ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf28j12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os02g30310:12002.t02724:unspliced-genomic ubiquitin-acti... 33 0.002
2LOC_Os02g42630:12002.t03848:unspliced-genomic hypothetical p... 33 0.92
3LOC_Os10g19910:12010.t01490:unspliced-genomic expressed protein 33 1.3
4LOC_Os03g08900:12003.t00746:unspliced-genomic transparent te... 32 2.4
5LOC_Os10g27030:12010.t02110:unspliced-genomic retrotransposo... 27 2.7
6LOC_Os04g33500:12004.t03026:unspliced-genomic protein kinase... 31 3.2
7LOC_Os04g41599:12004.t03718:unspliced-genomic transposon pro... 25 3.8
8LOC_Os06g15810:12006.t01454:unspliced-genomic integral membr... 31 4.5
9LOC_Os06g03120:12006.t00205:unspliced-genomic aspartic prote... 30 6.1
10LOC_Os05g11140:12005.t00946:unspliced-genomic ATP binding pr... 30 6.1
11LOC_Os12g14720:12012.t01332:unspliced-genomic retrotransposo... 30 6.2
12LOC_Os09g39650:12009.t03430:unspliced-genomic ATP binding pr... 30 6.2
13LOC_Os02g10970:12002.t00945:unspliced-genomic peptidyl-proly... 30 6.2
14LOC_Os01g70060:12001.t06308:unspliced-genomic expressed protein 30 6.2
15LOC_Os09g07300:12009.t003571:unspliced-genomic BIG, putative... 30 8.4
16LOC_Os03g56580:12003.t04917:unspliced-genomic NAC domain-con... 30 8.4
17LOC_Os12g36560:12012.t03337:unspliced-genomic retrotransposo... 30 8.5
18LOC_Os06g34950:12006.t03192:unspliced-genomic hypothetical p... 30 8.5
19LOC_Os03g53280:12003.t04650:unspliced-genomic beige/BEACH do... 30 8.5

>LOC_Os02g30310:12002.t02724:unspliced-genomic ubiquitin-activating enzyme E1 domain-containing protein 1, putative,|
             expressed
          Length = 10798
 Score = 32.7 bits (65), Expect(2) = 0.002
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1 / +2

                                                        
Query: 34    LDLVRIRLKWCVGNPNQIPLFASLPTELAISVDVASACSNRTE 162
             ++LV  + +  V  P  + +    PTEL ISVD+AS  +   E
Sbjct: 10418 INLVSTKAQHWVRKPTWVLMLVFTPTELPISVDIASVHTKEVE 10546



 Score = 26.7 bits (52), Expect(2) = 0.002
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +3 / +3

                         
Query: 3     LQRQLDALNSS* 38
             LQRQLDALNSS*
Sbjct: 10356 LQRQLDALNSS* 10391



 Score = 30.9 bits (61), Expect = 4.5
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -1 / -1

                                       
Query: 144   SRCYID*NR*LCRKGRKQWYLVWVSN 67
             +R YI *N *LCR   K  Y  W SN
Sbjct: 10528 NRSYIH*NG*LCRSKHKHQYPGWFSN 10451



to top

>LOC_Os02g42630:12002.t03848:unspliced-genomic hypothetical protein|
          Length = 439

 Score = 33.1 bits (66), Expect = 0.92
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1 / +1

                                             
Query: 52  RLKWCVGNPNQIPLFASLPTELAISVDVASACSN 153
           RL+WCVG+   + + A+  T L    D  S CS+
Sbjct: 193 RLRWCVGSQGSVRIAATGATPLRRQGDTISGCSD 294



to top

>LOC_Os10g19910:12010.t01490:unspliced-genomic expressed protein|
          Length = 2024

 Score = 32.7 bits (65), Expect = 1.3
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1 / +2

