Clone Name	FLbaf31j04
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	P29344:RR1_SPIOL 30S ribosomal protein S1, chloroplast precursor...	361	2e-99
2	P46228:RS1_SYNP6 30S ribosomal protein S1 - Synechococcus sp. (s...	205	2e-52
3	P73530:RS1A_SYNY3 30S ribosomal protein S1 homolog A - Synechocy...	197	6e-50
4	O33698:RS1_SYNP7 30S ribosomal protein S1 - Synechococcus sp. (s...	119	3e-26
5	Q1XDE2:RR1_PORYE Chloroplast 30S ribosomal protein S1 - Porphyra...	110	1e-23
6	P50889:RS1_LEULA 40S ribosomal protein S1 - Leuconostoc lactis	108	3e-23
7	P51345:RR1_PORPU Chloroplast 30S ribosomal protein S1 - Porphyra...	106	1e-22
8	P74142:RS1B_SYNY3 30S ribosomal protein S1 homolog B - Synechocy...	104	7e-22
9	P38494:RS1H_BACSU 30S ribosomal protein S1 homolog - Bacillus su...	100	1e-20
10	O06000:RS1H_BACC1 30S ribosomal protein S1 homolog - Bacillus ce...	100	2e-20
11	Q48082:RS1_HAEIN 30S ribosomal protein S1 - Haemophilus influenzae	95	5e-19
12	Q9HZ71:RS1_PSEAE 30S ribosomal protein S1 - Pseudomonas aeruginosa	92	5e-18
13	P14129:RS1_RHIME 30S ribosomal protein S1 - Rhizobium meliloti (...	91	6e-18
14	Q89AJ3:RS1_BUCBP 30S ribosomal protein S1 - Buchnera aphidicola ...	90	1e-17
15	Q92HM4:RS1_RICCN 30S ribosomal protein S1 - Rickettsia conorii	89	3e-17
16	P14128:RS1_PROSP 30S ribosomal protein S1 - Providencia sp.	89	3e-17
17	P0AG70:RS1_SHIFL 30S ribosomal protein S1 - Shigella flexneri	88	5e-17
18	Q68WL4:RS1_RICTY 30S ribosomal protein S1 - Rickettsia typhi	88	5e-17
19	Q9ZD28:RS1_RICPR 30S ribosomal protein S1 - Rickettsia prowazekii	88	5e-17
20	P0AG67:RS1_ECOLI 30S ribosomal protein S1 - Escherichia coli	88	5e-17
21	P0AG68:RS1_ECOL6 30S ribosomal protein S1 - Escherichia coli O6	88	5e-17
22	P0AG69:RS1_ECO57 30S ribosomal protein S1 - Escherichia coli O15...	88	5e-17
23	Q49XT0:RS1_STAS1 30S ribosomal protein S1 - Staphylococcus sapro...	87	1e-16
24	Q1RJH1:RS1_RICBR 30S ribosomal protein S1 - Rickettsia bellii (s...	87	1e-16
25	Q6NDP1:RS1_RHOPA 30S ribosomal protein S1 - Rhodopseudomonas pal...	87	1e-16
26	Q7A5J0:RS1_STAAN 30S ribosomal protein S1 - Staphylococcus aureu...	87	1e-16
27	Q99U14:RS1_STAAM 30S ribosomal protein S1 - Staphylococcus aureu...	87	1e-16
28	Q4ULF1:RS1_RICFE 30S ribosomal protein S1 - Rickettsia felis (Ri...	87	1e-16
29	O06147:RS1_MYCTU 30S ribosomal protein S1 - Mycobacterium tuberc...	87	1e-16
30	Q8NWM8:RS1_STAAW 30S ribosomal protein S1 - Staphylococcus aureu...	86	2e-16
31	Q6G987:RS1_STAAS 30S ribosomal protein S1 - Staphylococcus aureu...	86	2e-16
32	Q6GGT5:RS1_STAAR 30S ribosomal protein S1 - Staphylococcus aureu...	86	2e-16
33	Q5HFU7:RS1_STAAC 30S ribosomal protein S1 - Staphylococcus aureu...	86	2e-16
34	P46836:RS1_MYCLE 30S ribosomal protein S1 - Mycobacterium leprae	86	2e-16
35	Q44653:RS1_BUCAP 30S ribosomal protein S1 - Buchnera aphidicola ...	86	3e-16
36	P57395:RS1_BUCAI 30S ribosomal protein S1 - Buchnera aphidicola ...	86	3e-16
37	Q5HP69:RS1_STAEQ 30S ribosomal protein S1 - Staphylococcus epide...	84	1e-15
38	Q4L6I1:RS1_STAHJ 30S ribosomal protein S1 - Staphylococcus haemo...	83	2e-15
39	Q9Z8M3:RS1_CHLPN 30S ribosomal protein S1 - Chlamydia pneumoniae...	82	5e-15
40	Q97I09:ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl diphosphate reduc...	81	6e-15
41	O84100:RS1_CHLTR 30S ribosomal protein S1 - Chlamydia trachomatis	78	5e-14
42	P38016:RS1_CHLMU 30S ribosomal protein S1 - Chlamydia muridarum	78	5e-14
43	Q895G2:ISPH_CLOTE 4-hydroxy-3-methylbut-2-enyl diphosphate reduc...	70	1e-11
44	Q9ZKF6:RS1_HELPJ 30S ribosomal protein S1 - Helicobacter pylori ...	65	6e-10
45	P80870:GS13_BACSU General stress protein 13 - Bacillus subtilis	64	1e-09
46	P56008:RS1_HELPY 30S ribosomal protein S1 - Helicobacter pylori ...	63	2e-09
47	Q9HV59:PNP_PSEAE Polyribonucleotide nucleotidyltransferase - Pse...	62	5e-09
48	P46837:YHGF_ECOLI Protein yhgF - Escherichia coli	58	6e-08
49	Q8CST1:PNP_STAES Polyribonucleotide nucleotidyltransferase - Sta...	58	7e-08
50	Q5HPR7:PNP_STAEQ Polyribonucleotide nucleotidyltransferase - Sta...	58	7e-08
51	P41121:PNP_PHOLU Polyribonucleotide nucleotidyltransferase - Pho...	58	7e-08
52	P44584:PNP_HAEIN Polyribonucleotide nucleotidyltransferase - Hae...	58	7e-08
53	Q09530:MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependen...	58	7e-08
54	P37560:YABR_BACSU Uncharacterized protein yabR - Bacillus subtilis	57	9e-08
55	Q51152:YHGF_NEIMB Uncharacterized protein NMB0075 - Neisseria me...	57	1e-07
56	P57072:YHGF_NEIMA Uncharacterized protein NMA0194 - Neisseria me...	57	1e-07
57	P05055:PNP_ECOLI Polyribonucleotide nucleotidyltransferase - Esc...	57	2e-07
58	Q8RI52:ISPH_FUSNN 4-hydroxy-3-methylbut-2-enyl diphosphate reduc...	57	2e-07
59	Q8NWY9:PNP_STAAW Polyribonucleotide nucleotidyltransferase - Sta...	56	2e-07
60	Q6G9T9:PNP_STAAS Polyribonucleotide nucleotidyltransferase - Sta...	56	2e-07
61	Q6GHG1:PNP_STAAR Polyribonucleotide nucleotidyltransferase - Sta...	56	2e-07
62	Q7A5X7:PNP_STAAN Polyribonucleotide nucleotidyltransferase - Sta...	56	2e-07
63	Q99UJ8:PNP_STAAM Polyribonucleotide nucleotidyltransferase - Sta...	56	2e-07
64	Q5HGF7:PNP_STAAC Polyribonucleotide nucleotidyltransferase - Sta...	56	2e-07
65	Q2YXP2:PNP_STAAB Polyribonucleotide nucleotidyltransferase - Sta...	56	2e-07
66	Q2FZ20:PNP_STAA8 Polyribonucleotide nucleotidyltransferase - Sta...	56	2e-07
67	Q2FHG4:PNP_STAA3 Polyribonucleotide nucleotidyltransferase - Sta...	56	2e-07
68	Q89AF8:PNP_BUCBP Polyribonucleotide nucleotidyltransferase - Buc...	56	2e-07
69	Q4L5X7:PNP_STAHJ Polyribonucleotide nucleotidyltransferase - Sta...	56	3e-07
70	Q1RIG0:PNP_RICBR Polyribonucleotide nucleotidyltransferase - Ric...	56	3e-07
71	Q49X62:PNP_STAS1 Polyribonucleotide nucleotidyltransferase - Sta...	55	4e-07
72	Q8K9H5:PNP_BUCAP Polyribonucleotide nucleotidyltransferase - Buc...	55	4e-07
73	Q92HV7:PNP_RICCN Polyribonucleotide nucleotidyltransferase - Ric...	54	8e-07
74	P57454:PNP_BUCAI Polyribonucleotide nucleotidyltransferase - Buc...	54	1e-06
75	Q57581:IF2A_METJA Translation initiation factor 2 alpha subunit ...	54	1e-06
76	Q05022:RRP5_YEAST rRNA biogenesis protein RRP5 - Saccharomyces c...	52	4e-06
77	O34275:PNP_YEREN Polyribonucleotide nucleotidyltransferase - Yer...	52	5e-06
78	Q9YF02:IF2A_AERPE Translation initiation factor 2 alpha subunit ...	50	1e-05
79	P71353:Y568_HAEIN Uncharacterized protein HI0568 - Haemophilus i...	49	3e-05
80	Q5X9W0:PNP_STRP6 Polyribonucleotide nucleotidyltransferase - Str...	49	3e-05
81	Q5JE49:IF2A_PYRKO Translation initiation factor 2 alpha subunit ...	49	3e-05
82	Q45388:TEX_BORPE Protein tex - Bordetella pertussis	46	2e-04
83	Q8U1R5:IF2A_PYRFU Translation initiation factor 2 alpha subunit ...	45	5e-04
84	O29723:IF2A_ARCFU Translation initiation factor 2 alpha subunit ...	45	6e-04
85	P39466:RPOE_SULAC DNA-directed RNA polymerase subunit E - Sulfol...	43	0.002
86	Q8TY86:IF2A_METKA Translation initiation factor 2 alpha subunit ...	43	0.002
87	Q497V5:SRBD1_MOUSE S1 RNA-binding domain-containing protein 1 - ...	42	0.004
88	Q9ESX4:NO40_MOUSE Nucleolar protein of 40 kDa - Mus musculus (Mo...	41	0.009
89	Q9NP64:NO40_HUMAN Nucleolar protein of 40 kDa - Homo sapiens (Hu...	40	0.012
90	O27363:IF2A_METTH Translation initiation factor 2 alpha subunit ...	39	0.027
91	Q57840:RPOE1_METJA DNA-directed RNA polymerase subunit E' - Meth...	37	0.13
92	Q14690:RRP5_HUMAN RRP5 protein homolog - Homo sapiens (Human)	33	1.9
93	Q9Y2L1:RRP44_HUMAN Exosome complex exonuclease RRP44 - Homo sapi...	33	1.9
94	Q8K917:RNR_BUCAP Ribonuclease R - Buchnera aphidicola subsp. Sch...	32	4.2
95	Q612F5:PCCA_CAEBR Propionyl-CoA carboxylase alpha chain, mitocho...	31	7.2
96	Q97Z79:IF2A_SULSO Translation initiation factor 2 alpha subunit ...	31	7.2

---

>P29344:RR1_SPIOL 30S ribosomal protein S1, chloroplast precursor - Spinacia oleracea|
           (Spinach)
          Length = 411
 Score =  361 bits (927), Expect = 2e-99
 Identities = 187/241 (77%), Positives = 206/241 (85%)
 Frame = +3

Query: 3   HLEEAGIRPGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXXXXXX 182
           ++EEAGI PG+ E+F+II EN  D++          +LAWERCRQLQAED          
Sbjct: 135 NVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWERCRQLQAEDVVVKGKIVGA 194

Query: 183 XXXXXXALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADS 362
                 ALVEGL+ FVPFSQ+SSK++AEELL+KE+PLKFVEVDEEQ RLV+SNRKAMADS
Sbjct: 195 NKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEEQSRLVMSNRKAMADS 254

Query: 363 QAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
           QAQLGIGSVV GTV+SLKPYGAFIDIGGINGLLHVSQISHDRV+DI+TVLQPGDTLKVMI
Sbjct: 255 QAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMI 314

Query: 543 LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQAEAMARADMLRF 722
           LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKA+EMAQ FRQRIAQAEAMARADMLRF
Sbjct: 315 LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRF 374

Query: 723 Q 725
           Q
Sbjct: 375 Q 375

---

>P46228:RS1_SYNP6 30S ribosomal protein S1 - Synechococcus sp. (strain ATCC 27144 /|
           PCC 6301 / SAUG 1402/1) (Anacystis nidulans)
          Length = 307

