>LOC_Os03g20100:12003.t01771:unspliced-genomic 30S ribosomal protein S1, chloroplast precursor, putative, expressed|
          Length = 4309
 Score =  218 bits (470), Expect(7) = e-117
 Identities = 95/104 (91%), Positives = 98/104 (94%)
 Frame = +3 / +1

                                                                        
Query: 225  FVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTV 404
            + P   +  K+TAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTV
Sbjct: 3151 YKPLLDLDQKSTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTV 3330

                                                        
Query: 405  ESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV 536
            ESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV
Sbjct: 3331 ESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV 3462



 Score = 89.0 bits (188), Expect(7) = e-117
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +3 / +3

                                                 
Query: 534  VMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEK 644
            VMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEK
Sbjct: 3546 VMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEK 3656



 Score = 88.1 bits (186), Expect(7) = e-117
 Identities = 36/50 (72%), Positives = 38/50 (76%)
 Frame = +3 / +1

                                                              
Query: 3    HLEEAGIRPGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAED 152
            H+EEAGIR GLVE+FMIIDENP DET          DLAWERCRQLQAED
Sbjct: 2140 HIEEAGIRAGLVEEFMIIDENPGDETLILSLQAIQQDLAWERCRQLQAED 2289



 Score = 63.8 bits (133), Expect(7) = e-117
 Identities = 28/31 (90%), Positives = 30/31 (96%)
 Frame = +3 / +2

                                           
Query: 633  VFEKADEMAQIFRQRIAQAEAMARADMLRFQ 725
            V ++ADEMAQIFRQRIAQAEAMARADMLRFQ
Sbjct: 3728 VSKQADEMAQIFRQRIAQAEAMARADMLRFQ 3820



 Score = 42.8 bits (87), Expect(7) = e-117
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +2 / +3

                               
Query: 731  EWIVSQLRGHLRAIVIRHT 787
            EWI SQ RGHLRAI+IRHT
Sbjct: 3942 EWINSQFRGHLRAIIIRHT 3998



 Score = 26.3 bits (51), Expect(7) = e-117
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +3 / +1

                              
Query: 795  EGQSTDE*VQ*EECI*FQ 848
            EGQ+TDE*+Q*E+ +* +
Sbjct: 4015 EGQTTDE*LQ*EDYV*VE 4068



 Score = 26.3 bits (51), Expect(7) = e-117
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1 / +2

                         
Query: 904  YSDNSPSSTCACI 942
            YS++ PSS CACI
Sbjct: 4133 YSNHFPSSICACI 4171



 Score =  166 bits (357), Expect(8) = e-113
 Identities = 71/101 (70%), Positives = 83/101 (82%)
 Frame = -1 / -2

                                                                        
Query: 533  LESIPWLKNCRDICNTVMTNLADMQKSIDSTDIDEGTIRF*AFNSSQNN*TNTKLGLAVG 354
            LE I WL+NCRD+ NTVMTNLADM+K+IDST++D+ TIRF A +SSQ+N*TNTKL L + 
Sbjct: 3459 LERISWLQNCRDVRNTVMTNLADMEKAIDSTNVDKCTIRFQALDSSQDN*TNTKLSLTIC 3280

                                                     
Query: 353  HCLAITEDKPTLLLIDLHKLQR*LFVKQLFSSCFR*HL*KW 231
            HCLA+TEDKP L LIDLHKLQR* FVKQ FSS F   + KW
Sbjct: 3279 HCLAVTEDKPALFLIDLHKLQR*FFVKQFFSS*FLIKVKKW 3157



 Score = 95.0 bits (201), Expect(8) = e-113
 Identities = 42/49 (85%), Positives = 44/49 (89%)
 Frame = -2 / -3

                                                             
Query: 148  SA*SCLHLSQARSC*IDCKLRIKVSSFGFSSIIMNCSTKPGRMPASSKW 2
            SA*SCLHLSQARSC*I CKL+IKVSS GFSSIIMN STKP R+PASS W
Sbjct: 2285 SA*SCLHLSQARSC*IACKLKIKVSSPGFSSIIMNSSTKPARIPASSIW 2139



