAVDISIWLNQALKGVRDSHGNVIEN---- 52 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVE 448 +HL +F R +LL I+P++VFDG P +KK L KR +++ A+ + K E Sbjct: 53 --AHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSASIDSRKTTE 107
>P14629:ERCC5_XENLA DNA-repair protein complementing XP-G cells homolog - Xenopus laevis| (African clawed frog) Length = 1196 Score = 69.3 bits (168), Expect = 4e-11 Identities = 57/238 (23%), Positives = 104/238 (43%), Gaps = 26/238 (10%) Frame = +2 Query: 497 VTKQHNDDCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVR 676 VT Q + + LL+L G+P + AP EAE+QCA L +D+ ++D D FGA + Sbjct: 797 VTGQMCLESQELLQLFGIPYIVAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYK 856 Query: 677 HLMDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIKGIGGLTALKLIRQ 856 + S+ V ++ A I +L + I+L L G DY + I +G ++A++++ + Sbjct: 857 NFF---SQNKHVEYYQYADIHNQLGLDRSKLINLAYLLGSDYTEGIPTVGYVSAMEILNE 913 Query: 857 H--GSIEGILE------NINKDKYQIP-----------------EDWPYQEARRMFKEPS 961 +E +++ KDK P + +P + +P Sbjct: 914 FPGQGLEPLVKFKEWWSEAQKDKKMRPNPNDTKVKKKLRLLDLQQSFPNPAVASAYLKPV 973 Query: 962 VTLDIPELKWTAPDEEGLVNFLVKENGFSQDRVTKA-IEKIKSAKNKSSQGRLESFFK 1132 V W PD E + F G+ + + + + +K + +Q R++SFF+ Sbjct: 974 VDESKSAFSWGRPDLEQIREFCESRFGWYRLKTDEVLLPVLKQLNAQQTQLRIDSFFR 1031 Score = 48.5 bits (114), Expect = 8e-05 Identities = 36/117 (30%), Positives = 61/117 (52%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 MGV+GL KLL + + + + E G+ +AVD S+ + Q + + N Sbjct: 1 MGVQGLWKLL-ECSGRPINPGTLE---GKILAVDISIWLNQAVKGARDRQGNAIQN---- 52 Query: 278 VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATEELTKAVE 448 +HL +F R +LL I+P++VFDG+ P +K+ L KR + ++A+ + K E Sbjct: 53 --AHLLTLFHRLCKLLFFRIRPIFVFDGEAPLLKRQTLAKRRQRTDKASNDARKTNE 107
>P80194:DPO1_THECA DNA polymerase I, thermostable - Thermus caldophilus| Length = 834 Score = 57.0 bits (136), Expect = 2e-07 Identities = 82/307 (26%), Positives = 128/307 (41%), Gaps = 24/307 (7%) Frame = +2 Query: 179 GRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLL-EAGIKPVYV- 352 GR + VD Y+ ++ LT G+ + G ++ L E G K V+V Sbjct: 12 GRVLLVDGHHLAYRTFFA-----LKGLTTSRGEPVQAVYGFAKSLLKALKEDGYKAVFVV 66 Query: 353 FDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQHNDDCKRL 532 FD K P R+EA E A +AG E F ++ + K L Sbjct: 67 FDAKAPSF-----------RHEAYE----AYKAGRAPTPEDFPRQLALI--------KEL 103 Query: 533 LRLMGVPVVEAP-CEAESQCAALCKSDKV--YAV----ASEDMDSLTFGAPRFVR---HL 682 + L+G +E P EA+ A L K+ + Y V A D+D L + HL Sbjct: 104 VDLLGFTRLEVPGYEADDVLATLAKNPEKEGYEVRILTADRDLDQLVSDRVAVLHPEGHL 163 Query: 683 MDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCG--CDYCDSIKGIGGLTALKLIRQ 856 + P + ++ +Q++D L G D +KGIG TALKL+++ Sbjct: 164 ITPEW------------LWQKYGLKPEQWVDFRALVGDPSDNLPGVKGIGEKTALKLLKE 211 Query: 857 HGSIEGILENINKDKYQIPED-----WPYQEARRMFKEPS-----VTLDIPELKWTAPDE 1006 GS+E +L+N+++ K PE+ + E R+ E S + L++ + PD Sbjct: 212 WGSLENLLKNLDRVK---PENVREKIKAHLEDLRLSLELSRVRTDLPLEVDLAQGREPDR 268 Query: 1007 EGLVNFL 1027 EGL FL Sbjct: 269 EGLRAFL 275