 Score =  205 bits (522), Expect = 2e-52
 Identities = 102/226 (45%), Positives = 148/226 (65%), Gaps = 1/226 (0%)
 Frame = +3

Query: 12  EAGIRPGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXXXXXXXXX 191
           E  ++P  + +F I+ +   D              AWER RQLQ ED             
Sbjct: 73  EEVLQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRG 132

Query: 192 XXXALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA- 368
                +EGL+ F+P S +S++   E+L+ +ELPLKF+EVDE++ RLVLS+R+A+ + +  
Sbjct: 133 GALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMN 192

Query: 369 QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILS 548
           +L +G VV+G V  +KPYGAFIDIGG++GLLH+S+ISHD +    +V    D +KVMI+ 
Sbjct: 193 RLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDEVKVMIID 252

Query: 549 HDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQ 686
            D ERGR+SLSTK+LEP PGDM+RNP++V+EKA+EMA  +R+++ Q
Sbjct: 253 LDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQ 298



 Score = 53.1 bits (126), Expect = 2e-06
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIGGING-LLHVSQISHDRVADISTVLQPGDTLKVMILSHDR 557
           G  V+GTV +L+P GA IDIG      L V ++S +RV     VLQP +  +  ILS + 
Sbjct: 32  GDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSINRVESPEEVLQPSEMREFFILSDEN 91

Query: 558 ERGRVSLSTKKLE 596
           E G+++LS +++E
Sbjct: 92  EDGQLTLSIRRIE 104

---

>P73530:RS1A_SYNY3 30S ribosomal protein S1 homolog A - Synechocystis sp. (strain PCC|
           6803)
          Length = 328

 Score =  197 bits (501), Expect = 6e-50
 Identities = 104/231 (45%), Positives = 148/231 (64%), Gaps = 2/231 (0%)
 Frame = +3

Query: 12  EAGIRPGLVEQFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXXXXXXXXX 191
           E  ++P    +F I+ +   D              AWER RQLQAED             
Sbjct: 72  EEVLQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRG 131

Query: 192 XXXALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ 371
                +EGL+ F+P S +S++   E+L+ ++LPLKF+EVDEE+ RLVLS+R+A+ + +  
Sbjct: 132 GALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMN 191

Query: 372 -LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILS 548
            L +  VV+G+V  +KPYGAFIDIGG++GLLH+S+ISHD +    +V    D +KVMI+ 
Sbjct: 192 GLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIID 251

Query: 549 HDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQ-RIAQAEAM 698
            D ERGR+SLSTK+LEP PG M+++  LV E ADEMA+IFRQ R+A+A+ +
Sbjct: 252 LDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQGI 302



 Score = 52.4 bits (124), Expect = 3e-06
 Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDR 557
           G +V GTV S++  GA IDIG      + + ++S +RV D   VLQP +T +  IL+ + 
Sbjct: 31  GDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVDDPEEVLQPNETREFFILTDEN 90

Query: 558 ERGRVSLSTKKLE 596
           E G+++LS +++E
Sbjct: 91  EDGQLTLSIRRIE 103

---

>O33698:RS1_SYNP7 30S ribosomal protein S1 - Synechococcus sp. (strain PCC 7942)|
           (Anacystis nidulans R2)
          Length = 295

 Score =  119 bits (297), Expect = 3e-26
 Identities = 66/214 (30%), Positives = 114/214 (53%), Gaps = 1/214 (0%)
 Frame = +3

Query: 42  QFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXXXXXXXXXXXXALVEGLK 221
           +F++I +   D            + AW R  +LQ                   A +EGL+
Sbjct: 79  EFLVIRDQNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVTADLEGLR 138

Query: 222 AFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA-QLGIGSVVLG 398
           AF+P S ++ K   + L  K L + F+EV+    +LVLS R+A   +   ++ +G ++ G
Sbjct: 139 AFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSERQAARTALVREIEVGQLING 198

Query: 399 TVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSL 578
            V  LKP+G F+D+GG   LL ++QIS   VAD+  + + GD ++ ++++ D  +GR+SL
Sbjct: 199 KVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRISL 258

Query: 579 STKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRI 680
           STK LE  PG+++ N   +   A + A+  R+++
Sbjct: 259 STKVLENHPGEILENVAELQASAADRAERARKQL 292



 Score = 32.3 bits (72), Expect = 3.2
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDR 557
           G +V G V      GA+IDIGG     L   + +   V D+   L   + L+ +++    
Sbjct: 28  GQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAALHAVLDLEAHLPKDEELEFLVIRDQN 87

Query: 558 ERGRVSLSTKKL 593
           E G+V++S + L
Sbjct: 88  EDGQVTVSLRAL 99

---

>Q1XDE2:RR1_PORYE Chloroplast 30S ribosomal protein S1 - Porphyra yezoensis|
          Length = 263

 Score =  110 bits (274), Expect = 1e-23
 Identities = 58/185 (31%), Positives = 103/185 (55%), Gaps = 1/185 (0%)
 Frame = +3

Query: 42  QFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXXXXXXXXXXXXALVEGLK 221
           +F ++D N   +             AW+R RQL AED                  +EG+ 
Sbjct: 78  EFFLLDYNIQSKQLILSIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGIS 137

Query: 222 AFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAM-ADSQAQLGIGSVVLG 398
            FVP S + +   +E+  +K + LK + V+E+   L+LS+R+A+ + + + L +G+++ G
Sbjct: 138 GFVPNSHLGNFQKSEQFNNKFIKLKLLNVEEKSNNLILSHRRALISQASSNLIVGNIIEG 197

Query: 399 TVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSL 578
            +  + PYG FI +G + GL+H+S+I+   +  IS+  + GDT+K +I+  D+++GR+SL
Sbjct: 198 IINQITPYGLFIKVGNLKGLVHISEINIKNLEQISSQFKIGDTIKAVIIHVDKKQGRLSL 257

Query: 579 STKKL 593
           S K L
Sbjct: 258 SMKHL 262



 Score = 38.9 bits (89), Expect = 0.035
 Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
 Frame = +3

Query: 372 LGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILS 548
           L +G +V GT+ S +  G  +DIG  I+  L + ++S ++  +  T L   DT +  +L 
Sbjct: 24  LNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQEVSSNQDLNNFTSLNINDTREFFLLD 83

Query: 549 HDRERGRVSLSTKKLE 596
           ++ +  ++ LS ++LE
Sbjct: 84  YNIQSKQLILSIRRLE 99

---

>P50889:RS1_LEULA 40S ribosomal protein S1 - Leuconostoc lactis|
          Length = 429

 Score =  108 bits (271), Expect = 3e-23
 Identities = 64/162 (39%), Positives = 99/162 (61%), Gaps = 11/162 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQ----- 365
           V G++ FVP S V+ +  ++  +  +K++  + +E+D    RL+LS RKA+A  +     
Sbjct: 163 VNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPANARLILS-RKAVAAQELAAQL 221

Query: 366 ----AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLK 533
               ++L +G VV GTV  L  +GAF+D+GG++GL+HVS+ISHDRV + + VL  GD + 
Sbjct: 222 AEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVD 281

Query: 534 VMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMA 659
           V IL+ D E+GR+SLS K  +  P D         E AD++A
Sbjct: 282 VKILALDTEKGRISLSIKATQRGPWD---------EAADQIA 314



 Score = 79.3 bits (194), Expect = 2e-14
 Identities = 53/139 (38%), Positives = 80/139 (57%), Gaps = 6/139 (4%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAEELLDKE-LPLKFVEVDEEQGRLVLS----NRKAMADSQAQ 371
           V+GL      S    K  A+ L   + + +K + +D E+GR+ LS     R    ++  Q
Sbjct: 253 VDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQ 312

Query: 372 LGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILS 548
           +  GSV+ GTV+ +K +GAF++I  GI GL+HVSQIS+ R+ + S VL+ GD ++V +L 
Sbjct: 313 IAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLD 372

Query: 549 HDRERGRVSLSTKKLEPTP 605
                 R+SLS K LE  P
Sbjct: 373 IKPAEERISLSMKALEEKP 391

---

>P51345:RR1_PORPU Chloroplast 30S ribosomal protein S1 - Porphyra purpurea|
          Length = 263

 Score =  106 bits (265), Expect = 1e-22
 Identities = 58/186 (31%), Positives = 101/186 (54%), Gaps = 1/186 (0%)
 Frame = +3

Query: 42  QFMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXXXXXXXXXXXXALVEGLK 221
           +F ++D N                 AW+R RQL AED                  +EG+ 
Sbjct: 78  EFFLLDYNVESRQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGIS 137

Query: 222 AFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAM-ADSQAQLGIGSVVLG 398
            FVP S +++ +      +K + LK + V+E+   L+LS+R+A+ A + + L +G+++ G
Sbjct: 138 GFVPNSHLNNFSKNTSSTNKFIKLKLLNVEEKSNNLILSHRRALIAQASSNLIVGNIIEG 197

Query: 399 TVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSL 578
            +  + PYG FI  G + GL+H+S+I+  +V  I +  + GDT+K +I+  D+++GR+SL
Sbjct: 198 VINQITPYGLFIKAGNLKGLVHISEINVKQVERIPSQFKIGDTIKAVIIHVDKKQGRLSL 257

Query: 579 STKKLE 596
           S K L+
Sbjct: 258 SMKHLK 263



 Score = 38.1 bits (87), Expect = 0.059
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +3

Query: 372 LGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILS 548
           L +G +V GT+ S +  G  +DIG  ++  L + ++S ++  +    L   DT +  +L 
Sbjct: 24  LNLGDIVAGTIFSFELNGVLVDIGTPVSAYLPIQEVSSNQELNNFNSLNINDTREFFLLD 83

Query: 549 HDRERGRVSLSTKKLE 596
           ++ E  ++ LS ++LE
Sbjct: 84  YNVESRQLILSIRRLE 99

---

>P74142:RS1B_SYNY3 30S ribosomal protein S1 homolog B - Synechocystis sp. (strain PCC|
           6803)
          Length = 305

 Score =  104 bits (259), Expect = 7e-22
 Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 1/205 (0%)
 Frame = +3

Query: 45  FMIIDENPNDETXXXXXXXXXXDLAWERCRQLQAEDXXXXXXXXXXXXXXXXALVEGLKA 224
           F++  E  ++              +WE   +L+                     VEGL+ 
Sbjct: 81  FLVTSEQNDEGQVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTNKGGVVGDVEGLRG 140

Query: 225 FVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAM-ADSQAQLGIGSVVLGT 401
           F+P S +  K   + L+ + L    +E +++  +LVL+ R+   A+S  ++  G++  G 
Sbjct: 141 FIPRSHLMHKDNMDALVGQVLKAHILEANQDNNKLVLTQRRIQQAESMGKIAAGNIYEGK 200

Query: 402 VESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLS 581
           V  ++PYG F++I G+ GLLHVSQ+S  RV  ++T+   G  + V +   D  + R+SLS
Sbjct: 201 VAKIQPYGVFVEIEGVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYKNRISLS 260

Query: 582 TKKLEPTPGDMIRNPKLVFEKADEM 656
           T+ LE  PG+++       EK DEM
Sbjct: 261 TRILETYPGELV-------EKFDEM 278

---

>P38494:RS1H_BACSU 30S ribosomal protein S1 homolog - Bacillus subtilis|
          Length = 382

 Score =  100 bits (249), Expect = 1e-20
 Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 10/145 (6%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ----- 371
           G++ F+P S V +    +  +   K L L  VE+D ++ R++LS+R  +   QA      
Sbjct: 122 GVRGFIPASLVEAHFVEDFTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQEL 181

Query: 372 ---LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
              L +GSV+ G V+ L  +GAF+DIGGI+GL+H+SQ+SH  V   S V++ G  +KV +
Sbjct: 182 LQSLEVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKV 241

Query: 543 LSHDRERGRVSLSTKKLEPTPGDMI 617
           LS DR+  R+SLS K   P P + I
Sbjct: 242 LSVDRDNERISLSIKDTLPGPWNQI 266



 Score = 74.7 bits (182), Expect = 6e-13
 Identities = 47/142 (33%), Positives = 81/142 (57%), Gaps = 9/142 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDK--ELPLKFVEVDEEQGRLVLSNRKAMADSQAQL 374
           + G+   V  SQ+S     +  +++++  E+ +K + VD +  R+ LS +  +     Q+
Sbjct: 207 IGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQI 266

Query: 375 GI----GSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
           G     G V+ GTV+ L  +GAF++I  G+ GL+H+SQIS+  +     VL+ G T+KV 
Sbjct: 267 GEKVKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVK 326