 Score = 85.4 bits (180), Expect(8) = e-113
 Identities = 36/37 (97%), Positives = 36/37 (97%)
 Frame = -2 / -1

                                                 
Query: 643  FSKTSFGLRIMSPGVGSSFFVERLTRPLSRSWLRIIT 533
            FSKTSFGLRIMSPGVGSSF VERLTRPLSRSWLRIIT
Sbjct: 3655 FSKTSFGLRIMSPGVGSSFLVERLTRPLSRSWLRIIT 3545



 Score = 62.0 bits (129), Expect(8) = e-113
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = -1 / -1

                                          
Query: 731  LWLES*HVGTSHCLCLSYSLPEYLRHLISL 642
            L LES*H+ TSHCLCLSY LPEYL HLISL
Sbjct: 3826 LRLES*HISTSHCLCLSYPLPEYLSHLISL 3737



 Score = 59.3 bits (123), Expect(8) = e-113
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = -1 / -1

                                       
Query: 251  R*HL*KWNKCLKALHESHHTSFVTTNY 171
            R*HL*KWNK LKALH+S+HTSFV+TNY
Sbjct: 2959 R*HL*KWNKSLKALHKSYHTSFVSTNY 2879



 Score = 40.5 bits (82), Expect(8) = e-113
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = -3 / -1

                                
Query: 786  VCLMTMALRCPLS*ETIHSL 727
            VCLM MALRCPL+*E IHS+
Sbjct: 3997 VCLMIMALRCPLN*ELIHSV 3938



 Score = 28.6 bits (56), Expect(8) = e-113
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1 / -2

                            
Query: 842  SDAFFLLHLFVRGLPF 795
            SD  FLL LF+ GLPF
Sbjct: 4062 SDVIFLLKLFICGLPF 4015



 Score = 24.4 bits (47), Expect(8) = e-113
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1 / -2

                           
Query: 944  MIQAQVDDGELSEYD 900
            +IQAQ++DG+  EY+
Sbjct: 4173 LIQAQIEDGKWLEYN 4129



 Score =  181 bits (390), Expect(7) = 1e-93
 Identities = 70/95 (73%), Positives = 79/95 (83%)
 Frame = +2 / +3

                                                                        
Query: 251  ENNC*RVA*QRATSEVCGGR*GAR*ACPQ*SQGNGRQPSPAWYWFSCFGNC*KPKTLWCL 430
            E NC*R A*QR TSEVCGGR*G R ACPQ* QGNGR  S AWYWFSC GNC +P+TLWC+
Sbjct: 3177 EINC*RTA*QRTTSEVCGGR*GTRQACPQ*PQGNGR*SSSAWYWFSCLGNCREPETLWCI 3356

                                               
Query: 431  HRYRWNQWTSACQPN*S*PCCRYLDSSSTRGYSQG 535
            +R+ WNQW S CQP+*S*PCC +LDSS+TR Y+QG
Sbjct: 3357 YRHWWNQWPSPCQPD*S*PCCGHLDSSATRRYAQG 3461



 Score = 85.4 bits (180), Expect(7) = 1e-93
 Identities = 39/57 (68%), Positives = 40/57 (70%)
 Frame = +2 / +3

                                                                     
Query: 2    PFRGGRHPAGFSGAVHDN**EPK**NFDSELTINSARPCLGKVQAASGRGCCYHG*S 172
            P+R GR P  F   VHD * E  **NFD ELT NSARPCLGKVQ AS R CC HG*S
Sbjct: 2139 PYRRGRDPCRFGRRVHDY*RESW**NFDFELTSNSARPCLGKVQTASSRRCCCHG*S 2309



