ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf28j16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT830743.1| Oryza sativa (indica cultivar-group) cDNA clone:... 163 6e-37
2emb|CT834066.1| Oryza sativa (indica cultivar-group) cDNA clone:... 163 6e-37
3emb|CT834065.1| Oryza sativa (indica cultivar-group) cDNA clone:... 163 6e-37
4emb|CT834064.1| Oryza sativa (indica cultivar-group) cDNA clone:... 163 6e-37
5emb|CT834063.1| Oryza sativa (indica cultivar-group) cDNA clone:... 163 6e-37
6ref|NM_001060680.1| Oryza sativa (japonica cultivar-group) Os04g... 163 6e-37
7dbj|AK120899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 6e-37
8gb|DQ245624.1| Zea mays clone 18473 mRNA sequence 137 4e-29
9gb|AY103628.1| Zea mays PCO109231 mRNA sequence 127 4e-26
10emb|CR855168.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 68 3e-08
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
12emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4,... 68 3e-08
13emb|CT984762.1| partial cDNA sequence from a Lambda ZAP II norma... 58 3e-05
14emb|CT984611.1| partial cDNA sequence from a Lambda ZAP II norma... 58 3e-05
15emb|CT980849.1| partial cDNA sequence from a Lambda ZAP II norma... 58 3e-05
16emb|CT980135.1| partial cDNA sequence from a Lambda ZAP II norma... 58 3e-05
17ref|NM_202894.1| Arabidopsis thaliana hydrogen-transporting ATP ... 50 0.007
18ref|NM_118805.2| Arabidopsis thaliana hydrogen-transporting ATP ... 50 0.007
19gb|BT000074.1| Arabidopsis thaliana putative protein (At4g26710)... 50 0.007
20gb|AY093013.1| Arabidopsis thaliana putative protein (At4g26710)... 50 0.007
21gb|AY084532.1| Arabidopsis thaliana clone 111016 mRNA, complete ... 50 0.007
22emb|AJ438879.1|MCR438879 Mesembryanthemum crystallinum mRNA for ... 46 0.10
23gb|AC189587.1| Brassica rapa subsp. pekinensis clone KBrH012K23,... 44 0.41
24emb|AL138820.11| Human DNA sequence from clone RP11-380B4 on chr... 44 0.41
25emb|Z92540.1|HS179I15A Human DNA sequence from clone RP1-179I15 ... 44 0.41
26gb|AC158351.4| Mus musculus chromosome 8, clone RP24-274N3, comp... 42 1.6
27gb|AC116861.27| Mus musculus chromosome 8, clone RP24-407N9, com... 42 1.6
28gb|AC104740.2| Homo sapiens chromosome 3 clone RP11-46D21, compl... 42 1.6
29gb|AF204951.2|AF204951 Ectocarpus siliculosus virus, complete ge... 42 1.6
30gb|AC121253.3| Homo sapiens chromosome 3 clone RP11-208G16, comp... 42 1.6
31gb|AC154557.2| Mus musculus BAC clone RP23-425M9 from 17, comple... 42 1.6
32gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.6
33emb|CT030155.10| Mouse DNA sequence from clone RP23-425N11 on ch... 42 1.6
34ref|XM_417421.2| PREDICTED: Gallus gallus hypothetical LOC419247... 40 6.4
35ref|XM_366303.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 6.4
36ref|NM_124911.1| Arabidopsis thaliana hydrogen-transporting ATP ... 40 6.4
37gb|AE012530.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.4
38gb|AY057717.1| Arabidopsis thaliana AT5g55290/MCO15_24 mRNA, com... 40 6.4
39gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.4
40gb|AF372884.1|AF372884 Arabidopsis thaliana AT5g55290/MCO15_24 m... 40 6.4
41gb|AC110078.2| Homo sapiens BAC clone RP11-358N5 from 2, complet... 40 6.4
42gb|AC010740.7| Homo sapiens BAC clone RP11-493I5 from 2, complet... 40 6.4
43emb|BX833920.1|CNS0A20W Arabidopsis thaliana Full-length cDNA Co... 40 6.4
44emb|BX832924.1|CNS0A216 Arabidopsis thaliana Full-length cDNA Co... 40 6.4