>P52028:DPO1T_THET8 DNA polymerase I, thermostable - Thermus thermophilus (strain HB8 /| ATCC 27634 / DSM 579) Length = 834 Score = 55.8 bits (133), Expect = 5e-07 Identities = 82/303 (27%), Positives = 128/303 (42%), Gaps = 20/303 (6%) Frame = +2 Query: 179 GRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLL-EAGIKPVYV- 352 GR + VD Y+ ++ LT G+ + G ++ L E G K V+V Sbjct: 12 GRVLLVDGHHLAYRTFFA-----LKGLTTSRGEPVQAVYGFAKSLLKALKEDGYKAVFVV 66 Query: 353 FDGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQHNDDCKRL 532 FD K P R+EA E A +AG E F ++ + K L Sbjct: 67 FDAKAPSF-----------RHEAYE----AYKAGRAPTPEDFPRQLALI--------KEL 103 Query: 533 LRLMGVPVVEAP-CEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDPSSRKIP 709 + L+G +E P EA+ A L K + E + A R + L+ S ++ Sbjct: 104 VDLLGFTRLEVPGYEADDVLATLAKKAE-----KEGYEVRILTADRDLYQLV---SDRVA 155 Query: 710 VMEFEVAKIL-----EELEFTMDQFIDLCILCG--CDYCDSIKGIGGLTALKLIRQHGSI 868 V+ E I E+ +Q++D L G D +KGIG TALKL+++ GS+ Sbjct: 156 VLHPEGHLITPEWLWEKYGLRPEQWVDFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSL 215 Query: 869 EGILENINKDKYQIPED-----WPYQEARRMFKEPS-----VTLDIPELKWTAPDEEGLV 1018 E +L+N+++ K PE+ + E R+ E S + L++ + PD EGL Sbjct: 216 ENLLKNLDRVK---PENVREKIKAHLEDLRLSLELSRVRTDLPLEVDLAQGREPDREGLR 272 Query: 1019 NFL 1027 FL Sbjct: 273 AFL 275
>P59199:DPO1_STRPN DNA polymerase I - Streptococcus pneumoniae| Length = 877 Score = 55.1 bits (131), Expect = 9e-07 Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 15/153 (9%) Frame = +2 Query: 710 VMEFEVAK---ILEELEFTMDQFIDLCILCGCDYCDSIKGI---GGLTALKLIRQHGSIE 871 V EFE ++EE+ T QFIDL L G D D+I G+ G T +KL+ +HGS+E Sbjct: 159 VAEFEAFTPDYLMEEMGLTPAQFIDLKALMG-DKSDNIPGVTKVGEKTGIKLLLEHGSLE 217 Query: 872 GILENINKDK-YQIPEDWPYQEARRMFKEPSVTLD--------IPELKWTAPDEEGLVNF 1024 GI ENI+ K ++ E+ + + + T+D + +L ++ PD E L F Sbjct: 218 GIYENIDGMKTSKMKENLINDKEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKF 277 Query: 1025 LVKENGFSQDRVTKAIEKIKSAKNKSSQGRLES 1123 E GF Q +K A N SS ES Sbjct: 278 -YDEMGFKQ---------LKQALNVSSADVSES 300
>P59200:DPO1_STRR6 DNA polymerase I - Streptococcus pneumoniae (strain ATCC BAA-255 /| R6) Length = 877 Score = 54.7 bits (130), Expect = 1e-06 Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 15/147 (10%) Frame = +2 Query: 710 VMEFEVAK---ILEELEFTMDQFIDLCILCGCDYCDSIKGI---GGLTALKLIRQHGSIE 871 V EFE ++EE+ T QFIDL L G D D+I G+ G T +KL+ +HGS+E Sbjct: 159 VAEFEAFTPDYLMEEMGLTPAQFIDLKALMG-DKSDNIPGVTKVGEKTGIKLLLEHGSLE 217 Query: 872 GILENINKDK-YQIPEDWPYQEARRMFKEPSVTLD--------IPELKWTAPDEEGLVNF 1024 GI ENI+ K ++ E+ + + + T+D + +L ++ PD E L F Sbjct: 218 GIYENIDGMKTSKMKENLINDKEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKF 277 Query: 1025 LVKENGFSQDRVTKAIEKIKSAKNKSS 1105 E GF Q +K A N SS Sbjct: 278 -YDEMGFKQ---------LKQALNMSS 294