 Score = 57.9 bits (120), Expect(7) = 1e-93
 Identities = 25/30 (83%), Positives = 25/30 (83%)
 Frame = +1 / +3

                                          
Query: 643  RLMRWRRYSGRE*LKQRQWLVPTC*DSSQR 732
            RLMRW RYSGR *LKQRQWLV  C*DSS R
Sbjct: 3738 RLMRWLRYSGRG*LKQRQWLVLIC*DSSLR 3827



 Score = 50.1 bits (103), Expect(7) = 1e-93
 Identities = 25/38 (65%), Positives = 28/38 (73%)
 Frame = +2 / +2

                                                  
Query: 533  GYDSKP*S*KGPG*PFYKEAGANAW*HDS*PEAGF*EG 646
            GYDSKP* *K P * FY +A A+ W*HDS  +A F*EG
Sbjct: 3545 GYDSKP*P*KRPC*SFY*KA*ADTW*HDSQSKACF*EG 3658



 Score = 38.6 bits (78), Expect(7) = 1e-93
 Identities = 17/22 (77%), Positives = 17/22 (77%)
 Frame = +1 / +2

                                  
Query: 721  SSQRVDCLSAQRAS*GHCHQTH 786
            S  RVD LS QRAS*GH HQTH
Sbjct: 3932 SLHRVD*LSVQRAS*GHYHQTH 3997



 Score = 37.7 bits (76), Expect(7) = 1e-93
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +3 / +2

                             
Query: 201  ALVEGLKAFVPFSQVSS 251
            ALVEGLK FVPFSQVSS
Sbjct: 2909 ALVEGLKGFVPFSQVSS 2959



 Score = 24.9 bits (48), Expect(7) = 1e-93
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1 / +2

                                     
Query: 775  HQTHQRMKGNPRTNRCNRKNASDSK 849
            H    R KG P+ N  NRK  S+ K
Sbjct: 3995 HLLRAREKGKPQMNSFNRKITSE*K 4069



 Score =  138 bits (295), Expect(5) = 2e-74
 Identities = 63/73 (86%), Positives = 66/73 (90%)
 Frame = -2 / -3

                                                                        
Query: 535  TLRVSPG*RTVEISATRS*LIWLTCRSPLIPPISMKAP*GFRLSTVPKTTEPIPSWAWLS 356
            TL VSPG RTVE+SATRS*LIWLT R PLIPP+S+ AP*GFRLSTVPKTTEPIPS A LS
Sbjct: 3461 TLSVSPGCRTVEMSATRS*LIWLTWRRPLIPPMSINAP*GFRLSTVPKTTEPIPS*A*LS 3282

                         
Query: 355  AIALRLLRTSLPC 317
            AIALRLLRTSLPC
Sbjct: 3281 AIALRLLRTSLPC 3243



 Score = 91.8 bits (194), Expect(5) = 2e-74
 Identities = 40/57 (70%), Positives = 44/57 (77%)
 Frame = -1 / -2

                                                                     
Query: 173  YFTRDNNILCLKLPAPFPGKVLLN*L*AQNQSFIIWVLINYHELLH*TRPDACLL*M 3
            +FTRDNNI CLKL APFPGKVLLN L*AQNQSFI  +L+N HEL + T  D CL  M
Sbjct: 2310 HFTRDNNIFCLKLSAPFPGKVLLNCL*AQNQSFITRILVNNHELFYQTCTDPCLFYM 2140



 Score = 57.9 bits (120), Expect(5) = 2e-74
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = -1 / -3

                                                  
Query: 644  LLKNQLRVTNHVTRRWLQLLCRKANPAPFTIMA*NHNL 531
            LLKN+L + NHVTR  L+L  RK N A FT+MA*NHNL
Sbjct: 3656 LLKNKLWIANHVTRCRLKLFSRKTNTASFTVMA*NHNL 3543



 Score = 49.6 bits (102), Expect(5) = 2e-74
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = -3 / -3