>emb|CT830743.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z68, full
           insert sequence
          Length = 525
 Score =  163 bits (82), Expect = 6e-37
 Identities = 184/218 (84%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccggcgatggggttcctggtgacctccgccatcttcttcttggccggcttcatcgcctgc 132
           ||||| |||||||||  ||||||| |   ||||||| || | ||||||||| |||||| |
Sbjct: 125 ccggccatggggttctgggtgaccacgctcatcttcctcctcgccggcttcgtcgcctcc 184

                                                                       
Query: 133 atgttctcgctcctctgctgcaaccgcggcgcctccaccaacatattccatttgactctg 192
            | |||||||| |||||||||||||||||  | || |||||| |||||||||||||  ||
Sbjct: 185 ctcttctcgctgctctgctgcaaccgcgggccgtcgaccaacctattccatttgaccttg 244

                                                                       
Query: 193 gttattaccgctacagtttgttgttggatgatgtgggcaatcgtgtacctcgcgcagatg 252
           |||||||| || || ||||| ||||||||||||||||||||||| || || |||||| ||
Sbjct: 245 gttattacagcaacggtttgctgttggatgatgtgggcaatcgtctatcttgcgcagctg 304

                                                 
Query: 253 aagcctttgatcaaccccatcctgagcggcgagtgagc 290
           |||||  |||||||||| ||||| ||||||||||||||
Sbjct: 305 aagccactgatcaaccctatcctaagcggcgagtgagc 342



to top

>emb|CT834066.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI021F12, full
           insert sequence
          Length = 565

 Score =  163 bits (82), Expect = 6e-37
 Identities = 184/218 (84%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccggcgatggggttcctggtgacctccgccatcttcttcttggccggcttcatcgcctgc 132
           ||||| |||||||||  ||||||| |   ||||||| || | ||||||||| |||||| |
Sbjct: 127 ccggccatggggttctgggtgaccacgctcatcttcctcctcgccggcttcgtcgcctcc 186

                                                                       
Query: 133 atgttctcgctcctctgctgcaaccgcggcgcctccaccaacatattccatttgactctg 192
            | |||||||| |||||||||||||||||  | || |||||| |||||||||||||  ||
Sbjct: 187 ctcttctcgctgctctgctgcaaccgcgggccgtcgaccaacctattccatttgaccttg 246

                                                                       
Query: 193 gttattaccgctacagtttgttgttggatgatgtgggcaatcgtgtacctcgcgcagatg 252
           |||||||| || || ||||| ||||||||||||||||||||||| || || |||||| ||
Sbjct: 247 gttattacagcaacggtttgctgttggatgatgtgggcaatcgtctatcttgcgcagctg 306

                                                 
Query: 253 aagcctttgatcaaccccatcctgagcggcgagtgagc 290
           |||||  |||||||||| ||||| ||||||||||||||
Sbjct: 307 aagccactgatcaaccctatcctaagcggcgagtgagc 344



to top

>emb|CT834065.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI018M20, full
           insert sequence
          Length = 590

 Score =  163 bits (82), Expect = 6e-37
 Identities = 184/218 (84%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccggcgatggggttcctggtgacctccgccatcttcttcttggccggcttcatcgcctgc 132
           ||||| |||||||||  ||||||| |   ||||||| || | ||||||||| |||||| |
Sbjct: 125 ccggccatggggttctgggtgaccacgctcatcttcctcctcgccggcttcgtcgcctcc 184

                                                                       
Query: 133 atgttctcgctcctctgctgcaaccgcggcgcctccaccaacatattccatttgactctg 192
            | |||||||| |||||||||||||||||  | || |||||| |||||||||||||  ||
Sbjct: 185 ctcttctcgctgctctgctgcaaccgcgggccgtcgaccaacctattccatttgaccttg 244

                                                                       
Query: 193 gttattaccgctacagtttgttgttggatgatgtgggcaatcgtgtacctcgcgcagatg 252
           |||||||| || || ||||| ||||||||||||||||||||||| || || |||||| ||
Sbjct: 245 gttattacagcaacggtttgctgttggatgatgtgggcaatcgtctatcttgcgcagctg 304