>O52225:DPO1_THEFI DNA polymerase I, thermostable - Thermus filiformis| Length = 833 Score = 53.5 bits (127), Expect = 2e-06 Identities = 74/275 (26%), Positives = 121/275 (44%), Gaps = 17/275 (6%) Frame = +2 Query: 254 TLTNEAGDVTSHLQGMFSRTI--RLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNEATE 427 +LT G+ + G F+R++ L E G V VFD K P R+EA E Sbjct: 31 SLTTSRGEPVQMVYG-FARSLLKALKEDGQAVVVVFDAKAPSF-----------RHEAYE 78 Query: 428 ELTKAVEAGDTDAIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAP-CEAESQCAALCK 604 A +AG E F ++ V KRL+ L+G+ +EAP EA+ L K Sbjct: 79 ----AYKAGRAPTPEDFPRQLALV--------KRLVDLLGLVRLEAPGYEADDVLGTLAK 126 Query: 605 SDKVYAVASEDMD-SLTFGAPRFVRHLMDPSSRKIPVMEFEVAK-ILEELEFTMDQFIDL 778 + E M+ + G F + L + S +P K + E+ ++++D Sbjct: 127 KAE-----REGMEVRILTGDRDFFQLLSEKVSVLLPDGTLVTPKDVQEKYGVPPERWVDF 181 Query: 779 CILCGCDYCDSIKGIGGL---TALKLIRQHGSIEGILENINKDK---------YQIPEDW 922 L G D D+I G+ G+ TAL+L+ + GS+E +L+N+++ K + + Sbjct: 182 RALTG-DRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSLRRKIEAHLEDLH 240 Query: 923 PYQEARRMFKEPSVTLDIPELKWTAPDEEGLVNFL 1027 + R+ + + +D L+ PD EGL FL Sbjct: 241 LSLDLARIRTDLPLEVDFKALRRRTPDLEGLRAFL 275
>P19821:DPO1_THEAQ DNA polymerase I, thermostable - Thermus aquaticus| Length = 832 Score = 50.8 bits (120), Expect = 2e-05 Identities = 73/302 (24%), Positives = 115/302 (38%), Gaps = 19/302 (6%) Frame = +2 Query: 179 GRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLL-EAGIKPVYVF 355 GR + VD Y+ ++ LT G+ + G ++ L E G + VF Sbjct: 12 GRVLLVDGHHLAYRTF-----HALKGLTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVF 66 Query: 356 DGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQHNDDCKRLL 535 D K P + E +AG E F ++ + K L+ Sbjct: 67 DAKAPSFR---------------HEAYGGYKAGRAPTPEDFPRQLALI--------KELV 103 Query: 536 RLMGVPVVEAP-CEAESQCAALCKSDKVYA----VASEDMDSLTFGAPRFVRHLMDPSSR 700 L+G+ +E P EA+ A+L K + + + D D + R H++ P Sbjct: 104 DLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRI--HVLHPEGY 161 Query: 701 KIPVMEFEVAKILEELEFTMDQFIDLCILCG--CDYCDSIKGIGGLTALKLIRQHGSIEG 874 I A + E+ DQ+ D L G D +KGIG TA KL+ + GS+E Sbjct: 162 LITP-----AWLWEKYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEA 216 Query: 875 ILENINKDKYQIPE-----------DWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVN 1021 +L+N+++ K I E W + R + L++ K PD E L Sbjct: 217 LLKNLDRLKPAIREKILAHMDDLKLSWDLAKVR-----TDLPLEVDFAKRREPDRERLRA 271 Query: 1022 FL 1027 FL Sbjct: 272 FL 273
>P30313:DPO1F_THETH DNA polymerase I, thermostable - Thermus thermophilus| Length = 831 Score = 50.8 bits (120), Expect = 2e-05 Identities = 66/255 (25%), Positives = 107/255 (41%), Gaps = 9/255 (3%) Frame = +2 Query: 179 GRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLL-EAGIKPVYVF 355 GR + VD Y+ ++ LT G+ + G ++ L E G V VF Sbjct: 11 GRVLLVDGHHLAYRTFFA-----LKGLTTSRGEPVQAVYGFAKSLLKALKEDGDVVVVVF 65 Query: 356 DGKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQHNDDCKRLL 535 D K P R+EA E A +AG E F ++ + K L+ Sbjct: 66 DAKAPSF-----------RHEAYE----AYKAGRAPTPEDFPRQLALI--------KELV 102 Query: 536 RLMGVPVVEAP-CEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDPSSRKIPV 712 L+G+ +E P EA+ A L K + E + A R + L+ S +I + Sbjct: 103 DLLGLVRLEVPGFEADDVLATLAKRAE-----KEGYEVRILTADRDLYQLL---SERIAI 154 Query: 713 MEFE-----VAKILEELEFTMDQFIDLCILCG--CDYCDSIKGIGGLTALKLIRQHGSIE 871 + E A + E+ +Q++D L G D +KGIG TA +LIR+ GS+E Sbjct: 155 LHPEGYLITPAWLYEKYGLRPEQWVDYRALAGDPSDNIPGVKGIGEKTAQRLIREWGSLE 214 Query: 872 GILENINKDKYQIPE 916 + +++++ K + E Sbjct: 215 NLFQHLDQVKPSLRE 229
