ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf28j12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Os02g0589700:Os02g0589700 28 1.8
2AY224502:Os06g0252300 27 4.0
3AK111228: 27 4.0
4AK066448:Os06g0252300 27 4.0
5Os08g0153600:Os08g0153600 26 6.7
6AK106742:Os10g0327300 26 8.8

>Os02g0589700:Os02g0589700 |
          Length = 489
 Score = 28.1 bits (61), Expect = 1.8
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
 Frame = +2

Query: 143 LVLTERRNVSC-----VFQSCNFGSGDSDFKRRVLMRV 241
           +V+TERRN S      +  +  FG G   F+RR+++R+
Sbjct: 295 IVVTERRNYSAYDMEDLLAAVGFGDGIEPFRRRMVVRM 332



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>AY224502:Os06g0252300 |
          Length = 1016

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 294 CKI-CTELSCKMCVYRQNQRCR 356
           CK+ C E  C  CV R  QRCR
Sbjct: 365 CKVTCHEGDCPPCVVRVEQRCR 386



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>AK111228: |
          Length = 764

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 38  TSCGSGSNGVLETQTRYHCLR 100
           T C    N +  T TRYHCL+
Sbjct: 566 TLCNDCRNSIPPTNTRYHCLK 586



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>AK066448:Os06g0252300 |
          Length = 847

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 294 CKI-CTELSCKMCVYRQNQRCR 356
           CK+ C E  C  CV R  QRCR
Sbjct: 180 CKVTCHEGDCPPCVVRVEQRCR 201



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>Os08g0153600:Os08g0153600 |
          Length = 613

 Score = 26.2 bits (56), Expect = 6.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 185 SCNFGSGDSDFKRRVLMRVP 244
           SC+F SGD+D  RR+   +P
Sbjct: 88  SCHFASGDADGARRLFASMP 107



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>AK106742:Os10g0327300 |
          Length = 430

 Score = 25.8 bits (55), Expect = 8.8
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -2

Query: 386 YFFFFFLGKNTASLILPVDT---HLTGKFSTDFTVYMLSRFTSSIQPLT 249
           YFF FF GK     + P  T    L    +T  + ++L+ F    Q LT
Sbjct: 238 YFFGFFFGKTPLIKLSPKKTWEGFLGASVTTMLSAFVLANFMGHFQWLT 286


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 11,307,023
Number of extensions: 254106
Number of successful extensions: 518
Number of sequences better than 10.0: 6
Number of HSP's gapped: 518
Number of HSP's successfully gapped: 6
Length of query: 129
Length of database: 15,399,855
Length adjustment: 89
Effective length of query: 40
Effective length of database: 11,836,206
Effective search space: 473448240
Effective search space used: 473448240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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