                                                 
Query: 253 aagcctttgatcaaccccatcctgagcggcgagtgagc 290
           |||||  |||||||||| ||||| ||||||||||||||
Sbjct: 305 aagccactgatcaaccctatcctaagcggcgagtgagc 342



to top

>emb|CT834064.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013H23, full
           insert sequence
          Length = 589

 Score =  163 bits (82), Expect = 6e-37
 Identities = 184/218 (84%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccggcgatggggttcctggtgacctccgccatcttcttcttggccggcttcatcgcctgc 132
           ||||| |||||||||  ||||||| |   ||||||| || | ||||||||| |||||| |
Sbjct: 126 ccggccatggggttctgggtgaccacgctcatcttcctcctcgccggcttcgtcgcctcc 185

                                                                       
Query: 133 atgttctcgctcctctgctgcaaccgcggcgcctccaccaacatattccatttgactctg 192
            | |||||||| |||||||||||||||||  | || |||||| |||||||||||||  ||
Sbjct: 186 ctcttctcgctgctctgctgcaaccgcgggccgtcgaccaacctattccatttgaccttg 245

                                                                       
Query: 193 gttattaccgctacagtttgttgttggatgatgtgggcaatcgtgtacctcgcgcagatg 252
           |||||||| || || ||||| ||||||||||||||||||||||| || || |||||| ||
Sbjct: 246 gttattacagcaacggtttgctgttggatgatgtgggcaatcgtctatcttgcgcagctg 305

                                                 
Query: 253 aagcctttgatcaaccccatcctgagcggcgagtgagc 290
           |||||  |||||||||| ||||| ||||||||||||||
Sbjct: 306 aagccactgatcaaccctatcctaagcggcgagtgagc 343



to top

>emb|CT834063.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI009I12, full
           insert sequence
          Length = 573

 Score =  163 bits (82), Expect = 6e-37
 Identities = 184/218 (84%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccggcgatggggttcctggtgacctccgccatcttcttcttggccggcttcatcgcctgc 132
           ||||| |||||||||  ||||||| |   ||||||| || | ||||||||| |||||| |
Sbjct: 110 ccggccatggggttctgggtgaccacgctcatcttcctcctcgccggcttcgtcgcctcc 169

                                                                       
Query: 133 atgttctcgctcctctgctgcaaccgcggcgcctccaccaacatattccatttgactctg 192
            | |||||||| |||||||||||||||||  | || |||||| |||||||||||||  ||
Sbjct: 170 ctcttctcgctgctctgctgcaaccgcgggccgtcgaccaacctattccatttgaccttg 229

                                                                       
Query: 193 gttattaccgctacagtttgttgttggatgatgtgggcaatcgtgtacctcgcgcagatg 252
           |||||||| || || ||||| ||||||||||||||||||||||| || || |||||| ||
Sbjct: 230 gttattacagcaacggtttgctgttggatgatgtgggcaatcgtctatcttgcgcagctg 289

                                                 
Query: 253 aagcctttgatcaaccccatcctgagcggcgagtgagc 290
           |||||  |||||||||| ||||| ||||||||||||||
Sbjct: 290 aagccactgatcaaccctatcctaagcggcgagtgagc 327



to top

>ref|NM_001060680.1| Oryza sativa (japonica cultivar-group) Os04g0660600 (Os04g0660600)
           mRNA, complete cds
          Length = 573

 Score =  163 bits (82), Expect = 6e-37
 Identities = 184/218 (84%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccggcgatggggttcctggtgacctccgccatcttcttcttggccggcttcatcgcctgc 132
           ||||| |||||||||  ||||||| |   ||||||| || | ||||||||| |||||| |
Sbjct: 118 ccggccatggggttctgggtgaccacgctcatcttcctcctcgccggcttcgtcgcctcc 177

                                                                       
Query: 133 atgttctcgctcctctgctgcaaccgcggcgcctccaccaacatattccatttgactctg 192
            | |||||||| |||||||||||||||||  | || |||||| |||||||||||||  ||
Sbjct: 178 ctcttctcgctgctctgctgcaaccgcgggccgtcgaccaacctattccatttgaccttg 237