>Q55971:DPO1_SYNY3 DNA polymerase I - Synechocystis sp. (strain PCC 6803)| Length = 986 Score = 47.0 bits (110), Expect = 2e-04 Identities = 65/306 (21%), Positives = 121/306 (39%), Gaps = 7/306 (2%) Frame = +2 Query: 188 IAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEAGIKPVYV---FD 358 + VD ++ G + L AG TS G + ++++E+ KP + FD Sbjct: 11 LLVDGHSLAFRAYYAFGLSKKGPLRTTAGIPTSVCFGFLNSLMQVMESQ-KPAAIAIAFD 69 Query: 359 GKPPEMKKDELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQHNDDCKRLLR 538 + P + + + R E E+ + + +E + +T+ DD L Sbjct: 70 RREPTFRHEADGAYKSNRQETPEDFAEDLSYLQ-QLLEALNLQTITYAGYEADDILGTLA 128 Query: 539 LMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDPSSRKIPVME 718 G +A Q L ++ + S + + R +P S E Sbjct: 129 CQG-------SDAGYQVKILSGDRDLFQLVSPEKNISVLYLTR------NPFSSNTGYDE 175 Query: 719 FEVAKILEELEFTMDQFIDLCILCG--CDYCDSIKGIGGLTALKLIRQHGSIEGILENIN 892 + +++++ T Q +D LCG D I GIG TA+KL+ ++ ++E + EN+ Sbjct: 176 LDWQGVVDKMGVTPAQIVDFKALCGDKSDCIPGINGIGEKTAIKLLAEYETLEKVYENLA 235 Query: 893 KDKYQIPE--DWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVNFLVKENGFSQDRVTK 1066 + K + D +A + +D+P L T D ++ GFS DR+ Sbjct: 236 QIKGALKTRLDNGKDDAMHSQMLARIVVDVP-LPVTWED--------LQLTGFSTDRLVP 286 Query: 1067 AIEKIK 1084 +EK++ Sbjct: 287 LLEKLE 292
>O32801:DPO1_LACLM DNA polymerase I - Lactococcus lactis subsp. cremoris (strain MG1363)| Length = 877 Score = 47.0 bits (110), Expect = 2e-04 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 11/187 (5%) Frame = +2 Query: 524 KRLLRLMGVPVVE-APCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDPSSR 700 K ++ +G+ E A EA+ L DK+ + D + + L+D ++R Sbjct: 98 KEMIEKLGIRHYELANYEADDIIGTL---DKMAEAPDVNFDVTIVTGDKDMIQLVDGNTR 154 Query: 701 ----KIPVMEFEVAK---ILEELEFTMDQFIDLCILCGCDYCDSIKGI---GGLTALKLI 850 K V EFE +LE++ T QFIDL L G D D+ G+ G T LKL+ Sbjct: 155 VEISKKGVAEFEEFTPDYLLEKMGLTPSQFIDLKALMG-DSSDNYPGVTKVGEKTGLKLL 213 Query: 851 RQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVNFLV 1030 ++ GS+E + EN+ K +D + F ++ + + AP E GL + L+ Sbjct: 214 QEFGSLENLYENVETLKASKMKDNLIADKEMAF----LSQQLATINTKAPLEIGLEDTLL 269 Query: 1031 KENGFSQ 1051 KE ++ Sbjct: 270 KEKNVAE 276
>O67550:EX53_AQUAE Probable 5'-3' exonuclease - Aquifex aeolicus| Length = 289 Score = 46.6 bits (109), Expect = 3e-04 Identities = 44/172 (25%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Frame = +2 Query: 524 KRLLRLMGVPVVEAP-CEAESQCAALCK--SDKVYAVA--SEDMDSLTFGAPRFVRHLMD 688 K +L+L G+P++E P EA+ A L + S K + V S D D L + + +++ Sbjct: 91 KEILKLAGIPLLELPGYEADDVIAYLAEKFSQKGFKVKIYSPDKDLLQLVSENVL--VIN 148 Query: 689 PSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCG--CDYCDSIKGIGGLTALKLIRQHG 862 P + ++ F +++++ + D L G D I+G+G TA+ +++++G Sbjct: 149 PMNDEV----FTKERVIKKFGVEPQKIPDYLALVGDKVDNVPGIEGVGPKTAINILKKYG 204 Query: 863 SIEGILENINKDKYQIP----EDWPYQ-EARRMFKEPSVTLDIPELKWTAPD 1003 S+E IL+N K + + P ED + +++ + + L +LK PD Sbjct: 205 SVENILKNWEKFQREFPRAKKEDLELSYKLVKLYTDLDIELSEEDLKIKRPD 256
