ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf28j12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 42 1.4
2emb|AL162713.19| Human DNA sequence from clone RP11-168P13 on ch... 42 1.4
3emb|AL935310.8| Zebrafish DNA sequence from clone CH211-235I6 in... 42 1.4
4emb|BX000452.7| Zebrafish DNA sequence from clone DKEY-12J12 in ... 42 1.4
5gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.6
6gb|AC130539.3| Mus musculus BAC clone RP23-455J15 from chromosom... 40 5.6
7gb|AC096758.3| Homo sapiens BAC clone RP11-560J23 from 2, comple... 40 5.6
8dbj|AB003928.1| Microbispora rosea subsp. aerata pyk gene for py... 40 5.6
9gb|AC138313.4| Mus musculus BAC clone RP23-243P9 from 9, complet... 40 5.6

>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727
 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 344     tcaaagatgccgtatttttac 364
               |||||||||||||||||||||
Sbjct: 6171123 tcaaagatgccgtatttttac 6171143



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>emb|AL162713.19| Human DNA sequence from clone RP11-168P13 on chromosome 13 Contains parts
              of 2 novel genes and a CpG island, complete sequence
          Length = 157175

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 72     aaacccaaaccagataccatt 92
              |||||||||||||||||||||
Sbjct: 127756 aaacccaaaccagataccatt 127776



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>emb|AL935310.8| Zebrafish DNA sequence from clone CH211-235I6 in linkage group 14,
             complete sequence
          Length = 101904

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 160   gagaaatgttagctgtgtttt 180
             |||||||||||||||||||||
Sbjct: 90611 gagaaatgttagctgtgtttt 90631



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>emb|BX000452.7| Zebrafish DNA sequence from clone DKEY-12J12 in linkage group 14,
              complete sequence
          Length = 220420

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 160    gagaaatgttagctgtgtttt 180
              |||||||||||||||||||||
Sbjct: 176355 gagaaatgttagctgtgtttt 176335



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 3       ctccagcggcagctcgacgc 22
               ||||||||||||||||||||
Sbjct: 4437016 ctccagcggcagctcgacgc 4436997



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>gb|AC130539.3| Mus musculus BAC clone RP23-455J15 from chromosome 9, complete sequence
          Length = 179156

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     aacccaaaccagataccatt 92
              ||||||||||||||||||||
Sbjct: 111865 aacccaaaccagataccatt 111846



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>gb|AC096758.3| Homo sapiens BAC clone RP11-560J23 from 2, complete sequence
          Length = 88892

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 297   aaaatctgtactgaactttcctgt 320
             ||||||||||||||| ||||||||
Sbjct: 24929 aaaatctgtactgaaatttcctgt 24952



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>dbj|AB003928.1| Microbispora rosea subsp. aerata pyk gene for pyruvate kinase,
           complete cds
          Length = 1620

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   ctccagcggcagctcgacgc 22
           ||||||||||||||||||||
Sbjct: 790 ctccagcggcagctcgacgc 771



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>gb|AC138313.4| Mus musculus BAC clone RP23-243P9 from 9, complete sequence
          Length = 195883

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     aacccaaaccagataccatt 92
              ||||||||||||||||||||
Sbjct: 187306 aacccaaaccagataccatt 187325


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 64,030,956
Number of extensions: 3015448
Number of successful extensions: 215142
Number of sequences better than 10.0: 9
Number of HSP's gapped: 215142
Number of HSP's successfully gapped: 9
Length of query: 387
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 365
Effective length of database: 18,508,616,841
Effective search space: 6755645146965
Effective search space used: 6755645146965
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)
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