                                                                       
Query: 193 gttattaccgctacagtttgttgttggatgatgtgggcaatcgtgtacctcgcgcagatg 252
           |||||||| || || ||||| ||||||||||||||||||||||| || || |||||| ||
Sbjct: 238 gttattacagcaacggtttgctgttggatgatgtgggcaatcgtctatcttgcgcagctg 297

                                                 
Query: 253 aagcctttgatcaaccccatcctgagcggcgagtgagc 290
           |||||  |||||||||| ||||| ||||||||||||||
Sbjct: 298 aagccactgatcaaccctatcctaagcggcgagtgagc 335



to top

>dbj|AK120899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030J05, full
           insert sequence
          Length = 575

 Score =  163 bits (82), Expect = 6e-37
 Identities = 184/218 (84%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccggcgatggggttcctggtgacctccgccatcttcttcttggccggcttcatcgcctgc 132
           ||||| |||||||||  ||||||| |   ||||||| || | ||||||||| |||||| |
Sbjct: 119 ccggccatggggttctgggtgaccacgctcatcttcctcctcgccggcttcgtcgcctcc 178

                                                                       
Query: 133 atgttctcgctcctctgctgcaaccgcggcgcctccaccaacatattccatttgactctg 192
            | |||||||| |||||||||||||||||  | || |||||| |||||||||||||  ||
Sbjct: 179 ctcttctcgctgctctgctgcaaccgcgggccgtcgaccaacctattccatttgaccttg 238

                                                                       
Query: 193 gttattaccgctacagtttgttgttggatgatgtgggcaatcgtgtacctcgcgcagatg 252
           |||||||| || || ||||| ||||||||||||||||||||||| || || |||||| ||
Sbjct: 239 gttattacagcaacggtttgctgttggatgatgtgggcaatcgtctatcttgcgcagctg 298

                                                 
Query: 253 aagcctttgatcaaccccatcctgagcggcgagtgagc 290
           |||||  |||||||||| ||||| ||||||||||||||
Sbjct: 299 aagccactgatcaaccctatcctaagcggcgagtgagc 336



to top

>gb|DQ245624.1| Zea mays clone 18473 mRNA sequence
          Length = 462

 Score =  137 bits (69), Expect = 4e-29
 Identities = 129/149 (86%)
 Strand = Plus / Plus

                                                                       
Query: 140 cgctcctctgctgcaaccgcggcgcctccaccaacatattccatttgactctggttatta 199
           ||||||||||||||||||||||  ||||||| ||| |||||||||||||  |||| | ||
Sbjct: 178 cgctcctctgctgcaaccgcgggccctccacaaacctattccatttgaccttggtgacta 237

                                                                       
Query: 200 ccgctacagtttgttgttggatgatgtgggcaatcgtgtacctcgcgcagatgaagcctt 259
           | |||  | ||||||||||||||||||  || ||||| ||||| || ||||||||||| |
Sbjct: 238 cagctgtaatttgttgttggatgatgtatgctatcgtttaccttgctcagatgaagccat 297

                                        
Query: 260 tgatcaaccccatcctgagcggcgagtga 288
           |||||||||||||||||||||| ||||||
Sbjct: 298 tgatcaaccccatcctgagcggggagtga 326



to top

>gb|AY103628.1| Zea mays PCO109231 mRNA sequence
          Length = 1907

 Score =  127 bits (64), Expect = 4e-26
 Identities = 133/156 (85%)
 Strand = Plus / Plus

                                                                        
Query: 140  cgctcctctgctgcaaccgcggcgcctccaccaacatattccatttgactctggttatta 199
            ||||||||||||||||||||||  ||||||| ||| | |||||||||||  |||| | ||
Sbjct: 1535 cgctcctctgctgcaaccgcgggccctccacaaacctgttccatttgaccttggtgacta 1594