>Q9CDS1:DPO1_LACLA DNA polymerase I - Lactococcus lactis subsp. lactis (Streptococcus| lactis) Length = 877 Score = 45.1 bits (105), Expect = 9e-04 Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 11/204 (5%) Frame = +2 Query: 524 KRLLRLMGVPVVE-APCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDPSSR 700 K ++ +G+ E A EA+ L DK+ + + D + + L+D ++R Sbjct: 98 KEMIEKLGIRHYELANYEADDIIGTL---DKMAEAPNVNFDVTIVTGDKDMIQLVDGNTR 154 Query: 701 ----KIPVMEFEVAK---ILEELEFTMDQFIDLCILCGCDYCDSIKGI---GGLTALKLI 850 K V EFE +LE++ T QFIDL L G D D+ G+ G T LKL+ Sbjct: 155 VEISKKGVAEFEEFTPDYLLEKMGLTPAQFIDLKALMG-DSSDNYPGVTKVGEKTGLKLL 213 Query: 851 RQHGSIEGILENINKDKYQIPEDWPYQEARRMFKEPSVTLDIPELKWTAPDEEGLVNFLV 1030 ++ GS+E + EN++ K ++ + F ++ + + AP E GL + L+ Sbjct: 214 QEFGSLENLYENVDSLKASKMKENLIADKEMAF----LSQQLATINTKAPIEIGLDDTLL 269 Query: 1031 KENGFSQDRVTKAIEKIKSAKNKS 1102 K G D +++ +++ A+ KS Sbjct: 270 K--GKKVDELSQFYDEMGFAQFKS 291
>Q04957:DPO1_BACCA DNA polymerase I - Bacillus caldotenax| Length = 877 Score = 43.5 bits (101), Expect = 0.003 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 13/175 (7%) Frame = +2 Query: 623 VASEDMDSLTFGAPRFVRHLMDPSSRKIPVME-FEVAKILEELEFTMDQFIDLCILCGCD 799 V S D D +P +D + + I +E + + E+ T +Q +DL L G D Sbjct: 130 VISGDRDLTQLASPHVT---VDITKKGITDIEPYTPEAVREKYGLTPEQIVDLKGLMG-D 185 Query: 800 YCDSIKGIGGL---TALKLIRQHGSIEGILENINKDKYQIPEDWPYQEARRMF------- 949 D+I G+ G+ TA+KL+RQ G++E +L +I++ K + ++ Q Sbjct: 186 KSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKGEKLKETLRQHREMALLSKKLAA 245 Query: 950 --KEPSVTLDIPELKWTAPDEEGLVNFLVKENGFSQDRVTKAIEKIKSAKNKSSQ 1108 ++ V L + ++ + D E +V L KE GF +EK++S ++ + Sbjct: 246 IRRDAPVELSLDDIAYQGEDREKVV-ALFKELGFQ-----SFLEKMESPSSEEEK 294
>Q9UTN2:YII1_SCHPO Uncharacterized protein C139.01c - Schizosaccharomyces pombe| (Fission yeast) Length = 802 Score = 41.2 bits (95), Expect = 0.013 Identities = 70/307 (22%), Positives = 111/307 (36%), Gaps = 51/307 (16%) Frame = +2 Query: 98 MGVKGLTKLLADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD 277 M ++ L + D K + S+ ++ +DAS + Q I+ T E + Sbjct: 1 MTIRSLNLFIIDK--KHQHKSSLSSFQNCKLGIDASFYLTQ--IIHSFTPQELQSLAVNG 56 Query: 278 VTSHLQGMFSRTIRLLEA-GIKPVYVFDGKPPEMKKDELLKRHAKRN--------EATEE 430 + +LQ S + L I P++VF+G P + L+ K+ EA + Sbjct: 57 ESEYLQHRISEFLEQLRTENITPIFVFNGIPLTFEASSQLEVPGKQKSHSALTDFEAFDP 116 Query: 431 LTKAVEAG----DTDAIEKF--SKRTVKVTKQHN------DDCKRLLRLMGVPVVEAPCE 574 ++ D + SK T+ T Q + D K L V AP Sbjct: 117 YDANIQRNMYRMDASGPANYGESKPTLLYTNQRDHLDRLCDQVKFYLDQCNVEYFVAPYL 176 Query: 575 AESQCAALCKS------DKVYAVASEDMDSLTFGAPRFVRHL---------MDPSSRKIP 709 A +Q A D +Y D L FG +F+ + DPSS Sbjct: 177 AMAQLAYFLNGTSSPYIDAIYG----STDLLLFGVKKFITSMNTSSNVKISSDPSSPSTQ 232 Query: 710 VMEFEVAK----------ILEELE-FTMDQFIDLCILCGCDYCDSIKGIGGL----TALK 844 AK +L++ + QFID C+LCG + I G +A++ Sbjct: 233 TTINSAAKSSFTWLDGNALLQDTNGLSWQQFIDSCLLCGTAISPTFPQIEGTFLIKSAME 292 Query: 845 LIRQHGS 865 L+R GS Sbjct: 293 LVRMFGS 299