Query: 540 ILSHDRERGRVSLSTKKLEPTP 605
           +L  +    R+SLS ++LE TP
Sbjct: 327 VLDVNENEERISLSMRELEETP 348

---

>O06000:RS1H_BACC1 30S ribosomal protein S1 homolog - Bacillus cereus (strain ATCC|
           10987)
          Length = 382

 Score = 99.8 bits (247), Expect = 2e-20
 Identities = 57/145 (39%), Positives = 89/145 (61%), Gaps = 10/145 (6%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMA---DSQAQLG 377
           G++ F+P S V      +  +   K L +K VE+D E+ R++LS++  +    DS+ +  
Sbjct: 123 GVRGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182

Query: 378 I-----GSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
           I     G VV GTV+ L  +GAF+++GG++GL+H+SQISH+RV   S VL+ G  +KV +
Sbjct: 183 ISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKV 242

Query: 543 LSHDRERGRVSLSTKKLEPTPGDMI 617
           LS D +  R+SLS K  +P P + I
Sbjct: 243 LSVDADTQRISLSIKAAQPGPWENI 267



 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDK--ELPLKFVEVDEEQGRLVLSNRKAMA----DS 362
           V G+   V  SQ+S +   +  E+L++  ++ +K + VD +  R+ LS + A      + 
Sbjct: 208 VGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENI 267

Query: 363 QAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
             ++  G +  G V+ L  +GAF++I  G+ GL+HVSQI++  V + + VL+ G  +KV 
Sbjct: 268 AGEVKAGDIREGIVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVK 327

Query: 540 ILSHDRERGRVSLSTKK 590
           +L       R+SLS K+
Sbjct: 328 VLEVHVAEKRISLSIKE 344

---

>Q48082:RS1_HAEIN 30S ribosomal protein S1 - Haemophilus influenzae|
          Length = 549

 Score = 94.7 bits (234), Expect = 5e-19
 Identities = 52/143 (36%), Positives = 86/143 (60%), Gaps = 10/143 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTT--AEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ--- 371
           + G++AF+P S V ++    A+ LL KEL  K +++D+++  +V+S R  +    +Q   
Sbjct: 124 LNGVRAFLPGSLVDTRPAREADHLLGKELEFKVIKLDQKRNNVVVSRRAVIESENSQERE 183

Query: 372 -----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV 536
                L  GS V G V++L  YGAF+D+GG++GLLH++ ++  RV   S ++  GD + V
Sbjct: 184 QVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEVTV 243

Query: 537 MILSHDRERGRVSLSTKKLEPTP 605
            +L  D++R RVSL  K+L   P
Sbjct: 244 KVLKFDKDRTRVSLGLKQLGQDP 266



 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 37/114 (32%), Positives = 66/114 (57%), Gaps = 6/114 (5%)
 Frame = +3

Query: 282 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLG----IGSVVLGTVESLKPYGAFIDI-GG 446
           E+ +K ++ D+++ R+ L  ++   D  A +     + S + G V +L  YG F++I  G
Sbjct: 240 EVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFVEILDG 299

Query: 447 INGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           + GL+HVS++   ++    S V+  GDT++VM+L  D ER R+SL  K+ +  P
Sbjct: 300 VEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANP 353



 Score = 55.5 bits (132), Expect = 4e-07
 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
 Frame = +3

Query: 300 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 464
           +E+DEE+ R+ L  ++  A+   Q       G  V G ++S+  +G FI + GGI+GL+H
Sbjct: 333 LEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFGIFIGLEGGIDGLVH 392

Query: 465 VSQISHDRVADISTVLQ--PGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           +S IS   ++    V Q   GD +  ++L+ D  + R+SL  K+LE  P
Sbjct: 393 LSDISWS-ISGEEAVRQYKKGDEVSAVVLAVDAVKERISLGIKQLEEDP 440



 Score = 32.0 bits (71), Expect = 4.2
 Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 2/128 (1%)
 Frame = +3

Query: 210 EGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQ-GRLVLSNRKAMADSQAQLGIGS 386
           E ++ +    +VS+   A + + + + L   +++E+     V  N+K           G+
Sbjct: 404 EAVRQYKKGDEVSAVVLAVDAVKERISLGIKQLEEDPFNNFVAINKK-----------GA 452

Query: 387 VVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRER 563
           VV  TV      GA +++ GG+ G +        R AD+++ +  GD ++      DR+ 
Sbjct: 453 VVSATVVEADAKGAKVELAGGVEGYI--------RSADLTSEVAVGDVVEAKYTGVDRKS 504

Query: 564 GRVSLSTK 587
             V LS K
Sbjct: 505 RIVHLSVK 512

---

>Q9HZ71:RS1_PSEAE 30S ribosomal protein S1 - Pseudomonas aeruginosa|
          Length = 559

 Score = 91.7 bits (226), Expect = 5e-18
 Identities = 52/143 (36%), Positives = 85/143 (59%), Gaps = 10/143 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAM-ADSQAQ-- 371
           V G++AF+P S V  +   +   L  KEL  K +++D+++  +V+S R  + A++ A+  
Sbjct: 124 VNGIRAFLPGSLVDVRPVRDTTHLEGKELEFKVIKLDQKRNNVVVSRRSVLEAENSAERE 183

Query: 372 -----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV 536
                L  G  V G V++L  YGAF+D+GG++GLLH++ ++  R+   S ++  GD + V
Sbjct: 184 ALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRIKHPSEIVNVGDEIDV 243

Query: 537 MILSHDRERGRVSLSTKKLEPTP 605
            +L  DRER RVSL  K+L   P
Sbjct: 244 KVLKFDRERNRVSLGLKQLGEDP 266



 Score = 69.3 bits (168), Expect = 2e-11
 Identities = 41/114 (35%), Positives = 70/114 (61%), Gaps = 6/114 (5%)
 Frame = +3

Query: 282 ELPLKFVEVDEEQGRLVLSNRKAMA----DSQAQLGIGSVVLGTVESLKPYGAFIDI-GG 446
           E+ ++ +++DEE+ R+ L  ++  +    D  +Q   G  + GT++S+  +G FI + GG
Sbjct: 327 EVEVQVLDIDEERRRISLGIKQCKSNPWEDFSSQFNKGDRISGTIKSITDFGIFIGLDGG 386

Query: 447 INGLLHVSQISHDRVADIST-VLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           I+GL+H+S IS + V + +    + GD L+ +ILS D ER R+SL  K+LE  P
Sbjct: 387 IDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERERISLGIKQLEDDP 440



 Score = 68.2 bits (165), Expect = 5e-11
 Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 10/181 (5%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAEELLDK-----ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLG 377
           G+   V  S +S     EE + +     EL    + VD E+ R+ L  ++   D  +   
Sbjct: 386 GIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERERISLGIKQLEDDPFSNYA 445

Query: 378 I----GSVVLGTVESLKPYGAFIDIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
                GS+V GTV+ +   GA I +G  I G+L  S+IS DRV D   VL+ G+ ++  I
Sbjct: 446 SLHEKGSIVRGTVKEVDAKGAVISLGDDIEGILKASEISRDRVEDARNVLKEGEEVEAKI 505

Query: 543 LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQAEAMARADMLRF 722
           +S DR+   +SLS K             K V ++ D M ++ +Q +  A      D++R 
Sbjct: 506 ISIDRKSRVISLSVKS------------KDVDDEKDAMKELRKQEVESAGPTTIGDLIRA 553

Query: 723 Q 725
           Q
Sbjct: 554 Q 554

---

>P14129:RS1_RHIME 30S ribosomal protein S1 - Rhizobium meliloti (Sinorhizobium|
           meliloti)
          Length = 568

 Score = 91.3 bits (225), Expect = 6e-18
 Identities = 53/147 (36%), Positives = 87/147 (59%), Gaps = 10/147 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ--- 371
           ++G  AF+P SQV  +   +   L+    P + +++D+ +G +V+S R  + +S+A+   
Sbjct: 130 LDGAVAFLPRSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRS 189

Query: 372 -----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV 536
                L  G VV G V+++  YGAF+D+GGI+GLLHV+ ++  RV   S +L  G  +KV
Sbjct: 190 EIVQNLEEGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKV 249

Query: 537 MILSHDRERGRVSLSTKKLEPTPGDMI 617
            I+  ++E  R+SL  K+LE  P D I
Sbjct: 250 QIIRINQETHRISLGMKQLESDPWDGI 276



 Score = 50.8 bits (120), Expect = 9e-06
 Identities = 29/117 (24%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
 Frame = +3

Query: 273 LDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLG----IGSVVLGTVESLKPYGAFIDI 440
           + +++ ++ + +++E  R+ L  ++  +D    +G    +G  + GTV ++  YGAF+++
Sbjct: 243 IGQQVKVQIIRINQETHRISLGMKQLESDPWDGIGAKYPVGKKISGTVTNITDYGAFVEL 302

Query: 441 -GGINGLLHVSQISHDRV-ADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
             GI GL+H+S++S  +       +L     + V++L  D  + R+SL  K+    P
Sbjct: 303 EPGIEGLIHISEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENP 359



 Score = 43.1 bits (100), Expect = 0.002
 Identities = 32/137 (23%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMADSQAQLG- 377
           +EGL      S         ++L   +E+ +  +EVD  + R+ L  ++ + +       
Sbjct: 306 IEGLIHISEMSWTKKNVHPGKILSTSQEVDVVVLEVDPTKRRISLGLKQTLENPWQAFAH 365

Query: 378 ---IGSVVLGTVESLKPYGAFIDIGG-INGLLHVSQISHDRVAD-ISTVLQPGDTLKVMI 542
               G+ V G V++   +G FI + G ++G++H+S +  +R  + +      GD ++ ++
Sbjct: 366 SHPAGTEVEGEVKNKTEFGLFIGLDGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVV 425

Query: 543 LSHDRERGRVSLSTKKL 593
           L  D ++ R+SL  K+L
Sbjct: 426 LDVDVDKERISLGIKQL 442

---

>Q89AJ3:RS1_BUCBP 30S ribosomal protein S1 - Buchnera aphidicola subsp. Baizongia|
           pistaciae
          Length = 566

 Score = 90.1 bits (222), Expect = 1e-17
 Identities = 53/144 (36%), Positives = 87/144 (60%), Gaps = 11/144 (7%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ--- 371
           +E ++AF+P S V  +   E   L  KEL  K +++D+++  +V+S R+A+ +S+     
Sbjct: 124 LEDIRAFLPGSLVDIRPVRETMHLEGKELEFKVIKLDQKRNNVVVS-RRAVIESEYNAER 182

Query: 372 ------LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLK 533
                 L  G +V G V++L  YGAF+D+GG++GLLH++ ++  RV   S ++  GD +K
Sbjct: 183 NLLLETLQEGLIVSGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNIGDEVK 242

Query: 534 VMILSHDRERGRVSLSTKKLEPTP 605
           + IL  DRE+ RVSL  K+L   P
Sbjct: 243 IKILKFDREKIRVSLGLKQLSDDP 266



 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
 Frame = +3

Query: 282 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIG----SVVLGTVESLKPYGAFIDIG-G 446
           E+ +K ++ D E+ R+ L  ++   D   ++       + + G V +L  YG F++I  G
Sbjct: 240 EVKIKILKFDREKIRVSLGLKQLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIEEG 299

Query: 447 INGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           + GL+HVS++   ++    S ++Q    +KVMIL  D ER R+SL  K+ +  P
Sbjct: 300 VEGLVHVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKNNP 353

---

>Q92HM4:RS1_RICCN 30S ribosomal protein S1 - Rickettsia conorii|
          Length = 568

 Score = 89.0 bits (219), Expect = 3e-17
 Identities = 49/148 (33%), Positives = 88/148 (59%), Gaps = 10/148 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ--- 371
           + G+ AF+P SQV  +   +   +++ + P K + +D++ G +V+S R  + +S+++   
Sbjct: 137 LSGVVAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARD 196

Query: 372 -----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV 536
                +  G V+ GTV+++  YGAFID+G ++GLLH++ IS  RV   S VL     +KV
Sbjct: 197 EMLSKIKEGMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLDFNQKVKV 256

Query: 537 MILSHDRERGRVSLSTKKLEPTPGDMIR 620
           M++  D +  R+SL  K+L+  P + I+
Sbjct: 257 MVIKFDEKNKRISLGIKQLDSNPWEAIK 284



 Score = 54.3 bits (129), Expect = 8e-07
 Identities = 35/145 (24%), Positives = 76/145 (52%), Gaps = 11/145 (7%)
 Frame = +3

Query: 204 LVEGLKAFVPFSQVSSKTTAEE-----LLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA 368
           L +GL+  V  S++S   + +       + +E+    +EVD E+ R+ LS ++   +   
Sbjct: 309 LKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQCQENPLT 368