                                  
Query: 249  MTLVKMEQMP*GPPREPPHLLC 184
            MTLVKMEQ+P*GPP+E PHLLC
Sbjct: 2957 MTLVKMEQIP*GPPQELPHLLC 2892



 Score = 34.1 bits (68), Expect(5) = 2e-74
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -2 / -3

                          
Query: 772  NGPKMPSELRDNPL 731
            NGPKMPSELR NPL
Sbjct: 3983 NGPKMPSELRVNPL 3942



 Score =  151 bits (324), Expect(4) = 1e-70
 Identities = 72/101 (71%), Positives = 78/101 (77%)
 Frame = +1 / +2

                                                                        
Query: 232  HFHKCHRKQLLKSCLTKSYL*SLWRSMRSKVGLSSVIARQWPTAKPSLVLVQLFWELLKA 411
            HF    R QLLK+CLTK+YL*SLWRSMR+K GLSSV ARQW   K SLVLVQL WEL +A
Sbjct: 3158 HFLTLIRNQLLKNCLTKNYL*SLWRSMRNKAGLSSVTARQWQIVKLSLVLVQLSWELSRA 3337

                                                     
Query: 412  *NLMVPSSISVESMDFCMSAKLVMTVLQISRQFFNQGILSR 534
            *NLMV  S  VESM F MSA+LVMTVL+ SRQF NQ I SR
Sbjct: 3338 *NLMVHLSTLVESMAFSMSARLVMTVLRTSRQFCNQEIRSR 3460



 Score = 83.5 bits (176), Expect(4) = 1e-70
 Identities = 43/64 (67%), Positives = 50/64 (78%)
 Frame = +1 / +2

                                                                        
Query: 1    TI*RRQASGRV*WSSS**LMRTQMMKL*F*AYNQFSKTLPGKGAGSFRQRMLLSRVK*LV 180
            TI*+RQ S +V   SS* L R  +MKL*F*AY QFSKTLPGKGA SF+Q+MLLSRVK*+ 
Sbjct: 2138 TI*KRQGSVQVW*KSS*LLTRILVMKL*F*AYKQFSKTLPGKGADSFKQKMLLSRVK*VK 2317

                
Query: 181  VTKE 192
            +  E
Sbjct: 2318 ILAE 2329



 Score = 56.1 bits (116), Expect(4) = 1e-70
 Identities = 24/28 (85%), Positives = 27/28 (96%)
 Frame = +2 / +1

                                        
Query: 644  G**DGADIQAENSSSRGNGSCRHVKIPA 727
            G**DG+DIQAE+SSSRGNGSC +VKIPA
Sbjct: 3739 G**DGSDIQAEDSSSRGNGSC*YVKIPA 3822



 Score = 46.9 bits (96), Expect(4) = 1e-70
 Identities = 25/38 (65%), Positives = 28/38 (73%)
 Frame = +1 / +1

                                                  
Query: 532  RL*F*AMIVKGAGLAFLQRSWSQRLVT*FVTRSWFLRR 645
            RL*F*AM VK A L FL +S S+ LVT*F  +S FLRR
Sbjct: 3544 RL*F*AMTVKEAVLVFLLKSLSRHLVT*FAIQSLFLRR 3657



 Score =  102 bits (217), Expect(6) = 3e-55
 Identities = 43/57 (75%), Positives = 45/57 (78%)
 Frame = -3 / -1

                                                                     
Query: 420  KVLGFQQFPKQLNQYQAGLGCRPLPCDY*GQAYLAPHRPPQTSEVALCQATLQQLFS 250
            KV G +QFP+QLNQYQA L   PLPC Y*GQA L PHRPPQTSEV LCQA LQQL S
Sbjct: 3346 KVSGSRQFPRQLNQYQAELDYLPLPCGY*GQACLVPHRPPQTSEVVLCQAVLQQLIS 3176



 Score = 68.0 bits (142), Expect(6) = 3e-55
 Identities = 32/47 (68%), Positives = 34/47 (72%)
 Frame = -3 / -1