                                                                        
Query: 200  ccgctacagtttgttgttggatgatgtgggcaatcgtgtacctcgcgcagatgaagcctt 259
            | |||  | ||||||| ||||||||||  |||||||| ||||| || ||||||||||| |
Sbjct: 1595 cagctgtaatttgttgctggatgatgtatgcaatcgtctaccttgctcagatgaagccat 1654

                                                
Query: 260  tgatcaaccccatcctgagcggcgagtgagccctgc 295
            ||||||||||||| |||||||| |||||||| ||||
Sbjct: 1655 tgatcaaccccattctgagcggagagtgagcgctgc 1690



to top

>emb|CR855168.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0112G12, complete
             sequence
          Length = 103646

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                         
Query: 225   gtgggcaatcgtgtacctcgcgcagatgaagcctttgatcaaccccatcctgagcggcga 284
             |||||||||||| || || |||||| |||||||  |||||||||| ||||| ||||||||
Sbjct: 42606 gtgggcaatcgtctatcttgcgcagctgaagccactgatcaaccctatcctaagcggcga 42547

                   
Query: 285   gtgagc 290
             ||||||
Sbjct: 42546 gtgagc 42541



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                         
Query: 73    ccggcgatggggttcctggtgacctccgccatcttcttcttggccggcttcatcgcctgc 132
             ||||| |||||||||  ||||||| |   ||||||| || | ||||||||| |||||| |
Sbjct: 44827 ccggccatggggttctgggtgaccacgctcatcttcctcctcgccggcttcgtcgcctcc 44768

                                          
Query: 133   atgttctcgctcctctgctgcaaccgcgg 161
              | |||||||| |||||||||||||||||
Sbjct: 44767 ctcttctcgctgctctgctgcaaccgcgg 44739



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 177   attccatttgactctggttattaccgctacagtttgttgttggatgatgt 226
             ||||||||||||  |||||||||| || || ||||| |||||||||||||
Sbjct: 43286 attccatttgaccttggttattacagcaacggtttgctgttggatgatgt 43237



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                            
Query: 225      gtgggcaatcgtgtacctcgcgcagatgaagcctttgatcaaccccatcctgagcggcga 284
                |||||||||||| || || |||||| |||||||  |||||||||| ||||| ||||||||
Sbjct: 33754921 gtgggcaatcgtctatcttgcgcagctgaagccactgatcaaccctatcctaagcggcga 33754862

                      
Query: 285      gtgagc 290
                ||||||
Sbjct: 33754861 gtgagc 33754856



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                            
Query: 73       ccggcgatggggttcctggtgacctccgccatcttcttcttggccggcttcatcgcctgc 132
                ||||| |||||||||  ||||||| |   ||||||| || | ||||||||| |||||| |
Sbjct: 33757062 ccggccatggggttctgggtgaccacgctcatcttcctcctcgccggcttcgtcgcctcc 33757003

                                             
Query: 133      atgttctcgctcctctgctgcaaccgcgg 161
                 | |||||||| |||||||||||||||||
Sbjct: 33757002 ctcttctcgctgctctgctgcaaccgcgg 33756974



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 177      attccatttgactctggttattaccgctacagtttgttgttggatgatgt 226
                ||||||||||||  |||||||||| || || ||||| |||||||||||||
Sbjct: 33755601 attccatttgaccttggttattacagcaacggtttgctgttggatgatgt 33755552



to top

>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02,
              complete sequence
          Length = 153623

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                          
Query: 225    gtgggcaatcgtgtacctcgcgcagatgaagcctttgatcaaccccatcctgagcggcga 284
              |||||||||||| || || |||||| |||||||  |||||||||| ||||| ||||||||
Sbjct: 105364 gtgggcaatcgtctatcttgcgcagctgaagccactgatcaaccctatcctaagcggcga 105305

                    
Query: 285    gtgagc 290
              ||||||
Sbjct: 105304 gtgagc 105299



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                          
Query: 73     ccggcgatggggttcctggtgacctccgccatcttcttcttggccggcttcatcgcctgc 132
              ||||| |||||||||  ||||||| |   ||||||| || | ||||||||| |||||| |
Sbjct: 107505 ccggccatggggttctgggtgaccacgctcatcttcctcctcgccggcttcgtcgcctcc 107446