Query: 369 QLG----IGSVVLGTVESLKPYGAFIDIGG-INGLLHVSQIS-HDRVADISTVLQPGDTL 530
           +      +G+++   + ++  +G F+ +G  ++G++H   IS  D+  D+    + GD +
Sbjct: 369 KFAENNPVGTIIKAPIRNITDFGIFVALGNNMDGMIHEGDISWEDKGTDLLKSYKKGDEI 428

Query: 531 KVMILSHDRERGRVSLSTKKLEPTP 605
           +  +L+ + E+ +VSL  K+L P P
Sbjct: 429 ECKVLAINIEKEQVSLGIKQLSPNP 453



 Score = 45.4 bits (106), Expect = 4e-04
 Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
 Frame = +3

Query: 267 ELLD--KELPLKFVEVDEEQGRLVLSNRKAMADS----QAQLGIGSVVLGTVESLKPYGA 428
           E+LD  +++ +  ++ DE+  R+ L  ++  ++     + +  +G  + G V +   YG 
Sbjct: 246 EVLDFNQKVKVMVIKFDEKNKRISLGIKQLDSNPWEAIKEEFPVGKQMTGKVTNFADYGV 305

Query: 429 FIDI-GGINGLLHVSQISHDRV-ADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPT 602
           FI++  G+ GL+H S+IS  +   +    L  G  ++ ++L  D E+ RVSLS K+ +  
Sbjct: 306 FIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQCQEN 365

Query: 603 P 605
           P
Sbjct: 366 P 366



 Score = 35.0 bits (79), Expect = 0.50
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
 Frame = +3

Query: 297 FVE-VDEEQGRLVLSNRKAMADSQ-AQLGI----GSVVLGTVESLKPYGAFIDIGGINGL 458
           F+E ++   GR +LS  KA+ +    QL I    G  V GT+      G  +D+ G+   
Sbjct: 84  FIEKIEGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTIFGRVKGGFTVDLSGVVAF 143

Query: 459 LHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 593
           L  SQ+    + D ++++      K  ILS D++ G + +S + +
Sbjct: 144 LPGSQVDVRPIKDPTSIMNIKQPFK--ILSMDKKLGNIVVSRRAI 186

---

>P14128:RS1_PROSP 30S ribosomal protein S1 - Providencia sp.|
          Length = 378

 Score = 89.0 bits (219), Expect = 3e-17
 Identities = 52/143 (36%), Positives = 85/143 (59%), Gaps = 10/143 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAM-ADSQAQ-- 371
           + G++AF+P S V  +   +   L  KEL  K +++D+++  +V+S R  + ++S A+  
Sbjct: 19  LNGIRAFLPGSLVDVRPVRDTTHLEGKELEFKVIKLDQKRNNVVVSRRAVIESESSAERD 78

Query: 372 -----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV 536
                L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   S ++  GD + V
Sbjct: 79  QLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITV 138

Query: 537 MILSHDRERGRVSLSTKKLEPTP 605
            +L  DRER RVSL  K+L   P
Sbjct: 139 KVLKFDRERTRVSLGLKQLGEDP 161



 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
 Frame = +3

Query: 282 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDIG-G 446
           E+ +K ++ D E+ R+ L  ++   D    +      G+ + G V +L  YG F++I  G
Sbjct: 135 EITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEG 194

Query: 447 INGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           + GL+HVS++   ++    S V+  GD ++VM+L  D ER R+SL  K+ +  P
Sbjct: 195 VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNP 248



 Score = 53.9 bits (128), Expect = 1e-06
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
 Frame = +3

Query: 300 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 464
           +++DEE+ R+ L  ++  ++   Q       G  V G ++S+  +G FI + GGI+GL+H
Sbjct: 228 LDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGLEGGIDGLVH 287

Query: 465 VSQISHDRVADIST-VLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           +S IS +   + +    + GD +  ++L  D ER R+SL  K+L   P
Sbjct: 288 LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 335

---

>P0AG70:RS1_SHIFL 30S ribosomal protein S1 - Shigella flexneri|
          Length = 557

 Score = 88.2 bits (217), Expect = 5e-17
 Identities = 50/143 (34%), Positives = 81/143 (56%), Gaps = 10/143 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA---- 368
           + G++AF+P S V  +   +   L  KEL  K +++D+++  +V+S R  +    +    
Sbjct: 124 LNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERD 183

Query: 369 ----QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV 536
                L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   S ++  GD + V
Sbjct: 184 QLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243

Query: 537 MILSHDRERGRVSLSTKKLEPTP 605
            +L  DRER RVSL  K+L   P
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP 266



 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
 Frame = +3

Query: 282 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDIG-G 446
           E+ +K ++ D E+ R+ L  ++   D    +      G+ + G V +L  YG F++I  G
Sbjct: 240 EITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEG 299

Query: 447 INGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           + GL+HVS++   ++    S V+  GD ++VM+L  D ER R+SL  K+ +  P
Sbjct: 300 VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353



 Score = 55.1 bits (131), Expect = 5e-07
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
 Frame = +3

Query: 300 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 464
           +++DEE+ R+ L  ++  A+   Q       G  V G ++S+  +G FI + GGI+GL+H
Sbjct: 333 LDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH 392

Query: 465 VSQISHDRVADIST-VLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           +S IS +   + +    + GD +  ++L  D ER R+SL  K+L   P
Sbjct: 393 LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 440



 Score = 52.4 bits (124), Expect = 3e-06
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAEELLDK-----ELPLKFVEVDEEQGRLVLSNRKAMADS----Q 365
           G+   V  S +S     EE + +     E+    ++VD E+ R+ L  ++   D      
Sbjct: 386 GIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445

Query: 366 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
           A    G++V G V ++   GA +++  G+ G L  S+ S DRV D + VL  GD ++   
Sbjct: 446 ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKF 505

Query: 543 LSHDRERGRVSLSTK 587
              DR+   +SLS +
Sbjct: 506 TGVDRKNRAISLSVR 520

---

>Q68WL4:RS1_RICTY 30S ribosomal protein S1 - Rickettsia typhi|
          Length = 568

 Score = 88.2 bits (217), Expect = 5e-17
 Identities = 48/148 (32%), Positives = 88/148 (59%), Gaps = 10/148 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ--- 371
           + G+ AF+P SQV  +   +   +++ + P K + +D++ G +V+S R  + +S+++   
Sbjct: 137 LSGVVAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARD 196

Query: 372 -----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV 536
                +  G ++ G V+++  YGAFID+G ++GLLH++ IS  RV   S VL+    +KV
Sbjct: 197 EMLSKIKEGMILEGVVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQKVKV 256

Query: 537 MILSHDRERGRVSLSTKKLEPTPGDMIR 620
           M++  D +  R+SL  K+L+  P D I+
Sbjct: 257 MVIKFDEKTKRISLGIKQLDSNPWDAIK 284



 Score = 53.5 bits (127), Expect = 1e-06
 Identities = 38/145 (26%), Positives = 76/145 (52%), Gaps = 11/145 (7%)
 Frame = +3

Query: 204 LVEGLKAFVPFSQVS---SKTTAEELLDKELPLKFV--EVDEEQGRLVLSNRKAMADSQA 368
           L +GL+  V  S++S   S     ++L     ++F+  EVD E+ R+ LS ++   +   
Sbjct: 309 LKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQCQENPLI 368

Query: 369 QLG----IGSVVLGTVESLKPYGAFIDIGG-INGLLHVSQIS-HDRVADISTVLQPGDTL 530
           +      IG+++   + ++  +G F+ +G  ++G++H   IS  D   D+    + GD +
Sbjct: 369 KFAENNPIGTIIKAPIRNITDFGIFVVLGNNMDGMIHEGDISWEDNGTDLLKSYKKGDEI 428

Query: 531 KVMILSHDRERGRVSLSTKKLEPTP 605
           +  +L+ + E+ +VSL  K+L P P
Sbjct: 429 ECKVLAINFEKEQVSLGIKQLSPNP 453



 Score = 34.7 bits (78), Expect = 0.65
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
 Frame = +3

Query: 297 FVE-VDEEQGRLVLSNRKAMADSQ-AQLGI----GSVVLGTVESLKPYGAFIDIGGINGL 458
           F+E ++   GR +LS  KA+ +    QL I    G  V GT+      G  +D+ G+   
Sbjct: 84  FIEKIEGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTIFGRVKGGFTVDLSGVVAF 143

Query: 459 LHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTK 587
           L  SQ+    + D ++++      K  ILS D++ G + +S +
Sbjct: 144 LPGSQVDVRPIKDPTSIMNIKQPFK--ILSMDKKLGNIVVSRR 184

---

>Q9ZD28:RS1_RICPR 30S ribosomal protein S1 - Rickettsia prowazekii|
          Length = 568

 Score = 88.2 bits (217), Expect = 5e-17
 Identities = 49/148 (33%), Positives = 88/148 (59%), Gaps = 10/148 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ--- 371
           + G+ AF+P SQV  +   +   +++ + P K + +D++ G +V+S R  + +S+++   
Sbjct: 137 LSGVVAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARD 196

Query: 372 -----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV 536
                +  G V+ G V+++  YGAFID+G ++GLLH++ IS  RV   S VL+    +KV
Sbjct: 197 EMLSKIKEGIVLEGVVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQKVKV 256

Query: 537 MILSHDRERGRVSLSTKKLEPTPGDMIR 620
           M++  D +  R+SL  K+L+  P D I+
Sbjct: 257 MVIKFDEKTKRISLGIKQLDSNPWDAIK 284



 Score = 52.4 bits (124), Expect = 3e-06
 Identities = 38/145 (26%), Positives = 76/145 (52%), Gaps = 11/145 (7%)
 Frame = +3

Query: 204 LVEGLKAFVPFSQVS---SKTTAEELLDKELPLKFV--EVDEEQGRLVLSNRKAMADSQA 368
           L +GL+  V  S++S   S     ++L     ++F+  EVD E+ R+ LS ++   +   
Sbjct: 309 LKDGLEGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQCQENPLI 368

Query: 369 QLG----IGSVVLGTVESLKPYGAFIDIGG-INGLLHVSQIS-HDRVADISTVLQPGDTL 530
           +      IG+++   + ++  +G F+ +G  ++G++H   IS  D   D+    + GD +
Sbjct: 369 KFAENNPIGTIIKAPIRNITDFGIFVVLGNNMDGMIHEGDISWEDNGTDLLKSYKKGDEI 428

Query: 531 KVMILSHDRERGRVSLSTKKLEPTP 605
           +  +L+ + E+ +VSL  K+L P P
Sbjct: 429 ECKVLAINFEKEQVSLGIKQLLPNP 453



 Score = 34.7 bits (78), Expect = 0.65
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
 Frame = +3

Query: 297 FVE-VDEEQGRLVLSNRKAMADSQ-AQLGI----GSVVLGTVESLKPYGAFIDIGGINGL 458
           F+E ++   GR +LS  KA+ +    QL I    G  V GT+      G  +D+ G+   
Sbjct: 84  FIEKIEGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTIFGRVKGGFTVDLSGVVAF 143

Query: 459 LHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTK 587
           L  SQ+    + D ++++      K  ILS D++ G + +S +
Sbjct: 144 LPGSQVDVRPIKDPTSIMNIKQPFK--ILSMDKKLGNIVVSRR 184

---

>P0AG67:RS1_ECOLI 30S ribosomal protein S1 - Escherichia coli|
          Length = 557

 Score = 88.2 bits (217), Expect = 5e-17
 Identities = 50/143 (34%), Positives = 81/143 (56%), Gaps = 10/143 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA---- 368
           + G++AF+P S V  +   +   L  KEL  K +++D+++  +V+S R  +    +    
Sbjct: 124 LNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERD 183

Query: 369 ----QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV 536
                L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   S ++  GD + V
Sbjct: 184 QLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243

Query: 537 MILSHDRERGRVSLSTKKLEPTP 605
            +L  DRER RVSL  K+L   P
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP 266



 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
 Frame = +3

Query: 282 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDIG-G 446
           E+ +K ++ D E+ R+ L  ++   D    +      G+ + G V +L  YG F++I  G
Sbjct: 240 EITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEG 299

Query: 447 INGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           + GL+HVS++   ++    S V+  GD ++VM+L  D ER R+SL  K+ +  P
Sbjct: 300 VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353



 Score = 55.1 bits (131), Expect = 5e-07
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
 Frame = +3

Query: 300 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 464
           +++DEE+ R+ L  ++  A+   Q       G  V G ++S+  +G FI + GGI+GL+H
Sbjct: 333 LDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH 392

Query: 465 VSQISHDRVADIST-VLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           +S IS +   + +    + GD +  ++L  D ER R+SL  K+L   P
Sbjct: 393 LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 440