                                                          
Query: 387 VFFFFFSW*KYGIFDFACRHTSYRKVQYRFYSIYAVTVHKFYSTSDY 247
           V FF+F +  YG F  +C H    ++Q + +  + V++    S S++
Sbjct: 557 VLFFYFPFHAYGFFPCSCFHVHIFRMQTKVHPNFIVSIDLQVSRSEH 697



to top

>LOC_Os03g08900:12003.t00746:unspliced-genomic transparent testa 12 protein, putative, expressed|
          Length = 9295

 Score = 31.8 bits (63), Expect = 2.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1 / +3

                                                  
Query: 324  SYRKVQYRFYSIYAVTVHKFYSTSDYGGTLINTRLLKS 211
            SY  + Y    I A++   FY  SD+  +LIN R+ +S
Sbjct: 5535 SYSNIPYFLIRISAISKLYFYMESDFSFSLINMRISRS 5648



to top

>LOC_Os10g27030:12010.t02110:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 2887

 Score = 27.2 bits (53), Expect(2) = 2.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1 / +1

                                         
Query: 360 KYGIFDFACRHTSYRKVQYRFYSIYAVTVH 271
           +  IFD+ACR +S+      F +I+  TV+
Sbjct: 319 RIAIFDWACRTSSFEPSAELFGAIFFATVN 408



 Score = 24.4 bits (47), Expect(2) = 2.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2 / +1

                         
Query: 89   GIWFGFPTHHLSR 51
            G WFGF  HH  R
Sbjct: 2551 GRWFGFGLHHCVR 2589



to top

>LOC_Os04g33500:12004.t03026:unspliced-genomic protein kinase KIPK, putative, expressed|
          Length = 3802

 Score = 31.3 bits (62), Expect = 3.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2 / -3

                                     
Query: 116  NSVGRDANNGIWFGFPTHHLSRIRT 42
            NS G   NN IW G PT   +++RT
Sbjct: 1004 NSCGLTTNNRIWGGHPTADAAQVRT 930



to top

>LOC_Os04g41599:12004.t03718:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class|
          Length = 10052

 Score = 24.9 bits (48), Expect(2) = 3.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3 / -3

                          
Query: 294  CKICTELSCKMCVY 335
            C  C  LSC+MC +
Sbjct: 2796 CSSCLGLSCRMCTH 2755



 Score = 23.1 bits (44), Expect(2) = 3.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3 / -2

                                  
Query: 243  RHSQRLNRTCEP*QHIYCKICT 308
            RH QR   +C     + C++CT
Sbjct: 2968 RHEQRCFGSCSSCLGLSCRMCT 2903



to top

>LOC_Os06g15810:12006.t01454:unspliced-genomic integral membrane protein DUF6 containing protein, expressed|
          Length = 2220

 Score = 30.9 bits (61), Expect = 4.5
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1 / +1

                        
Query: 387  VFFFFFSW*KYG 352
            VFFFFFSW* YG
Sbjct: 1237 VFFFFFSW*LYG 1272



to top

>LOC_Os06g03120:12006.t00205:unspliced-genomic aspartic proteinase nepenthesin-2 precursor, putative, expressed|
          Length = 1893

 Score = 30.4 bits (60), Expect = 6.1
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3 / +1

                           
Query: 288  IYCKICTELSCKMCV 332
            ++CK+C +L CK+C+
Sbjct: 1813 LWCKLCIKLRCKLCI 1857



to top

>LOC_Os05g11140:12005.t00946:unspliced-genomic ATP binding protein, putative, expressed|
          Length = 9881

 Score = 30.4 bits (60), Expect = 6.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3 / +3

                                                 
Query: 316  ESSVQILQYICCHGSQVLFNL*LWRNSHQHPPLKI*I 206
            E +  +  ++  H SQVL  L*L  NS  H   K *I
Sbjct: 6057 EGTALLTNFLVSHNSQVLIGL*LCPNSKSHVNAKF*I 6167



to top

>LOC_Os12g14720:12012.t01332:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 8566

 Score = 30.4 bits (60), Expect = 6.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1 / -2