                                           
Query: 133    atgttctcgctcctctgctgcaaccgcgg 161
               | |||||||| |||||||||||||||||
Sbjct: 107445 ctcttctcgctgctctgctgcaaccgcgg 107417



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 177    attccatttgactctggttattaccgctacagtttgttgttggatgatgt 226
              ||||||||||||  |||||||||| || || ||||| |||||||||||||
Sbjct: 106044 attccatttgaccttggttattacagcaacggtttgctgttggatgatgt 105995



to top

>emb|CT984762.1| partial cDNA sequence from a Lambda ZAP II normalized full-length
           cDNA library of differentiating xylem from Eucalyptus
           gunnii
          Length = 558

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                       
Query: 194 ttattaccgctacagtttgttgttggatgatgtgggcaatcgtgtacctcgcgcagatga 253
           ||||||| || ||||| ||||||||||||||||||||||| || || ||||| || ||||
Sbjct: 276 ttattacagcaacagtatgttgttggatgatgtgggcaattgtatatctcgctcaaatga 335

            
Query: 254 a 254
           |
Sbjct: 336 a 336



to top

>emb|CT984611.1| partial cDNA sequence from a Lambda ZAP II normalized full-length
           cDNA library of differentiating xylem from Eucalyptus
           gunnii
          Length = 553

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                       
Query: 194 ttattaccgctacagtttgttgttggatgatgtgggcaatcgtgtacctcgcgcagatga 253
           ||||||| || ||||| ||||||||||||||||||||||| || || ||||| || ||||
Sbjct: 266 ttattacagcaacagtatgttgttggatgatgtgggcaattgtatatctcgctcaaatga 325

            
Query: 254 a 254
           |
Sbjct: 326 a 326



to top

>emb|CT980849.1| partial cDNA sequence from a Lambda ZAP II normalized full-length
           cDNA library of differentiating xylem from Eucalyptus
           gunnii
          Length = 560

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                       
Query: 194 ttattaccgctacagtttgttgttggatgatgtgggcaatcgtgtacctcgcgcagatga 253
           ||||||| || ||||| ||||||||||||||||||||||| || || ||||| || ||||
Sbjct: 276 ttattacagcaacagtatgttgttggatgatgtgggcaattgtatatctcgctcaaatga 335

            
Query: 254 a 254
           |
Sbjct: 336 a 336



to top

>emb|CT980135.1| partial cDNA sequence from a Lambda ZAP II normalized full-length
           cDNA library of differentiating xylem from Eucalyptus
           gunnii
          Length = 558

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                       
Query: 194 ttattaccgctacagtttgttgttggatgatgtgggcaatcgtgtacctcgcgcagatga 253
           ||||||| || ||||| ||||||||||||||||||||||| || || ||||| || ||||
Sbjct: 276 ttattacagcaacagtatgttgttggatgatgtgggcaattgtatatctcgctcaaatga 335

            
Query: 254 a 254
           |
Sbjct: 336 a 336



to top

>ref|NM_202894.1| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational
           mechanism / hydrogen-transporting ATPase, rotational
           mechanism (AT4G26710) mRNA, complete cds
          Length = 588

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 214 tgttggatgatgtgggcaatcgtgtacctcgcgcagatgaa 254
           |||||||||||||||||||| || ||| | |||||||||||
Sbjct: 244 tgttggatgatgtgggcaattgtatacattgcgcagatgaa 284



to top

>ref|NM_118805.2| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational
           mechanism / hydrogen-transporting ATPase, rotational
           mechanism (AT4G26710) mRNA, complete cds
          Length = 553

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 214 tgttggatgatgtgggcaatcgtgtacctcgcgcagatgaa 254
           |||||||||||||||||||| || ||| | |||||||||||
Sbjct: 209 tgttggatgatgtgggcaattgtatacattgcgcagatgaa 249



to top

>gb|BT000074.1| Arabidopsis thaliana putative protein (At4g26710) mRNA, complete
           cds
          Length = 336