 Score = 52.4 bits (124), Expect = 3e-06
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAEELLDK-----ELPLKFVEVDEEQGRLVLSNRKAMADS----Q 365
           G+   V  S +S     EE + +     E+    ++VD E+ R+ L  ++   D      
Sbjct: 386 GIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445

Query: 366 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
           A    G++V G V ++   GA +++  G+ G L  S+ S DRV D + VL  GD ++   
Sbjct: 446 ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKF 505

Query: 543 LSHDRERGRVSLSTK 587
              DR+   +SLS +
Sbjct: 506 TGVDRKNRAISLSVR 520

---

>P0AG68:RS1_ECOL6 30S ribosomal protein S1 - Escherichia coli O6|
          Length = 557

 Score = 88.2 bits (217), Expect = 5e-17
 Identities = 50/143 (34%), Positives = 81/143 (56%), Gaps = 10/143 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA---- 368
           + G++AF+P S V  +   +   L  KEL  K +++D+++  +V+S R  +    +    
Sbjct: 124 LNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERD 183

Query: 369 ----QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV 536
                L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   S ++  GD + V
Sbjct: 184 QLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243

Query: 537 MILSHDRERGRVSLSTKKLEPTP 605
            +L  DRER RVSL  K+L   P
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP 266



 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
 Frame = +3

Query: 282 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDIG-G 446
           E+ +K ++ D E+ R+ L  ++   D    +      G+ + G V +L  YG F++I  G
Sbjct: 240 EITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEG 299

Query: 447 INGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           + GL+HVS++   ++    S V+  GD ++VM+L  D ER R+SL  K+ +  P
Sbjct: 300 VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353



 Score = 55.1 bits (131), Expect = 5e-07
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
 Frame = +3

Query: 300 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 464
           +++DEE+ R+ L  ++  A+   Q       G  V G ++S+  +G FI + GGI+GL+H
Sbjct: 333 LDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH 392

Query: 465 VSQISHDRVADIST-VLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           +S IS +   + +    + GD +  ++L  D ER R+SL  K+L   P
Sbjct: 393 LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 440



 Score = 52.4 bits (124), Expect = 3e-06
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAEELLDK-----ELPLKFVEVDEEQGRLVLSNRKAMADS----Q 365
           G+   V  S +S     EE + +     E+    ++VD E+ R+ L  ++   D      
Sbjct: 386 GIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445

Query: 366 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
           A    G++V G V ++   GA +++  G+ G L  S+ S DRV D + VL  GD ++   
Sbjct: 446 ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKF 505

Query: 543 LSHDRERGRVSLSTK 587
              DR+   +SLS +
Sbjct: 506 TGVDRKNRAISLSVR 520

---

>P0AG69:RS1_ECO57 30S ribosomal protein S1 - Escherichia coli O157:H7|
          Length = 557

 Score = 88.2 bits (217), Expect = 5e-17
 Identities = 50/143 (34%), Positives = 81/143 (56%), Gaps = 10/143 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA---- 368
           + G++AF+P S V  +   +   L  KEL  K +++D+++  +V+S R  +    +    
Sbjct: 124 LNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERD 183

Query: 369 ----QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV 536
                L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   S ++  GD + V
Sbjct: 184 QLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243

Query: 537 MILSHDRERGRVSLSTKKLEPTP 605
            +L  DRER RVSL  K+L   P
Sbjct: 244 KVLKFDRERTRVSLGLKQLGEDP 266



 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
 Frame = +3

Query: 282 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDIG-G 446
           E+ +K ++ D E+ R+ L  ++   D    +      G+ + G V +L  YG F++I  G
Sbjct: 240 EITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEG 299

Query: 447 INGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           + GL+HVS++   ++    S V+  GD ++VM+L  D ER R+SL  K+ +  P
Sbjct: 300 VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANP 353



 Score = 55.1 bits (131), Expect = 5e-07
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
 Frame = +3

Query: 300 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 464
           +++DEE+ R+ L  ++  A+   Q       G  V G ++S+  +G FI + GGI+GL+H
Sbjct: 333 LDIDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH 392

Query: 465 VSQISHDRVADIST-VLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           +S IS +   + +    + GD +  ++L  D ER R+SL  K+L   P
Sbjct: 393 LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDP 440



 Score = 52.4 bits (124), Expect = 3e-06
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAEELLDK-----ELPLKFVEVDEEQGRLVLSNRKAMADS----Q 365
           G+   V  S +S     EE + +     E+    ++VD E+ R+ L  ++   D      
Sbjct: 386 GIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV 445

Query: 366 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
           A    G++V G V ++   GA +++  G+ G L  S+ S DRV D + VL  GD ++   
Sbjct: 446 ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKF 505

Query: 543 LSHDRERGRVSLSTK 587
              DR+   +SLS +
Sbjct: 506 TGVDRKNRAISLSVR 520

---

>Q49XT0:RS1_STAS1 30S ribosomal protein S1 - Staphylococcus saprophyticus subsp.|
           saprophyticus (strain ATCC 15305 / DSM 20229)
          Length = 393

 Score = 87.0 bits (214), Expect = 1e-16
 Identities = 55/147 (37%), Positives = 82/147 (55%), Gaps = 11/147 (7%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAEELLDKE---LPLKFVEVDEEQGRLVLSNRKAMADSQAQ---- 371
           G + FVP S +S+    E+  D E   L LK  E+D    R++LS +   A   A+    
Sbjct: 128 GQRGFVPASLISTDFI-EDFSDFEGQVLKLKVEELDPANNRVILSRKAVEALENAEKKDE 186

Query: 372 ----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
               L  G V+ G V  L  +GAF+DIGG++GL+HVS++SH+ V     V+  G+T+ V 
Sbjct: 187 LLESLNEGDVIEGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVKSPEDVVSIGETVNVK 246

Query: 540 ILSHDRERGRVSLSTKKLEPTPGDMIR 620
           I S D++  R+SLS K   P+P + I+
Sbjct: 247 IKSVDKDSERISLSIKDTLPSPFESIK 273



 Score = 67.4 bits (163), Expect = 9e-11
 Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
 Frame = +3

Query: 291 LKFVEVDEEQGRLVLSNRKAMADS----QAQLGIGSVVLGTVESLKPYGAFIDIG-GING 455
           +K   VD++  R+ LS +  +       + +   G V+ GTV  L  +GAF++I  G+ G
Sbjct: 245 VKIKSVDKDSERISLSIKDTLPSPFESIKGEFNEGDVIEGTVVRLANFGAFVEIKPGVQG 304

Query: 456 LLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 599
           L+H+S+ISH  +   S  L+PG  + V +L  D E  R+SLS K   P
Sbjct: 305 LVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLP 352



 Score = 30.8 bits (68), Expect = 9.4
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 542
           G  V G V+ ++     + + G   NG++ +SQ+S   + + S  ++ GD +   +    
Sbjct: 16  GDKVTGEVQEIEEKQVIVAVNGAKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAYVTKVE 75

Query: 543 LSHDRERGRVSLSTKKLE 596
              + E G   LS ++LE
Sbjct: 76  YDEENETGAYILSKRQLE 93

---

>Q1RJH1:RS1_RICBR 30S ribosomal protein S1 - Rickettsia bellii (strain RML369-C)|
          Length = 572

 Score = 87.0 bits (214), Expect = 1e-16
 Identities = 48/148 (32%), Positives = 88/148 (59%), Gaps = 10/148 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ--- 371
           + G+ AF+P SQV  +   +   +++   P K + +D++ G +V+S R  + +S+++   
Sbjct: 140 LSGVVAFLPGSQVDVRPIKDPSSIMNIRQPFKILSMDKKLGNIVVSRRAILEESRSEARD 199

Query: 372 -----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV 536
                +  G ++ GTV+++  YGAFID+G ++GLLH++ IS  RV   S VL+    +KV
Sbjct: 200 EMLSKIKEGMILEGTVKNITDYGAFIDLGSVDGLLHLTDISWARVNHPSEVLEFNQKVKV 259

Query: 537 MILSHDRERGRVSLSTKKLEPTPGDMIR 620
           M++  + E  R+SL  K+L+  P + I+
Sbjct: 260 MVIKFNEETKRISLGMKQLDYNPWEKIK 287



 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAEEL-LDKELPLKFVEVDEEQGRLVLSNRKAMADS----QAQ 371
           V+GL      S       +E L  ++++ +  ++ +EE  R+ L  ++   +     + +
Sbjct: 230 VDGLLHLTDISWARVNHPSEVLEFNQKVKVMVIKFNEETKRISLGMKQLDYNPWEKIKEE 289

Query: 372 LGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRV-ADISTVLQPGDTLKVMIL 545
             +G  + G V +   YG FI++  G+ GL+H S+IS  +   +    L  G  ++ M+L
Sbjct: 290 FPVGKKMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFMVL 349

Query: 546 SHDRERGRVSLSTKKLEPTP 605
             D E+ RVSLS K+ +  P
Sbjct: 350 EVDTEKHRVSLSIKQCQQNP 369



 Score = 31.2 bits (69), Expect = 7.2
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
 Frame = +3

Query: 297 FVEVDEEQGRLVLSNRKAMADSQ-AQLGI----GSVVLGTVESLKPYGAFIDIGGINGLL 461
           ++E  E      LS  KA+ +    QL +    G  V GT+      G  +D+ G+   L
Sbjct: 88  YIEKTEGHSGKTLSREKAIKEELWGQLELICSKGEFVDGTIFGRVKGGFTVDLSGVVAFL 147

Query: 462 HVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 593
             SQ+    + D S+++      K  ILS D++ G + +S + +
Sbjct: 148 PGSQVDVRPIKDPSSIMNIRQPFK--ILSMDKKLGNIVVSRRAI 189

---

>Q6NDP1:RS1_RHOPA 30S ribosomal protein S1 - Rhodopseudomonas palustris|
          Length = 565

 Score = 87.0 bits (214), Expect = 1e-16
 Identities = 50/143 (34%), Positives = 84/143 (58%), Gaps = 10/143 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ--- 371
           ++G  AF+P SQV  +   +   L++   P + +++D  +G +V+S R  + +++A+   
Sbjct: 133 LDGAVAFLPRSQVDIRPIRDVAPLMNNSQPFQILKMDRRRGNIVVSRRTVLEETRAEQRQ 192

Query: 372 -----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV 536
                L  G V+ G V+++  YGAF+D+GGI+GLLHV+ I+  RV   + VL  G T+KV
Sbjct: 193 ELVQNLEEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKV 252

Query: 537 MILSHDRERGRVSLSTKKLEPTP 605
            I+  + E  R+SL  K+L   P
Sbjct: 253 KIIKINHETHRISLGMKQLLDDP 275



 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 32/128 (25%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
 Frame = +3

Query: 273 LDKELPLKFVEVDEEQGRLVLSNRKAMADS----QAQLGIGSVVLGTVESLKPYGAFIDI 440
           + + + +K ++++ E  R+ L  ++ + D     +A+  + +   G V ++  YGAF+++
Sbjct: 246 IGQTVKVKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGRVTNITDYGAFVEL 305

Query: 441 G-GINGLLHVSQISHDRV-ADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDM 614
             GI GL+HVS++S  +       ++     ++V +L  D  + R+SL  K+        
Sbjct: 306 EPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQ-------T 358

Query: 615 IRNPKLVF 638
           +RNP  VF
Sbjct: 359 MRNPWEVF 366

---

>Q7A5J0:RS1_STAAN 30S ribosomal protein S1 - Staphylococcus aureus (strain N315)|
          Length = 391

 Score = 86.7 bits (213), Expect = 1e-16
 Identities = 56/147 (38%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ------- 365
           G + FVP S +S+    +  + D + + +K  E+D E  R++LS RKA+   +       
Sbjct: 128 GQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQ 186

Query: 366 --AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
               L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV 
Sbjct: 187 LLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 540 ILSHDRERGRVSLSTKKLEPTPGDMIR 620
           I S DR+  R+SLS K   PTP + I+
Sbjct: 247 IKSIDRDTERISLSIKDTLPTPFENIK 273



 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSK--TTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DS 362
           + G+   V  S++S +   T EE++   +++ +K   +D +  R+ LS +  +     + 
Sbjct: 213 IGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENI 272

Query: 363 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
           + Q     V+ G V  L  +GAF++I  G+ GL+H+S+I+H  +     VL+PG  + V 
Sbjct: 273 KGQFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVK 332

Query: 540 ILSHDRERGRVSLSTKKLEP 599
           IL  D E  RVSLS K   P
Sbjct: 333 ILGIDEENERVSLSIKATLP 352



 Score = 33.5 bits (75), Expect = 1.5
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 542
           G  V G V+ ++     + I G   NG++ +SQ+S   +   S V++ GD ++  +    
Sbjct: 16  GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75