>P40028:YEN1_YEAST Uncharacterized protein YER041W - Saccharomyces cerevisiae (Baker's| yeast) Length = 759 Score = 39.7 bits (91), Expect = 0.037 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 20/128 (15%) Frame = +2 Query: 524 KRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLM------ 685 ++LL LM + V A E E+QC L S V + S D D+L FG + +++ Sbjct: 177 RKLLDLMNISYVIACGEGEAQCVWLQVSGAVDFILSNDSDTLVFGGEKILKNYSKFYDDF 236 Query: 686 --------------DPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIKGI 823 D + V++ + +F + +L G DY +KG+ Sbjct: 237 GPSSITSHSPSRHHDSKESFVTVIDLPKINKVAGKKFDRLSLLFFSVLLGADYNRGVKGL 296 Query: 824 GGLTALKL 847 G +L+L Sbjct: 297 GKNKSLQL 304
>P46835:DPO1_MYCLE DNA polymerase I - Mycobacterium leprae| Length = 911 Score = 39.3 bits (90), Expect = 0.049 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 7/141 (4%) Frame = +2 Query: 515 DDCKRLLRLMGVPV-VEAPCEAESQCAALCKSDKVYA----VASEDMDSLTFGAPRFVRH 679 D K +L +G+ V EA EA+ A L + V + D D+L + Sbjct: 104 DITKEVLGALGITVFAEAGFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSNDVT-- 161 Query: 680 LMDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCG--CDYCDSIKGIGGLTALKLIR 853 ++ P + F ++E+ T Q+ DL L G D I G+G TA K I Sbjct: 162 VLYPRKGVSELTRFTPEAVIEKYGVTPAQYPDLAALRGDPSDNLPGIPGVGEKTAAKWIV 221 Query: 854 QHGSIEGILENINKDKYQIPE 916 +GS++G+++N+ + ++ E Sbjct: 222 DYGSLQGLVDNVESVRGKVGE 242
>Q96U60:NDC80_NEUCR Probable kinetochore protein ndc-80 - Neurospora crassa| Length = 743 Score = 37.0 bits (84), Expect = 0.24 Identities = 53/253 (20%), Positives = 107/253 (42%), Gaps = 19/253 (7%) Frame = +2 Query: 179 GRRIAVDASMSIYQFLIVVGRTGMETLTNEAGD------VTSHLQGMFSRTIRLLEAGIK 340 G +I D S YQ + + +EAGD + H+QGM R I+ Sbjct: 289 GDQIIFDFLTSAYQDWL--------NMDDEAGDEDVERALQPHVQGMAEAFERSNAKYIQ 340 Query: 341 PVYVFDGKPPEMKKD-ELLKRHAKRNEATEELTKAVEAGDTDAIEKFSKRTVKVTKQHND 517 + + +G+ + K+ + L++ + K +E D E+++ ++ T+++ + Sbjct: 341 ELEILEGENARLLKEIQELEKSTPDPAILDNHFKIMEE-DKIKFEEYNTLAMQRTEKYEN 399 Query: 518 DCKRLLRLMGVPVVEAPCEAESQCAALCKSDKVYAVASEDMDSLTFGAPRFVRHLMDPSS 697 + L +G VE EAE + + K+ ++ +D+D +T R R + S Sbjct: 400 RIQVLREELGKLHVELK-EAEEERRQMQKAVDDQGISMQDIDRMTSERERLQRSIESASQ 458 Query: 698 R------KIPVMEFEVAKILEELEFTMDQFIDLCILCGCDYCDSIKGIGGLTALKLIRQH 859 R K+ E E ++ L+ELE ++++ + G ++ G L++ Sbjct: 459 RLEDVKKKVAEREMEASQRLDELERLVEKYNTVAYQIGLIPATAVNAKGKNLELQVTVNE 518 Query: 860 G------SIEGIL 880 G S++G+L Sbjct: 519 GTPNFASSMQGVL 531
>O34996:DPO1_BACSU DNA polymerase I - Bacillus subtilis| Length = 880 Score = 37.0 bits (84), Expect = 0.24 Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 3/57 (5%) Frame = +2 Query: 734 ILEELEFTMDQFIDLCILCGCDYCDSIKGIGGL---TALKLIRQHGSIEGILENINK 895 + E+ T +Q ID+ L G D D+I G+ G+ TA+KL++Q S+E +LE+I++ Sbjct: 167 VKEKYGLTPEQIIDMKGLMG-DSSDNIPGVPGVGEKTAIKLLKQFDSVEKLLESIDE 222