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 214 tgttggatgatgtgggcaatcgtgtacctcgcgcagatgaa 254
           |||||||||||||||||||| || ||| | |||||||||||
Sbjct: 136 tgttggatgatgtgggcaattgtatacattgcgcagatgaa 176



to top

>gb|AY093013.1| Arabidopsis thaliana putative protein (At4g26710) mRNA, complete
           cds
          Length = 565

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 214 tgttggatgatgtgggcaatcgtgtacctcgcgcagatgaa 254
           |||||||||||||||||||| || ||| | |||||||||||
Sbjct: 224 tgttggatgatgtgggcaattgtatacattgcgcagatgaa 264



to top

>gb|AY084532.1| Arabidopsis thaliana clone 111016 mRNA, complete sequence
          Length = 568

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 214 tgttggatgatgtgggcaatcgtgtacctcgcgcagatgaa 254
           |||||||||||||||||||| || ||| | |||||||||||
Sbjct: 244 tgttggatgatgtgggcaattgtatacattgcgcagatgaa 284



to top

>emb|AJ438879.1|MCR438879 Mesembryanthemum crystallinum mRNA for vacuolar ATPase subunit
           e-like protein (vha-e gene)
          Length = 545

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                       
Query: 191 tggttattaccgctacagtttgttgttggatgatgtgggcaatcgtgtacctcgcgcaga 250
           ||||| |||| || || ||||| ||||||||||||||||| || || || || || ||||
Sbjct: 114 tggttcttacagcaacggtttgctgttggatgatgtgggctattgtatatcttgcacaga 173

                  
Query: 251 tgaagcc 257
           |||||||
Sbjct: 174 tgaagcc 180



to top

>gb|AC189587.1| Brassica rapa subsp. pekinensis clone KBrH012K23, complete sequence
          Length = 128564

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 225   gtgggcaatcgtgtacctcgcgcagatgaagcct 258
             |||||||||||| ||| | |||||||||||||||
Sbjct: 41442 gtgggcaatcgtttacattgcgcagatgaagcct 41409



to top

>emb|AL138820.11| Human DNA sequence from clone RP11-380B4 on chromosome 13 Contains the 3'
              end of the KIAA0979 gene and part of a novel gene, complete
              sequence
          Length = 168487

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 355    cattttgttgccatgactggaa 376
              ||||||||||||||||||||||
Sbjct: 143674 cattttgttgccatgactggaa 143695



to top

>emb|Z92540.1|HS179I15A Human DNA sequence from clone RP1-179I15 on chromosome 13. Contains a
            novel gene, a mitochondrial import receptor TOM22
            pseudogene, the 5' end of the KL gene for klotho, ESTs,
            STSs and a CpG island, complete sequence
          Length = 146810

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 355  cattttgttgccatgactggaa 376
            ||||||||||||||||||||||
Sbjct: 7041 cattttgttgccatgactggaa 7062



to top

>gb|AC158351.4| Mus musculus chromosome 8, clone RP24-274N3, complete sequence
          Length = 167820

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 129   ctgcatgttctcgctcctctgctgc 153
             |||||||||||||||||| ||||||
Sbjct: 10054 ctgcatgttctcgctcctatgctgc 10030



to top

>gb|AC116861.27| Mus musculus chromosome 8, clone RP24-407N9, complete sequence
          Length = 173343

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 129   ctgcatgttctcgctcctctgctgc 153
             |||||||||||||||||| ||||||
Sbjct: 41692 ctgcatgttctcgctcctatgctgc 41716



to top

>gb|AC104740.2| Homo sapiens chromosome 3 clone RP11-46D21, complete sequence
          Length = 156801

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 345   aacctctattcattttgttgc 365
             |||||||||||||||||||||
Sbjct: 20146 aacctctattcattttgttgc 20126



to top

>gb|AF204951.2|AF204951 Ectocarpus siliculosus virus, complete genome
          Length = 335593

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 98     ccgccatcttcttcttggccg 118
              |||||||||||||||||||||
Sbjct: 122348 ccgccatcttcttcttggccg 122328



to top

>gb|AC121253.3| Homo sapiens chromosome 3 clone RP11-208G16, complete sequence
          Length = 142193