Query: 543 LSHDRERGRVSLSTKKLE 596
              + E G   LS ++LE
Sbjct: 76  FDEENETGAYILSRRQLE 93

---

>Q99U14:RS1_STAAM 30S ribosomal protein S1 - Staphylococcus aureus (strain Mu50 /|
           ATCC 700699)
          Length = 391

 Score = 86.7 bits (213), Expect = 1e-16
 Identities = 56/147 (38%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ------- 365
           G + FVP S +S+    +  + D + + +K  E+D E  R++LS RKA+   +       
Sbjct: 128 GQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQ 186

Query: 366 --AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
               L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV 
Sbjct: 187 LLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 540 ILSHDRERGRVSLSTKKLEPTPGDMIR 620
           I S DR+  R+SLS K   PTP + I+
Sbjct: 247 IKSIDRDTERISLSIKDTLPTPFENIK 273



 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSK--TTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DS 362
           + G+   V  S++S +   T EE++   +++ +K   +D +  R+ LS +  +     + 
Sbjct: 213 IGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENI 272

Query: 363 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
           + Q     V+ G V  L  +GAF++I  G+ GL+H+S+I+H  +     VL+PG  + V 
Sbjct: 273 KGQFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVK 332

Query: 540 ILSHDRERGRVSLSTKKLEP 599
           IL  D E  RVSLS K   P
Sbjct: 333 ILGIDEENERVSLSIKATLP 352



 Score = 33.5 bits (75), Expect = 1.5
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 542
           G  V G V+ ++     + I G   NG++ +SQ+S   +   S V++ GD ++  +    
Sbjct: 16  GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75

Query: 543 LSHDRERGRVSLSTKKLE 596
              + E G   LS ++LE
Sbjct: 76  FDEENETGAYILSRRQLE 93

---

>Q4ULF1:RS1_RICFE 30S ribosomal protein S1 - Rickettsia felis (Rickettsia azadi)|
          Length = 568

 Score = 86.7 bits (213), Expect = 1e-16
 Identities = 48/148 (32%), Positives = 88/148 (59%), Gaps = 10/148 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ--- 371
           + G+ AF+P SQV  +   +   +++ + P K + +D++   +V+S R  + +S+++   
Sbjct: 137 LSGVVAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLDNIVVSRRAILEESRSEARD 196

Query: 372 -----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKV 536
                +  G V+ GTV+++  YGAFID+G ++GLLH++ IS  RV   S VL+    +KV
Sbjct: 197 EMLSKIKEGMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQKVKV 256

Query: 537 MILSHDRERGRVSLSTKKLEPTPGDMIR 620
           M++  D +  R+SL  K+L+  P + I+
Sbjct: 257 MVIKFDEKTKRISLGIKQLDSNPWEAIK 284



 Score = 53.9 bits (128), Expect = 1e-06
 Identities = 35/145 (24%), Positives = 76/145 (52%), Gaps = 11/145 (7%)
 Frame = +3

Query: 204 LVEGLKAFVPFSQVSSKTTAEE-----LLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA 368
           L +GL+  V  S++S   + +       + +E+    +EVD E+ R+ LS ++   +   
Sbjct: 309 LRDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQCQENPLI 368

Query: 369 QLG----IGSVVLGTVESLKPYGAFIDIGG-INGLLHVSQIS-HDRVADISTVLQPGDTL 530
           +      +G+++   + ++  +G F+ +G  ++G++H   IS  D+  D+    + GD +
Sbjct: 369 KFAENNPVGTIIKAPIRNITDFGIFVALGNNMDGMIHEGDISWEDKGTDLLKSYKKGDEI 428

Query: 531 KVMILSHDRERGRVSLSTKKLEPTP 605
           +  +L+ + E+ +VSL  K+L P P
Sbjct: 429 ECKVLAINIEKEQVSLGVKQLSPNP 453



 Score = 44.3 bits (103), Expect = 8e-04
 Identities = 30/116 (25%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
 Frame = +3

Query: 276 DKELPLKFVEVDEEQGRLVLSNRKAMADS----QAQLGIGSVVLGTVESLKPYGAFIDI- 440
           ++++ +  ++ DE+  R+ L  ++  ++     + +  +G  + G V +   YG FI++ 
Sbjct: 251 NQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKKMTGKVTNFADYGVFIELR 310

Query: 441 GGINGLLHVSQISHDRV-ADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
            G+ GL+H S+IS  +   +    L  G  ++ ++L  D E+ RVSLS K+ +  P
Sbjct: 311 DGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVSLSIKQCQENP 366



 Score = 32.3 bits (72), Expect = 3.2
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
 Frame = +3

Query: 297 FVE-VDEEQGRLVLSNRKAMADSQ-AQLGI----GSVVLGTVESLKPYGAFIDIGGINGL 458
           F+E ++   GR +LS  KA+ +    QL I    G  V GT+      G  +D+ G+   
Sbjct: 84  FIEKIEGRNGRTILSREKAVKEELWGQLEIMCSKGEFVDGTIFGRVKGGFTVDLSGVVAF 143

Query: 459 LHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 593
           L  SQ+    + D ++++      K  ILS D++   + +S + +
Sbjct: 144 LPGSQVDVRPIKDPTSIMNIKQPFK--ILSMDKKLDNIVVSRRAI 186

---

>O06147:RS1_MYCTU 30S ribosomal protein S1 - Mycobacterium tuberculosis|
          Length = 481

 Score = 86.7 bits (213), Expect = 1e-16
 Identities = 49/141 (34%), Positives = 81/141 (57%), Gaps = 10/141 (7%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQ----- 371
           GL+ F+P S V  +   +    + KE+  K +E+D+ +  +VLS R  +  +Q++     
Sbjct: 143 GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEF 202

Query: 372 ---LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
              L  G++  G V S+  +GAF+D+GG++GL+HVS++S   +   S V+Q GD + V +
Sbjct: 203 LNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEV 262

Query: 543 LSHDRERGRVSLSTKKLEPTP 605
           L  D +R RVSLS K  +  P
Sbjct: 263 LDVDMDRERVSLSLKATQEDP 283



 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
 Frame = +3

Query: 282 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLG----IGSVVLGTVESLKPYGAFIDIG-G 446
           E+ ++ ++VD ++ R+ LS +    D          IG +V G V  L P+GAF+ +  G
Sbjct: 257 EVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 316

Query: 447 INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 590
           I GL+H+S+++   V     V+  GD   V ++  D ER R+SLS K+
Sbjct: 317 IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQ 364

---

>Q8NWM8:RS1_STAAW 30S ribosomal protein S1 - Staphylococcus aureus (strain MW2)|
          Length = 391

 Score = 86.3 bits (212), Expect = 2e-16
 Identities = 56/147 (38%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ------- 365
           G + FVP S +S+    +  + D + + +K  E+D E  R++LS RKA+   +       
Sbjct: 128 GQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQ 186

Query: 366 --AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
               L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV 
Sbjct: 187 LLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 540 ILSHDRERGRVSLSTKKLEPTPGDMIR 620
           I S DR+  R+SLS K   PTP + I+
Sbjct: 247 IKSIDRDTERISLSIKDTLPTPFENIK 273



 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSK--TTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DS 362
           + G+   V  S++S +   T EE++   +++ +K   +D +  R+ LS +  +     + 
Sbjct: 213 IGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENI 272

Query: 363 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
           + Q     V+ G V  L  +GAF++I  G+ GL+H+S+I+H  +     VL+PG  + V 
Sbjct: 273 KGQFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVK 332

Query: 540 ILSHDRERGRVSLSTKKLEP 599
           IL  D E  RVSLS K   P
Sbjct: 333 ILGIDEENERVSLSIKATLP 352



 Score = 33.5 bits (75), Expect = 1.5
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 542
           G  V G V+ ++     + I G   NG++ +SQ+S   +   S V++ GD ++  +    
Sbjct: 16  GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75

Query: 543 LSHDRERGRVSLSTKKLE 596
              + E G   LS ++LE
Sbjct: 76  FDEENETGAYILSRRQLE 93

---

>Q6G987:RS1_STAAS 30S ribosomal protein S1 - Staphylococcus aureus (strain MSSA476)|
          Length = 391

 Score = 86.3 bits (212), Expect = 2e-16
 Identities = 56/147 (38%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ------- 365
           G + FVP S +S+    +  + D + + +K  E+D E  R++LS RKA+   +       
Sbjct: 128 GQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQ 186

Query: 366 --AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
               L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV 
Sbjct: 187 LLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 540 ILSHDRERGRVSLSTKKLEPTPGDMIR 620
           I S DR+  R+SLS K   PTP + I+
Sbjct: 247 IKSIDRDTERISLSIKDTLPTPFENIK 273



 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSK--TTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DS 362
           + G+   V  S++S +   T EE++   +++ +K   +D +  R+ LS +  +     + 
Sbjct: 213 IGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENI 272

Query: 363 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
           + Q     V+ G V  L  +GAF++I  G+ GL+H+S+I+H  +     VL+PG  + V 
Sbjct: 273 KGQFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVK 332

Query: 540 ILSHDRERGRVSLSTKKLEP 599
           IL  D E  RVSLS K   P
Sbjct: 333 ILGIDEENERVSLSIKATLP 352



 Score = 33.5 bits (75), Expect = 1.5
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 542
           G  V G V+ ++     + I G   NG++ +SQ+S   +   S V++ GD ++  +    
Sbjct: 16  GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75

Query: 543 LSHDRERGRVSLSTKKLE 596
              + E G   LS ++LE
Sbjct: 76  FDEENETGAYILSRRQLE 93

---

>Q6GGT5:RS1_STAAR 30S ribosomal protein S1 - Staphylococcus aureus (strain MRSA252)|
          Length = 391

 Score = 86.3 bits (212), Expect = 2e-16
 Identities = 56/147 (38%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ------- 365
           G + FVP S +S+    +  + D + + +K  E+D E  R++LS RKA+   +       
Sbjct: 128 GQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQ 186

Query: 366 --AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
               L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV 
Sbjct: 187 LLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 540 ILSHDRERGRVSLSTKKLEPTPGDMIR 620
           I S DR+  R+SLS K   PTP + I+
Sbjct: 247 IKSIDRDTERISLSIKDTLPTPFENIK 273



 Score = 64.3 bits (155), Expect = 8e-10
 Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 9/140 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSK--TTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DS 362
           + G+   V  S++S +   T EE++   +++ +K   +D +  R+ LS +  +     + 
Sbjct: 213 IGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENI 272

Query: 363 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
           + Q      + G V  L  +GAF++I  G+ GL+H+S+I+H  +     VL+PG  + V 
Sbjct: 273 KGQFHENDDIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVK 332

Query: 540 ILSHDRERGRVSLSTKKLEP 599
           IL  D E  RVSLS K   P
Sbjct: 333 ILGIDEENERVSLSIKATLP 352



 Score = 33.5 bits (75), Expect = 1.5
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 542
           G  V G V+ ++     + I G   NG++ +SQ+S   +   S V++ GD ++  +    
Sbjct: 16  GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75

Query: 543 LSHDRERGRVSLSTKKLE 596
              + E G   LS ++LE
Sbjct: 76  FDEENETGAYILSRRQLE 93

---

>Q5HFU7:RS1_STAAC 30S ribosomal protein S1 - Staphylococcus aureus (strain COL)|
          Length = 391

 Score = 86.3 bits (212), Expect = 2e-16
 Identities = 56/147 (38%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ------- 365
           G + FVP S +S+    +  + D + + +K  E+D E  R++LS RKA+   +       
Sbjct: 128 GQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQ 186

Query: 366 --AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
               L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV 
Sbjct: 187 LLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVK 246

Query: 540 ILSHDRERGRVSLSTKKLEPTPGDMIR 620
           I S DR+  R+SLS K   PTP + I+
Sbjct: 247 IKSIDRDTERISLSIKDTLPTPFENIK 273



 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSK--TTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DS 362
           + G+   V  S++S +   T EE++   +++ +K   +D +  R+ LS +  +     + 
Sbjct: 213 IGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENI 272

Query: 363 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
           + Q     V+ G V  L  +GAF++I  G+ GL+H+S+I+H  +     VL+PG  + V 
Sbjct: 273 KGQFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVK 332

Query: 540 ILSHDRERGRVSLSTKKLEP 599
           IL  D E  RVSLS K   P
Sbjct: 333 ILGIDEENERVSLSIKATLP 352



 Score = 33.5 bits (75), Expect = 1.5
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 542
           G  V G V+ ++     + I G   NG++ +SQ+S   +   S V++ GD ++  +    
Sbjct: 16  GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75