                                                           
Query: 141  EAACTFPRQGLAELIVSSESKFHHLGSHQLS*TAPLNPAGCLPPLNG 1
            EA CTFPRQGLAEL+VSS+SKFHH  S Q S*T   N  G LP L G
Sbjct: 2278 EAVCTFPRQGLAELLVSSKSKFHHQDSRQ*S*TLLPNLHGSLPLLYG 2138



 Score = 57.4 bits (119), Expect(6) = 3e-55
 Identities = 26/40 (65%), Positives = 29/40 (72%)
 Frame = -3 / -3

                                                    
Query: 726  AGILTCRHEPLPLLELFSA*ISAPSHQPSQKPASGYESCH 607
            AGILT +HEPLPLLEL SA*IS PSHQP  +    Y S +
Sbjct: 3821 AGILTYQHEPLPLLELSSA*ISEPSHQPVLRQRKQYVSLY 3702



 Score = 40.9 bits (83), Expect(6) = 3e-55
 Identities = 19/26 (73%), Positives = 19/26 (73%)
 Frame = -3 / -1

                                      
Query: 534  P*EYPLVEELSRYLQHGHD*FG*HAE 457
            P* Y LV ELSR  QHGHD* G*H E
Sbjct: 3460 P*AYLLVAELSRCPQHGHD*SG*HGE 3383



 Score = 29.5 bits (58), Expect(6) = 3e-55
 Identities = 15/19 (78%), Positives = 15/19 (78%)
 Frame = -1 / -2

                               
Query: 785  CV**QWP*DAL*AERQSTL 729
            CV** WP*DAL* E  STL
Sbjct: 3996 CV***WP*DAL*TES*STL 3940



 Score = 27.6 bits (54), Expect(6) = 3e-55
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -2 / -2

                     
Query: 250  DDTCENGTN 224
            DDTCENGTN
Sbjct: 2958 DDTCENGTN 2932



 Score = 60.6 bits (126), Expect = 2e-08
 Identities = 26/41 (63%), Positives = 29/41 (70%)
 Frame = +1 / +3

                                                     
Query: 169  K*LVVTKEVWWLSWRALRHLFHFHKCHRKQLLKSCLTKSYL 291
            +*LV TKEVW L WRALR LFHFHKCHR  L      K++L
Sbjct: 2877 R*LVETKEVW*LLWRALRDLFHFHKCHRLVLNLISYYKTFL 2999



 Score = 51.9 bits (107), Expect = 7e-06
 Identities = 26/41 (63%), Positives = 27/41 (65%)
 Frame = -3 / -2

                                                     
Query: 654  SHQPSQKPASGYESCHQALAPASL*KG*PGPFHDHGLES*P 532
            S+ PSQK A   ESCHQ  A A  *K * G FH HGLES*P
Sbjct: 3666 SNLPSQKQALDCESCHQVSAQAF**KD*HGLFHGHGLES*P 3544

>LOC_Os12g35630:12012.t03251:unspliced-genomic elongation factor TS family protein, expressed|
          Length = 6247

 Score = 42.3 bits (86), Expect(2) = 3e-07
 Identities = 16/45 (35%), Positives = 30/45 (66%)
 Frame = +3 / +2

                                                         
Query: 453  GLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTK 587
            GL+H+S++S   V DIS++   G  + V ++  ++E GR+SL+ +
Sbjct: 1493 GLVHISRVSDGFVKDISSLFTVGQEVSVRLVEANKETGRISLTMR 1627



 Score = 32.2 bits (64), Expect(2) = 3e-07
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3 / +2

                                 
Query: 381  GSVVLGTVESLKPYGAFIDIG 443
            G+   G V S+KP+G F+DIG
Sbjct: 1418 GASFTGKVRSIKPFGVFVDIG 1480

>LOC_Os03g62780:12003.t05505:unspliced-genomic RNA binding S1, putative, expressed|
          Length = 3356