>Q4V7C8:CEP55_RAT Centrosomal protein of 55 kDa - Rattus norvegicus (Rat)| Length = 462 Score = 37.0 bits (84), Expect = 0.24 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 5/144 (3%) Frame = +2 Query: 125 LADNAPKSMREQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGDVTSHLQGMF 304 ++ +PK + + K+ S + D ++ ++ I +T ++ +TN G V + + Sbjct: 1 MSSRSPKDLIKSKWGSRPSSSKS-DTALEKFKGEIAAFKTSLDEITNGKGKVANKDRSKL 59 Query: 305 SRTIRLLEA-GIKPVYVFDGKPPEMK--KDELLKRHAKRN--EATEELTKAVEAGDTDAI 469 I++LEA K VY K E++ KD L R++ + E EE TK E + Sbjct: 60 LEKIQVLEAEREKNVYYLMEKDKEIQRLKDHLRSRYSSSSLLEQLEEKTKECEK-KQQLL 118 Query: 470 EKFSKRTVKVTKQHNDDCKRLLRL 541 E S+ T + KQ + KRL L Sbjct: 119 ESLSRETDILKKQLSATTKRLSEL 142
>P12351:HAP1_YEAST Heme-responsive zinc finger transcription factor HAP1 -| Saccharomyces cerevisiae (Baker's yeast) Length = 1483 Score = 35.8 bits (81), Expect = 0.54 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Frame = +2 Query: 617 YAVASEDMDSLTFGAPRFVRHLMDPSSRKIP-VMEFEVAKILEEL----EFTMDQFIDLC 781 Y V+ + SL+ G+PR +R+L D S K+P + + ++EL FT+ IDLC Sbjct: 783 YIVSMDVNQSLSLGSPRLLRNLRDFSDTKLPSASRIDYVRDIKELIIVKNFTLFFQIDLC 842 Query: 782 IL 787 I+ Sbjct: 843 II 844
>P0A550:DPO1_MYCTU DNA polymerase I - Mycobacterium tuberculosis| Length = 904 Score = 35.8 bits (81), Expect = 0.54 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 7/133 (5%) Frame = +2 Query: 515 DDCKRLLRLMGVPVVEAP-CEAESQCAALCKSDKVYA----VASEDMDSLTFGAPRFVRH 679 D K +L +G+ V+ P EA+ A L + V + D D+L + Sbjct: 103 DITKEVLGALGITVLSEPGFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSDDVT-- 160 Query: 680 LMDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCG--CDYCDSIKGIGGLTALKLIR 853 ++ P + F ++E+ T Q+ D L G D I G+G TA K I Sbjct: 161 VLYPRKGVSELTRFTPEAVVEKYGLTPRQYPDFAALRGDPSDNLPGIPGVGEKTAAKWIA 220 Query: 854 QHGSIEGILENIN 892 ++GS+ +++N++ Sbjct: 221 EYGSLRSLVDNVD 233
>P0A551:DPO1_MYCBO DNA polymerase I - Mycobacterium bovis| Length = 904 Score = 35.8 bits (81), Expect = 0.54 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 7/133 (5%) Frame = +2 Query: 515 DDCKRLLRLMGVPVVEAP-CEAESQCAALCKSDKVYA----VASEDMDSLTFGAPRFVRH 679 D K +L +G+ V+ P EA+ A L + V + D D+L + Sbjct: 103 DITKEVLGALGITVLSEPGFEADDLIATLATQAENEGYRVLVVTGDRDALQLVSDDVT-- 160 Query: 680 LMDPSSRKIPVMEFEVAKILEELEFTMDQFIDLCILCG--CDYCDSIKGIGGLTALKLIR 853 ++ P + F ++E+ T Q+ D L G D I G+G TA K I Sbjct: 161 VLYPRKGVSELTRFTPEAVVEKYGLTPRQYPDFAALRGDPSDNLPGIPGVGEKTAAKWIA 220 Query: 854 QHGSIEGILENIN 892 ++GS+ +++N++ Sbjct: 221 EYGSLRSLVDNVD 233
>P54161:EX53_BACSU Probable 5'-3' exonuclease - Bacillus subtilis| Length = 296 Score = 34.7 bits (78), Expect = 1.2 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%) Frame = +2 Query: 740 EELEFTMDQFIDLCILCG--CDYCDSIKGIGGLTALKLIRQHGSIEGILENIN 892 EE ID+ L G D +KGIG TA KLIR++ +I+ +LEN++ Sbjct: 171 EETGVMPKALIDIKALMGDSSDNYPGVKGIGEKTAYKLIREYETIDRLLENLS 223