Query: 543 LSHDRERGRVSLSTKKLE 596
              + E G   LS ++LE
Sbjct: 76  FDEENETGAYILSRRQLE 93

---

>P46836:RS1_MYCLE 30S ribosomal protein S1 - Mycobacterium leprae|
          Length = 481

 Score = 85.9 bits (211), Expect = 2e-16
 Identities = 49/141 (34%), Positives = 81/141 (57%), Gaps = 10/141 (7%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA------ 368
           GL+ F+P S V  +   +    + KE+  K +E+D+ +  +VLS R  +  +Q+      
Sbjct: 143 GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEF 202

Query: 369 --QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
             QL  G++  G V S+  +GAF+D+GG++GL+HVS++S   +   S V+Q G+ + V +
Sbjct: 203 LNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGNEVTVEV 262

Query: 543 LSHDRERGRVSLSTKKLEPTP 605
           L  D +R RVSLS K  +  P
Sbjct: 263 LDVDMDRERVSLSLKATQEDP 283



 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
 Frame = +3

Query: 282 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLG----IGSVVLGTVESLKPYGAFIDIG-G 446
           E+ ++ ++VD ++ R+ LS +    D          IG +V G V  L P+GAF+ +  G
Sbjct: 257 EVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 316

Query: 447 INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 590
           I GL+H+S+++   V     V+  GD   V ++  D ER R+SLS K+
Sbjct: 317 IEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQ 364

---

>Q44653:RS1_BUCAP 30S ribosomal protein S1 - Buchnera aphidicola subsp. Schizaphis|
           graminum
          Length = 559

 Score = 85.5 bits (210), Expect = 3e-16
 Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 10/146 (6%)
 Frame = +3

Query: 216 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA------- 368
           ++AF+P S V  +   +   L  KEL  K +++D+++  +V+S R  +    +       
Sbjct: 127 IRAFLPGSLVDVRPVRDTIHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLL 186

Query: 369 -QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 545
             L  G  + G V++L  YGAF+D+GG++GLLH++ ++  RV   S ++  GD + V IL
Sbjct: 187 ESLQEGIEIKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKIL 246

Query: 546 SHDRERGRVSLSTKKLEPTPGDMIRN 623
             D+ER RVSL  K+L   P   I N
Sbjct: 247 KFDKERTRVSLGLKQLGEDPWIAISN 272



 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
 Frame = +3

Query: 300 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 464
           +++DEE+ R+ L  ++   +   +       G  V G ++S+  +G FI + GGI+GL+H
Sbjct: 333 LDIDEERRRISLGLKQCKINPWQEFSETHKKGIHVSGKIKSITDFGIFIGLKGGIDGLVH 392

Query: 465 VSQISHDRVADISTV--LQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           +S IS  +++    V   + GD +  ++L  D ER R+SL  K+LE  P
Sbjct: 393 LSDISW-KISGEEAVKNYKKGDEISAVVLQVDAERERISLGIKQLEEDP 440



 Score = 32.7 bits (73), Expect = 2.5
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 15/168 (8%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAEELLDK-----ELPLKFVEVDEEQGRLVLSNRKAMADS----Q 365
           G+   V  S +S K + EE +       E+    ++VD E+ R+ L  ++   D      
Sbjct: 386 GIDGLVHLSDISWKISGEEAVKNYKKGDEISAVVLQVDAERERISLGIKQLEEDPFNVYV 445

Query: 366 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
           +    G+++ G ++        + +  G+ G +  S  S     +I   L+  DT+ V I
Sbjct: 446 SNHKKGAIITGIIKDFDKKTVTVKLSDGVEGNIKFSDSSRVNSEEIIKKLKIDDTILVKI 505

Query: 543 LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADE-----MAQIFR 671
            + DR+   ++L+   L+          K+  +  DE     MA+ F+
Sbjct: 506 SNFDRKNRIINLTFHILDENNNKKDLKNKINVKSNDESFSNVMAEAFK 553

---

>P57395:RS1_BUCAI 30S ribosomal protein S1 - Buchnera aphidicola subsp. Acyrthosiphon|
           pisum (Acyrthosiphon pisum symbiotic bacterium)
          Length = 558

 Score = 85.5 bits (210), Expect = 3e-16
 Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 10/140 (7%)
 Frame = +3

Query: 216 LKAFVPFSQVSSKTTAE--ELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQA------- 368
           ++AF+P S V  +   +   L  KEL  K +++D+++  +V+S R  +    +       
Sbjct: 127 IRAFLPGSLVDVRPVRDTIHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLL 186

Query: 369 -QLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 545
             L  G  V G V++L  YGAF+D+GG++GLLH++ ++  RV   S ++  GD + + IL
Sbjct: 187 ENLQEGMHVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINIKIL 246

Query: 546 SHDRERGRVSLSTKKLEPTP 605
             DRER RVSL  K+L   P
Sbjct: 247 KFDRERTRVSLGLKQLGEDP 266



 Score = 54.7 bits (130), Expect = 6e-07
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
 Frame = +3

Query: 300 VEVDEEQGRLVLSNRKAMADSQAQLGI----GSVVLGTVESLKPYGAFIDI-GGINGLLH 464
           +++DEE+ R+ L  ++   +   +       G  VLG ++S+  +G FI + GGI+GL+H
Sbjct: 333 LDIDEERRRISLGLKQCKINPWKEFSETHKKGVHVLGKIKSITDFGIFIGLNGGIDGLVH 392

Query: 465 VSQISHDRVADISTV-LQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           +S IS     + + V  +  D +  ++L  D ER R+SL  K+LE  P
Sbjct: 393 LSDISWTIPGEEAVVKYKKNDEISAVVLQVDAERERISLGIKQLEEDP 440



 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
 Frame = +3

Query: 282 ELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIG----SVVLGTVESLKPYGAFIDIG-G 446
           E+ +K ++ D E+ R+ L  ++   D    +       + + G V +L  YG F++I  G
Sbjct: 240 EINIKILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLSGRVTNLTDYGCFVEIEEG 299

Query: 447 INGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           + GL+HVS++   ++    S V+   D ++VM+L  D ER R+SL  K+ +  P
Sbjct: 300 VEGLVHVSEMDWTNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGLKQCKINP 353

---

>Q5HP69:RS1_STAEQ 30S ribosomal protein S1 - Staphylococcus epidermidis (strain ATCC|
           35984 / RP62A)
          Length = 392

 Score = 83.6 bits (205), Expect = 1e-15
 Identities = 54/147 (36%), Positives = 84/147 (57%), Gaps = 11/147 (7%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAM---------AD 359
           G + FVP S +S+    +  + D + + +K  E+D E  R++LS RKA+         A 
Sbjct: 128 GQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQLENDAKKAS 186

Query: 360 SQAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
               L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G+ +KV 
Sbjct: 187 ILDSLNEGDVIDGKVARLTNFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSVGEAVKVK 246

Query: 540 ILSHDRERGRVSLSTKKLEPTPGDMIR 620
           + S +++  R+SLS K   PTP + I+
Sbjct: 247 VKSVEKDSERISLSIKDTLPTPFENIK 273



 Score = 61.6 bits (148), Expect = 5e-09
 Identities = 41/140 (29%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSK--TTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMA----DS 362
           + G+   V  S++S +   T EE++   + + +K   V+++  R+ LS +  +     + 
Sbjct: 213 IGGVDGLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENI 272

Query: 363 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
           + +     V+ GTV  L  +GAF++I   + GL+H+S+I H  +   + VL+PG  + V 
Sbjct: 273 KGKFHEDDVIEGTVVRLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVK 332

Query: 540 ILSHDRERGRVSLSTKKLEP 599
           IL  D +  R+SLS K   P
Sbjct: 333 ILGIDEDNERISLSIKATLP 352



 Score = 32.7 bits (73), Expect = 2.5
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 542
           G  V G V+ ++     + I G   NG++ +SQ+S   + + S V++ GD ++  +    
Sbjct: 16  GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAYVTKIE 75

Query: 543 LSHDRERGRVSLSTKKLE 596
              + + G   LS ++LE
Sbjct: 76  FDEENDTGAYILSKRQLE 93

---

>Q4L6I1:RS1_STAHJ 30S ribosomal protein S1 - Staphylococcus haemolyticus (strain|
           JCSC1435)
          Length = 392

 Score = 82.8 bits (203), Expect = 2e-15
 Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKTTAE-ELLDKE-LPLKFVEVDEEQGRLVLSNRKAMADSQ------- 365
           G + FVP S +S+    +  + D + + +K  E+D E  R++LS RKA+  ++       
Sbjct: 128 GQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQAENDVKKAS 186

Query: 366 --AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
               L  G V+ G V  L  +GAF+DIGG++GL+HVS++SH+ V     V+  G  + V 
Sbjct: 187 LLESLNAGDVIKGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVDSPEDVVSVGQEVDVK 246

Query: 540 ILSHDRERGRVSLSTKKLEPTPGDMIR 620
           + S +++  R+SLS K   PTP + I+
Sbjct: 247 VKSVEKDAERISLSIKDTLPTPFESIK 273



 Score = 61.6 bits (148), Expect = 5e-09
 Identities = 41/140 (29%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSK--TTAEELLD--KELPLKFVEVDEEQGRLVLSNRKAMADS---- 362
           + G+   V  S++S +   + E+++   +E+ +K   V+++  R+ LS +  +       
Sbjct: 213 IGGVDGLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESI 272

Query: 363 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
           + Q     V+ G V  L  +GAF++I  G+ GL+H+S+I+H+ +      L+PG  + V 
Sbjct: 273 KGQFHEDDVIEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVK 332

Query: 540 ILSHDRERGRVSLSTKKLEP 599
           IL  D E  R+SLS K   P
Sbjct: 333 ILGIDEENERISLSIKATLP 352



 Score = 33.1 bits (74), Expect = 1.9
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQPGDTLKVMI---- 542
           G  V G V+ ++     + I G   NG++ +SQ+S   + + S V++ GD ++  +    
Sbjct: 16  GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAYVTKIE 75

Query: 543 LSHDRERGRVSLSTKKLE 596
           +  + + G   LS ++LE
Sbjct: 76  VDEENDSGVYILSKRQLE 93

---

>Q9Z8M3:RS1_CHLPN 30S ribosomal protein S1 - Chlamydia pneumoniae (Chlamydophila|
           pneumoniae)
          Length = 580

 Score = 81.6 bits (200), Expect = 5e-15
 Identities = 45/145 (31%), Positives = 86/145 (59%), Gaps = 10/145 (6%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKT--TAEELLDKELPLKFVEVDEEQGRLVLSNRKAM--------ADS 362
           G++AF+P SQ+ +K     ++ + K    K ++++ E+  +V+S R+ +        A+ 
Sbjct: 154 GMEAFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVERRNIVVSRRELLEAERISKKAEL 213

Query: 363 QAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
             Q+ IG    G V+++  +G F+D+ GI+GLLH++ ++  R+   S +++    L+V+I
Sbjct: 214 IEQISIGEYRKGVVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVII 273

Query: 543 LSHDRERGRVSLSTKKLEPTPGDMI 617
           LS D+E+GRV+L  K+ E  P + I
Sbjct: 274 LSVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 73.9 bits (180), Expect = 1e-12
 Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
 Frame = +3

Query: 273 LDKELPLKFVEVDEEQGRLVLSNRKA----MADSQAQLGIGSVVLGTVESLKPYGAFIDI 440
           L++EL +  + VD+E+GR+ L  ++       D + +   G  VLG +  L PYGAFI+I
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVLGKIVKLLPYGAFIEI 324

Query: 441 -GGINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDM 614
             GI GL+H+S++S    + D S V+  GD ++ ++LS  ++ G++SL  K+ E  P D 
Sbjct: 325 EEGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNPWDN 384

Query: 615 I 617
           I
Sbjct: 385 I 385



 Score = 58.5 bits (140), Expect = 4e-08
 Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAEELLDKELPLKFV--EVDEEQGRLVLSNRKAMADS----QA 368
           +EGL      S +   +   EL  K   ++ V   VD+E  ++ L  ++  ++     +A
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNEIEA 474

Query: 369 QLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 545
               G+V+ G V  +  +GAF+++  GI GL+HVS++S    A I  ++  G+ +   ++
Sbjct: 475 MFPAGTVISGVVTKITAFGAFVELQNGIEGLIHVSELSDKPFAKIEDIISIGENVSAKVI 534

Query: 546 SHDRERGRVSLSTKK 590
             D +  +VSLS K+
Sbjct: 535 KLDPDHKKVSLSVKE 549



 Score = 57.0 bits (136), Expect = 1e-07
 Identities = 39/145 (26%), Positives = 80/145 (55%), Gaps = 8/145 (5%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAEELLDK--ELPLKFVEVDEEQGRLVL----SNRKAMADSQA 368
           +EGL      S V +     E+++K  E+    + + +++G++ L    + R    + + 
Sbjct: 328 IEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNPWDNIEE 387