                                          
Query: 342  FACRHTSYRKVQYRFYSIYAVTVHKFYSTS 253
            F    T  +  QY FYS Y    H+FYS+S
Sbjct: 5247 FVITQT*LKASQYYFYSCYL*KSHRFYSSS 5158



to top

>LOC_Os09g39650:12009.t03430:unspliced-genomic ATP binding protein, putative, expressed|
          Length = 4205

 Score = 30.4 bits (60), Expect = 6.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1 / -1

                                
Query: 288 YAVTVHKFYSTSDYGGTLINT 226
           Y + VH F STS +GG  INT
Sbjct: 158 YLIVVHHFSSTSLHGGICINT 96



to top

>LOC_Os02g10970:12002.t00945:unspliced-genomic peptidyl-prolyl cis-trans isomerase 1, putative, expressed|
          Length = 8089

 Score = 30.4 bits (60), Expect = 6.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1 / +1

                                         
Query: 387  VFFFFFSW*KYGIFDFACRHTSYRKVQYR 301
            +  FFF +*K+ +    CRH SYR  + R
Sbjct: 7066 ILIFFFHF*KFKLKCIFCRHMSYRGSRQR 7152



to top

>LOC_Os01g70060:12001.t06308:unspliced-genomic expressed protein|
          Length = 13788

 Score = 30.4 bits (60), Expect = 6.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1 / -1

                             
Query: 172  LCFPVMQFWIGRFRF*E 222
            +C  V+ FWIGRFR+ E
Sbjct: 9963 ICRTVLSFWIGRFRYQE 9913



to top

>LOC_Os09g07300:12009.t003571:unspliced-genomic BIG, putative, expressed|
          Length = 17713

 Score = 29.9 bits (59), Expect = 8.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2 / +1

                                      
Query: 125   QSM*HLLVLTERRNVSCVFQSCNFG 199
             Q  *H+LVL++    SC+FQ   FG
Sbjct: 11188 QDF*HILVLSQSYKHSCIFQCSFFG 11262



to top

>LOC_Os03g56580:12003.t04917:unspliced-genomic NAC domain-containing protein 42, putative, expressed|
          Length = 2284

 Score = 29.9 bits (59), Expect = 8.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3 / -2

                               
Query: 48  DPAQMVCWKPKPDTIVCVPS 107
           DP Q  CW P P +I+  P+
Sbjct: 165 DPLQTPCWSPSPRSIIIEPT 106



to top

>LOC_Os12g36560:12012.t03337:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 3226

 Score = 29.9 bits (59), Expect = 8.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1 / +3

                                      
Query: 213  SESPDPKLHDWKTQLTFLRSVRTSRC 136
            S  P P+   W+T  +F R  R SRC
Sbjct: 2457 SRRPRPRRSGWRTTCSFARQRRRSRC 2534



to top

>LOC_Os06g34950:12006.t03192:unspliced-genomic hypothetical protein|
          Length = 1412

 Score = 29.9 bits (59), Expect = 8.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -1 / +3

                                                          
Query: 387 VFFFFFSW*KYGIFDFACRHTSYRKVQYRFYSIYAVTVHKFYSTSDY 247
           V FF+  +  YG F  +C H    ++Q + +  + V++    S S++
Sbjct: 372 VLFFYLPFHAYGFFPCSCFHVHIFRMQTKVHPKFIVSIDLQVSRSEH 512



to top

>LOC_Os03g53280:12003.t04650:unspliced-genomic beige/BEACH domain containing protein, expressed|
          Length = 17474

 Score = 29.9 bits (59), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1 / -2

                                    
Query: 93   QWYLVWVSNTPFEPDPHEVKMSLV 22
            +WYL     T F P+P EV++ L+
Sbjct: 1993 RWYLFRAGRTEFFPEPPEVQLQLI 1922


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 165,992,753
Number of extensions: 2746240
Number of successful extensions: 9226
Number of sequences better than 10.0: 19
Length of query: 129
Length of database: 55,613,886
Length adjustment: 47
Effective length of query: 82
Effective length of database: 52,968,820
Effective search space: 4343443240
Effective search space used: 4343443240
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
to top