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 345    aacctctattcattttgttgc 365
              |||||||||||||||||||||
Sbjct: 133926 aacctctattcattttgttgc 133906



to top

>gb|AC154557.2| Mus musculus BAC clone RP23-425M9 from 17, complete sequence
          Length = 186378

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 368    tgactggaataaagaacctgctgtg 392
              ||||||||||||||| |||||||||
Sbjct: 139699 tgactggaataaagaccctgctgtg 139723



to top

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 96      ctccgccatcttcttcttggccggc 120
               |||||||||||| ||||||||||||
Sbjct: 2090925 ctccgccatcttgttcttggccggc 2090949



to top

>emb|CT030155.10| Mouse DNA sequence from clone RP23-425N11 on chromosome 17, complete
              sequence
          Length = 189713

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 368    tgactggaataaagaacctgctgtg 392
              ||||||||||||||| |||||||||
Sbjct: 173586 tgactggaataaagaccctgctgtg 173610



to top

>ref|XM_417421.2| PREDICTED: Gallus gallus hypothetical LOC419247 (LOC419247), mRNA
          Length = 4071

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 257  ctttgatcaaccccatcctg 276
            ||||||||||||||||||||
Sbjct: 3188 ctttgatcaaccccatcctg 3207



to top

>ref|XM_366303.1| Magnaporthe grisea 70-15 hypothetical protein (MG10522.4) partial
            mRNA
          Length = 1203

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  tcttcttcttggccggcttc 123
            ||||||||||||||||||||
Sbjct: 1084 tcttcttcttggccggcttc 1065



to top

>ref|NM_124911.1| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational
           mechanism / hydrogen-transporting ATPase, rotational
           mechanism (AT5G55290) mRNA, complete cds
          Length = 213

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 tgttggatgatgtgggcaat 233
           ||||||||||||||||||||
Sbjct: 136 tgttggatgatgtgggcaat 155



to top

>gb|AE012530.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 438
            of 460 of the complete genome
          Length = 9597

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   gcgatggggttcctggtgac 95
            ||||||||||||||||||||
Sbjct: 4586 gcgatggggttcctggtgac 4567



to top

>gb|AY057717.1| Arabidopsis thaliana AT5g55290/MCO15_24 mRNA, complete cds
          Length = 213

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 tgttggatgatgtgggcaat 233
           ||||||||||||||||||||
Sbjct: 136 tgttggatgatgtgggcaat 155



to top

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 76      gcgatggggttcctggtgac 95
               ||||||||||||||||||||
Sbjct: 4916298 gcgatggggttcctggtgac 4916279



to top

>gb|AF372884.1|AF372884 Arabidopsis thaliana AT5g55290/MCO15_24 mRNA, complete cds
          Length = 559

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 tgttggatgatgtgggcaat 233
           ||||||||||||||||||||
Sbjct: 317 tgttggatgatgtgggcaat 336



to top

>gb|AC110078.2| Homo sapiens BAC clone RP11-358N5 from 2, complete sequence
          Length = 196117

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   ctttgatcaaccccatcctg 276
             ||||||||||||||||||||
Sbjct: 33043 ctttgatcaaccccatcctg 33024



to top

>gb|AC010740.7| Homo sapiens BAC clone RP11-493I5 from 2, complete sequence
          Length = 184455

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   gaacctctattcattttgtt 363
             ||||||||||||||||||||
Sbjct: 90316 gaacctctattcattttgtt 90335



to top

>emb|BX833920.1|CNS0A20W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZC08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 587

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 tgttggatgatgtgggcaat 233
           ||||||||||||||||||||
Sbjct: 214 tgttggatgatgtgggcaat 233



to top

>emb|BX832924.1|CNS0A216 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL22ZG01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 479

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 tgttggatgatgtgggcaat 233
           ||||||||||||||||||||
Sbjct: 217 tgttggatgatgtgggcaat 236


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 61,667,807
Number of extensions: 3204063
Number of successful extensions: 218637
Number of sequences better than 10.0: 44
Number of HSP's gapped: 218635
Number of HSP's successfully gapped: 50
Length of query: 440
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 418
Effective length of database: 18,508,616,841
Effective search space: 7736601839538
Effective search space used: 7736601839538
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)
to top