 Score = 42.8 bits (87), Expect = 0.004
 Identities = 15/36 (41%), Positives = 26/36 (72%)
 Frame = +3 / +3

                                                
Query: 447  INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD 554
            + GL+H+S++S D V D+   L  GDT+KV++++ D
Sbjct: 1353 LTGLVHISEVSWDLVQDVRDFLNEGDTVKVIVVNID 1460

>LOC_Os10g16880:12010.t01250:unspliced-genomic retrotransposon protein, putative, unclassified, expressed|
          Length = 4865

 Score = 38.6 bits (78), Expect(2) = 0.015
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +2 / +2

                                                
Query: 347  GNGRQPSPAWYWFSCFGNC*KPKTLWCLHRYRWNQW 454
            G  R PS AW   S F +C  P T WC     W  W
Sbjct: 1472 GGHRSPSRAWRSTSTFTSCPSPATTWCWALSGWPTW 1579



 Score = 25.4 bits (49), Expect(2) = 0.015
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1 / +2

                                      
Query: 913  NSPSSTCACIIVYEA*GAEKRPKRYS 990
            +SPSS CA  I+    G +  P+R S
Sbjct: 2129 SSPSSICARAIIKSGCGLKTSPRRRS 2206

>LOC_Os05g45920:12005.t04080:unspliced-genomic RNA binding protein, putative, expressed|
          Length = 4150

 Score = 32.7 bits (65), Expect(2) = 0.018
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +3 / +3

                                            
Query: 450  NGLLHVSQISHDRVADISTVLQPGDTLKVMIL 545
            +GLLHVS I+  ++  +  VL+ G+ +K +++
Sbjct: 3198 SGLLHVSNITRGQLTSVGDVLKVGEEVKAIVI 3293



 Score = 30.9 bits (61), Expect(2) = 0.018
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3 / +1

                                    
Query: 381  GSVVLGTVESLKPYGAFIDIGGIN 452
            G+++ GTV  L PYGA I IG  N
Sbjct: 2473 GTLLQGTVRKLFPYGAQITIGDTN 2544

>LOC_Os03g27370:12003.t02413:unspliced-genomic phospholipase D alpha 1, putative, expressed|
          Length = 5495

 Score = 27.6 bits (54), Expect(2) = 0.16
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2 / -3

                             
Query: 472  WLTCRSPLIPPISMKAP 422
            W++C   L PP++M AP
Sbjct: 3195 WMSCHGSLGPPLAMDAP 3145



 Score = 27.2 bits (53), Expect(2) = 0.16
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1 / -3

                                           
Query: 686  LSYSLPEYLRHLISLLKNQLRVTNHVTRRWL 594
            LS  LP  LRH  S L +  +     TR+W+
Sbjct: 3282 LSLPLPACLRHRCSKLSSTSQAAGPSTRQWM 3190

>LOC_Os01g40640:12001.t03588:unspliced-genomic RNA binding protein, putative, expressed|
          Length = 3235

 Score = 35.9 bits (72), Expect = 0.49
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +3 / +3

                                            
Query: 450  NGLLHVSQISHDRVADISTVLQPGDTLKVMIL 545
            +GLLH+S IS  RV  +S +L+  + +KV+++
Sbjct: 2010 SGLLHISNISRGRVLSVSDILKIDEEVKVLVV 2105

>LOC_Os04g12090:12004.t01033:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass, expressed|
          Length = 2947

 Score = 34.5 bits (69), Expect = 1.3
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = -3 / -1

                                                                       
Query: 807 WIALHPLVCLMTMALRCPLS*ETIHSLAGILTCRHEPLPLLELFSA*ISAPSHQPSQKPA 628
           W+   P VCL+ M  RC   * T +S+ G LT  +  L    L +  I  P   P++   
Sbjct: 265 WLRKKPGVCLLQMPSRCKRL*LTGNSMRGTLTGLYSSLFSTSLMATLILLPQILPAET*F 86