>Q1RH76:DPO1_RICBR DNA polymerase I - Rickettsia bellii (strain RML369-C)| Length = 871 Score = 34.3 bits (77), Expect = 1.6 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 12/116 (10%) Frame = +2 Query: 734 ILEELEFTMDQFIDLCILCGCDYCDSIKG---IGGLTALKLIRQHGSIEGILENIN---- 892 ++E+ T D+ ++ L G D D+I G IG TA LI Q G++E I ++ Sbjct: 163 VVEKFGVTSDKLREVMALIG-DKSDNIPGVPSIGPKTASSLITQFGTVENIFNSLEQVSS 221 Query: 893 ---KDKYQIPEDWPYQEARRMFKEPSVTLD--IPELKWTAPDEEGLVNFLVKENGF 1045 ++ Q ++ + + + +V +D + L+W+ PD L FL E GF Sbjct: 222 IKQRETLQNSKEAALISWQLIGLDYNVDMDFKLDALEWSPPDHNKLTEFL-HEYGF 276
>P59295:ARGB_BIFLO Acetylglutamate kinase - Bifidobacterium longum| Length = 305 Score = 34.3 bits (77), Expect = 1.6 Identities = 14/54 (25%), Positives = 29/54 (53%) Frame = +2 Query: 230 VVGRTGMETLTNEAGDVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDEL 391 ++GR G+E L + D+ S ++ +R ++ G+ +V DG+ P +E+ Sbjct: 228 LIGRIGVENLRDMLPDLESGMRPKMEACVRAIDGGVPQAHVIDGRKPHSILNEI 281
>Q03345:LIN3_CAEEL Protein lin-3 precursor - Caenorhabditis elegans| Length = 438 Score = 32.3 bits (72), Expect = 6.0 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Frame = +2 Query: 242 TGMETLTNEAGDVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPEMKKDELLKRHAKRNE- 418 T ET +EAGD RT + + I+ ++G+ + K DE ++ K NE Sbjct: 77 TPTETTISEAGDDEK-------RTEEVAKELIEKEAEYEGEYEDEKVDEEVEEALKYNED 129 Query: 419 ATEELTKAVEAGDTDAIEKFSKRTVKVTKQHNDDC 523 AT++ T ++ IEK + K HN C Sbjct: 130 ATQDATSTLKPAVRKEIEKLKEAKCKDYCHHNATC 164
>P56105:DPO1_HELPY DNA polymerase I - Helicobacter pylori (Campylobacter pylori)| Length = 891 Score = 32.0 bits (71), Expect = 7.8 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = +2 Query: 716 EFEVAKILEELEFTMDQFIDLCILCG--CDYCDSIKGIGGLTALKLIRQHGSIEGILENI 889 EF +E+ QF D + G D +KGIG A +L+++ GS+E I EN+ Sbjct: 160 EFLAKDCVEKYGILPSQFTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENL 219 Query: 890 NKDK 901 + K Sbjct: 220 DLAK 223
>Q9ZJE9:DPO1_HELPJ DNA polymerase I - Helicobacter pylori J99 (Campylobacter pylori| J99) Length = 897 Score = 32.0 bits (71), Expect = 7.8 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = +2 Query: 716 EFEVAKILEELEFTMDQFIDLCILCG--CDYCDSIKGIGGLTALKLIRQHGSIEGILENI 889 EF +E+ QF D + G D +KGIG A +L+++ GS+E I EN+ Sbjct: 160 EFLAKDCVEKYGILPSQFTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENL 219 Query: 890 NKDK 901 + K Sbjct: 220 DLAK 223 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 247,337,544 Number of extensions: 5186643 Number of successful extensions: 14383 Number of sequences better than 10.0: 72 Number of HSP's gapped: 14291 Number of HSP's successfully gapped: 78 Length of query: 545 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 427 Effective length of database: 68,319,629 Effective search space: 29172481583 Effective search space used: 29172481583 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