                 
Query: 627 SGYESC 610
           +G   C
Sbjct: 85  AGCIIC 68

>LOC_Os04g14510:12004.t01270:unspliced-genomic PHD-finger family protein, expressed|
          Length = 8878

 Score = 33.1 bits (66), Expect(2) = 1.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1 / +1

                                                                  
Query: 865  ICL*MHDEDITISYSDNSPSSTCACIIVYEA*GAEKRPKRYSSCIPFVKQKKKK 1026
            ICL  H E +T+  S++ P  T ACI++      ++R    S    +V+++  K
Sbjct: 2659 ICLVYHQEVLTLCQSNSMPQVTYACIVMEPVHFEQERCMAVSCTCQWVEEQSGK 2820



 Score = 24.4 bits (47), Expect(2) = 1.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1 / +1

                               
Query: 766  GHCHQTHQRMKGNPRTNRC 822
            GH HQ  QR + N   N C
Sbjct: 1117 GHLHQVMQRREVNNLVNAC 1173

>LOC_Os12g33090:12012.t03002:unspliced-genomic nucleic acid binding protein, putative, expressed|
          Length = 1915

 Score = 28.6 bits (56), Expect(2) = 1.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3 / -1

                                        
Query: 735  HSLAGILTCRHEPLPLLELFSA*ISAPS 652
            H L  +  C+  PLP+    S+ +SAPS
Sbjct: 1774 HGLCSVPRCQWNPLPMSSSSSSPVSAPS 1691



 Score = 26.7 bits (52), Expect(2) = 1.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2 / -3

                              
Query: 373  SWAWLSAIALRLLRTSLP 320
            SW WLS +ALR+   + P
Sbjct: 1346 SWNWLSTVALRVGENAAP 1293

>LOC_Os02g40460:12002.t03682:unspliced-genomic 3-5-exoribonuclease/ RNA binding protein, putative, expressed|
          Length = 3538

 Score = 33.1 bits (66), Expect = 3.3
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3 / +3

                             
Query: 441  GGINGLLHVSQISHDRV 491
            GG  GLLH+S++SHD+V
Sbjct: 1521 GGQQGLLHISELSHDKV 1571

>LOC_Os02g05600:12002.t00458:unspliced-genomic expressed protein|
          Length = 3083

 Score = 33.1 bits (66), Expect = 3.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2 / +1

                                               
Query: 622  LRIMSPGVGSSFFVERLTRPLSRSWLRIITLRVSP 518
            L+IM    G   F ERL  P +R W+ + T  +SP
Sbjct: 1510 LQIMDHCNGLLLFFERLANPATRQWMHLPTFPMSP 1614

>LOC_Os05g02560:12005.t00155:unspliced-genomic expressed protein|
          Length = 1904

 Score = 32.7 bits (65), Expect = 4.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1 / -1

                                                  
Query: 739 CLSAQRAS*GHCHQTHQRMKGNPRTNRCNRKNASDSKDS 855
           C  +Q +  G+  Q  +R +  PR  RC R  ASD   S
Sbjct: 788 CAKSQPSLPGNVSQRRRRARRRPRRGRCGRTRASDPLSS 672

>LOC_Os04g45270:12004.t04061:unspliced-genomic pepsin A, putative, expressed|
          Length = 2186

 Score = 32.7 bits (65), Expect = 4.5
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +1 / -2

                                                                       
Query: 643 RLMRWRRYSGRE*LKQRQWLVPTC*DSSQRVDCLSAQRAS*GHCHQTHQRMKGNPRTNRC 822
           R  RWR    RE  ++R+W+V            L + R+S  HC +   R K   R    
Sbjct: 235 RRPRWRAAERREEERRRRWMVAVSLAGRSEERVLVSGRSSPWHCSEEETRSKPKQRKQSW 56

             
Query: 823 NR 828
            R
Sbjct: 55  RR 50

>LOC_Os01g58160:12001.t05214:unspliced-genomic hypothetical protein|
          Length = 2124

 Score = 27.6 bits (54), Expect(2) = 6.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1 / -2

                                             
Query: 968  SAPYASYTMIQAQVDDGELSEYDMVMSSSCIHK 870
            S P  SYT I  QV   +L+E +   S +CI K
Sbjct: 1796 STPQVSYTQIYVQV*RSQLNEGE*FGSITCITK 1698



 Score = 25.8 bits (50), Expect(2) = 6.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3 / -2

                               
Query: 327 AYLAPHRPPQTSEVALCQAT 268
           A LAP RPP  S   LC  T
Sbjct: 536 APLAPSRPPLPSAAPLCDKT 477

>LOC_Os12g40290:12012.t03708:unspliced-genomic hypothetical protein|
          Length = 1107

 Score = 31.8 bits (63), Expect = 8.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2 / -3

                                          
Query: 278 QRATSEVCGGR*GAR*ACPQ*SQGNGRQPSP 370
           +R +S  C G   AR +CP  S G GR+P P
Sbjct: 880 RRTSSPPCRGTALARASCPPPSTGRGRRPPP 788

>LOC_Os11g01670:12011.t00064:unspliced-genomic expressed protein|
          Length = 1217

 Score = 31.8 bits (63), Expect = 8.5
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2 / +1

                                              
Query: 374  WYWFSCFGNC*KPKTLWCLHRYRWNQWTSACQPN 475
            W W +  G+      +W L R RW  W    +P+
Sbjct: 946  WTWMALTGSARTSPQIWRLRRRRWRWWRRGGRPS 1047

>LOC_Os07g17270:12007.t01587:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 6981

 Score = 31.8 bits (63), Expect = 8.5
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +2 / +2

                                                              
Query: 341  SQGNGRQPSPAWYWFSCFGNC*KPKTLWCLHRYRWNQWTSACQPN*S*PC 490
            S G  R  SPA    S   +C  P T+W      W  W  +C  +   PC
Sbjct: 3815 SYGRPRSRSPARRSTSTSTSCPSPDTIWSWALSGW*PWDRSCGTSPPAPC 3964

>LOC_Os06g09420:12006.t00821:unspliced-genomic DNA binding protein, putative, expressed|
          Length = 2615

 Score = 31.8 bits (63), Expect = 8.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1 / +2

                                       
Query: 940  IIVYEA*GAEKRPKRYSSCIPFVKQKK 1020
            + V E    EKR +RYS C+P + Q K
Sbjct: 503  VYVQEFQDFEKRIRRYSECVPLISQSK 583

>LOC_Os01g58610:12001.t05256:unspliced-genomic phosphoglycerate kinase, chloroplast precursor, putative, expressed|
          Length = 2494

 Score = 31.8 bits (63), Expect = 8.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1 / +1

                                           
Query: 1031 VFFFFFCFTKGIQLEYLFGRFSAPYASYTMI 939
            +FFFF   TK  +L+YL G  S P   +  I
Sbjct: 1576 LFFFFIFITKSQELDYLVGAVSNPKRPFAAI 1668

>LOC_Os01g13810:12001.t01240:unspliced-genomic expressed protein|
          Length = 3504

 Score = 31.8 bits (63), Expect = 8.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2 / -2

                                      
Query: 818 GAIGRMHLIPKIPGSSSVCECTMKTLP 898
           G + R HL P +PGS+SVC  T+   P
Sbjct: 935 GVLKRPHLGPCLPGSTSVCMETLVVAP 855


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 420,770,760
Number of extensions: 7134070
Number of successful extensions: 25881
Number of sequences better than 10.0: 21
Length of query: 343
Length of database: 55,613,886
Length adjustment: 50
Effective length of query: 293
Effective length of database: 52,799,986
Effective search space: 15470395898
Effective search space used: 15470395898
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)