Query: 369 QLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMI 542
           +  IG  V   +++L  YGAF+++  GI GL+H+S +S   +V+  S + + G++++ +I
Sbjct: 388 KYPIGLHVNAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVI 447

Query: 543 LSHDRERGRVSLSTKKLEPTPGDMI 617
           LS D+E  +++L  K+L   P + I
Sbjct: 448 LSVDKESKKITLGVKQLSSNPWNEI 472



 Score = 38.5 bits (88), Expect = 0.045
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
 Frame = +3

Query: 270 LLDKELPLKFVEVDEEQGRLVLSNRKAMADSQ-----AQLGIGSVVLGTVESLKPYGAFI 434
           +L  E+ +   + ++E+G++VLS  KA    Q     A    GS+V G +      G  +
Sbjct: 92  VLGAEVEVYLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIV 151

Query: 435 DIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 593
           DI G+   L  SQI + ++ ++   +  G   +  IL  + ER  + +S ++L
Sbjct: 152 DI-GMEAFLPGSQIDNKKIKNLDDYV--GKVCEFKILKINVERRNIVVSRREL 201

---

>Q97I09:ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase - Clostridium|
           acetobutylicum
          Length = 642

 Score = 81.3 bits (199), Expect = 6e-15
 Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 12/147 (8%)
 Frame = +3

Query: 201 ALVEGLKAFVPFSQVS--SKTTAEELLDKELPLKFVEVD--EEQGRLVLSNRKAMADSQA 368
           A  +G++ F+P S V        +E + K   +  +E    + Q ++V S R  ++  + 
Sbjct: 412 ASYKGIRIFIPASHVELFHVDNLKEYIGKSFDVAIIEYSTKKRQTKIVASRRALLSKEKE 471

Query: 369 Q--------LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGD 524
           +        L  G VV G V+ L  +GAF++I G++GLLHVS+IS  RV   + VL+ GD
Sbjct: 472 KVEETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGVDGLLHVSEISWGRVEKPADVLKIGD 531

Query: 525 TLKVMILSHDRERGRVSLSTKKLEPTP 605
            +KV +LS D+E  ++SLS KKL   P
Sbjct: 532 KIKVYVLSVDKENKKLSLSVKKLTENP 558



 Score = 66.6 bits (161), Expect = 2e-10
 Identities = 42/139 (30%), Positives = 75/139 (53%), Gaps = 9/139 (6%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVS----SKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADS---- 362
           +EG+   +  S++S     K      +  ++ +  + VD+E  +L LS +K   +     
Sbjct: 503 IEGVDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKKLSLSVKKLTENPWNNV 562

Query: 363 QAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
           + +  +GSVVLG V     +GAF+ +  G++GL+H+S+ISH R+A  S  L  G+ +K  
Sbjct: 563 EEKYPVGSVVLGKVIRFADFGAFVKLEPGVDGLVHISEISHKRIAKPSDALNVGEEIKAK 622

Query: 540 ILSHDRERGRVSLSTKKLE 596
           IL    E  ++ LS +++E
Sbjct: 623 ILEVSSEEKKIGLSIREVE 641

---

>O84100:RS1_CHLTR 30S ribosomal protein S1 - Chlamydia trachomatis|
          Length = 569

 Score = 78.2 bits (191), Expect = 5e-14
 Identities = 44/145 (30%), Positives = 86/145 (59%), Gaps = 10/145 (6%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKT--TAEELLDKELPLKFVEVDEEQGRLVLSNRKAM--------ADS 362
           G++AF+P SQ+ +K     ++ + K    K ++++ ++  +V+S R+ +        A+ 
Sbjct: 154 GMEAFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAEL 213

Query: 363 QAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
             Q+ IG    G V+++  +G F+D+ GI+GLLH++ ++  R+   S +++    L+V+I
Sbjct: 214 IEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVII 273

Query: 543 LSHDRERGRVSLSTKKLEPTPGDMI 617
           LS D+E+GRV+L  K+ E  P + I
Sbjct: 274 LSVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 70.9 bits (172), Expect = 8e-12
 Identities = 43/121 (35%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
 Frame = +3

Query: 273 LDKELPLKFVEVDEEQGRLVLSNRKA----MADSQAQLGIGSVVLGTVESLKPYGAFIDI 440
           L++EL +  + VD+E+GR+ L  ++       D + +   G  V G +  L PYGAFI+I
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI 324

Query: 441 -GGINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDM 614
             GI GL+HVS++S    + D + V+  GD ++V++LS  ++ G++SL  K+ +  P D 
Sbjct: 325 EEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDN 384

Query: 615 I 617
           I
Sbjct: 385 I 385



 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 41/145 (28%), Positives = 82/145 (56%), Gaps = 8/145 (5%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAEELLDK--ELPLKFVEVDEEQGRLVLSNRKAMADS----QA 368
           +EGL      S V +     E+++K  E+ +  + + +++G++ L  ++   +     + 
Sbjct: 328 IEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEE 387

Query: 369 QLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMI 542
           +  IG  V   +++L  YGAF+++  GI GL+H+S +S   +V+  S + + G+T++ +I
Sbjct: 388 KYPIGLRVTAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVI 447

Query: 543 LSHDRERGRVSLSTKKLEPTPGDMI 617
           LS D+E  +++L  K+L P P D I
Sbjct: 448 LSVDKESKKITLGVKQLTPNPWDEI 472



 Score = 59.7 bits (143), Expect = 2e-08
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAEELLDKELPLKFV--EVDEEQGRLVLSNRKAMADS----QA 368
           +EGL      S +   +   EL  K   ++ V   VD+E  ++ L  ++   +     + 
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEV 474

Query: 369 QLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 545
              +GS + G V  +  +GAF+++  GI GL+HVS++S    A I  VL  GD +   ++
Sbjct: 475 MFPVGSDISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIEDVLSIGDKVSAKVI 534

Query: 546 SHDRERGRVSLSTKKLEPTPGD 611
             D +  +VSLS K+     GD
Sbjct: 535 KLDPDHKKVSLSIKEFLVHGGD 556

---

>P38016:RS1_CHLMU 30S ribosomal protein S1 - Chlamydia muridarum|
          Length = 570

 Score = 78.2 bits (191), Expect = 5e-14
 Identities = 44/145 (30%), Positives = 86/145 (59%), Gaps = 10/145 (6%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSKT--TAEELLDKELPLKFVEVDEEQGRLVLSNRKAM--------ADS 362
           G++AF+P SQ+ +K     ++ + K    K ++++ ++  +V+S R+ +        A+ 
Sbjct: 154 GMEAFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAEL 213

Query: 363 QAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
             Q+ IG    G V+++  +G F+D+ GI+GLLH++ ++  R+   S +++    L+V+I
Sbjct: 214 IEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVII 273

Query: 543 LSHDRERGRVSLSTKKLEPTPGDMI 617
           LS D+E+GRV+L  K+ E  P + I
Sbjct: 274 LSVDKEKGRVALGLKQKEHNPWEDI 298



 Score = 72.4 bits (176), Expect = 3e-12
 Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
 Frame = +3

Query: 273 LDKELPLKFVEVDEEQGRLVLSNRKA----MADSQAQLGIGSVVLGTVESLKPYGAFIDI 440
           L++EL +  + VD+E+GR+ L  ++       D + +   G  V G +  L PYGAFI+I
Sbjct: 265 LNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI 324

Query: 441 -GGINGLLHVSQISH-DRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDM 614
             GI GL+HVS++S    + D + V+  GD ++V++LS  ++ G++SL  K+ E  P D 
Sbjct: 325 EEGIEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNPWDN 384

Query: 615 I 617
           I
Sbjct: 385 I 385



 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 41/145 (28%), Positives = 82/145 (56%), Gaps = 8/145 (5%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAEELLDK--ELPLKFVEVDEEQGRLVLSNRKAMADS----QA 368
           +EGL      S V +     E+++K  E+ +  + + +++G++ L  ++   +     + 
Sbjct: 328 IEGLIHVSEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNPWDNIEE 387

Query: 369 QLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISH-DRVADISTVLQPGDTLKVMI 542
           +  IG  V   +++L  YGAF+++  GI GL+H+S +S   +V+  S + + G+T++ +I
Sbjct: 388 KYPIGLRVTAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVI 447

Query: 543 LSHDRERGRVSLSTKKLEPTPGDMI 617
           LS D+E  +++L  K+L P P D I
Sbjct: 448 LSVDKESKKITLGVKQLTPNPWDEI 472



 Score = 58.5 bits (140), Expect = 4e-08
 Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAEELLDKELPLKFV--EVDEEQGRLVLSNRKAMADS----QA 368
           +EGL      S +   +   EL  K   ++ V   VD+E  ++ L  ++   +     +A
Sbjct: 415 IEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLGVKQLTPNPWDEIEA 474

Query: 369 QLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 545
              +GS + G V  +  +GAF+++  GI GL+HVS++S    A I  +L  GD +   ++
Sbjct: 475 MFPVGSDISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIEDILSIGDKVSAKVI 534

Query: 546 SHDRERGRVSLSTKK 590
             D +  +VSLS K+
Sbjct: 535 KLDPDHKKVSLSIKE 549



 Score = 36.6 bits (83), Expect = 0.17
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
 Frame = +3

Query: 282 ELPLKFVEVDEEQGRLVLSNRKAMADSQ-----AQLGIGSVVLGTVESLKPYGAFIDIGG 446
           E+ +   + ++E+G++VLS  KA    Q     A    GS+V G +      G  +DI G
Sbjct: 96  EVEVYLDQTEDEEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI-G 154

Query: 447 INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 593
           +   L  SQI + ++ ++   +  G   +  IL  + +R  V +S ++L
Sbjct: 155 MEAFLPGSQIDNKKIKNLDDYV--GKVCEFKILKINVDRRNVVVSRREL 201

---

>Q895G2:ISPH_CLOTE 4-hydroxy-3-methylbut-2-enyl diphosphate reductase - Clostridium|
           tetani
          Length = 635

 Score = 70.5 bits (171), Expect = 1e-11
 Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 12/142 (8%)
 Frame = +3

Query: 216 LKAFVPFSQVSSKTTAEELLDK--ELPLKFVEVDEEQG--RLVLSNRKAMADSQAQ---- 371
           ++ F+P S V  +   +  + K  EL +  +E +E +   R+V S R  + + Q++    
Sbjct: 409 VRVFIPASHVELRHVDDLSIYKGCELTVNIIEFEEGRNNTRIVASRRDLLKEEQSKVEEE 468

Query: 372 ----LGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVM 539
               L   ++  G V  L  +GAF++I G++GLLHVS+IS  RV   S +L+ GD +KV 
Sbjct: 469 TWSSLEKDTIKEGEVRRLTDFGAFVNINGVDGLLHVSEISWGRVEKPSDMLKVGDKIKVY 528

Query: 540 ILSHDRERGRVSLSTKKLEPTP 605
           I   D+++ +++LS K L   P
Sbjct: 529 IKDIDKDKKKLALSIKDLTKDP 550



 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 34/102 (33%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
 Frame = +3

Query: 303 EVDEEQGRLVLS----NRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHV 467
           ++D+++ +L LS     +    D + +  +G++VLGTV     +GAF+++  G++GL+H+
Sbjct: 531 DIDKDKKKLALSIKDLTKDPWKDVEVKYPVGNIVLGTVVRFASFGAFVELEPGVDGLIHI 590

Query: 468 SQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKL 593
           SQISH RV  +   L  G+ +K  I+  D E+ ++ LS K++
Sbjct: 591 SQISHKRVDRVEDELSIGEQVKAKIVEVDGEKRKIGLSIKEV 632

---

>Q9ZKF6:RS1_HELPJ 30S ribosomal protein S1 - Helicobacter pylori J99 (Campylobacter|
           pylori J99)
          Length = 552

 Score = 64.7 bits (156), Expect = 6e-10
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 10/168 (5%)
 Frame = +3

Query: 210 EGLKAFVPFSQVSSK--TTAEELLDK--ELPLKFVEVDEEQGRLVLSNRKAMADS----Q 365
           +G+   V +S++S K     E+   +  E+ +K +  DEE+ RL LS +  + D     Q
Sbjct: 220 KGIDGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIKATIEDPWEEIQ 279

Query: 366 AQLGIGSVVLGTVESLKPYGAFIDIGG-INGLLHVSQISHDR-VADISTVLQPGDTLKVM 539
            +L  G  +   V +++ YG F+DIG  I G LHVS+IS D+ V+  S  L  G  + V 
Sbjct: 280 DKLKPGYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVK 339

Query: 540 ILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIA 683
           I+  D +  R+ +S K+L   P D       VFE   ++  I   ++A
Sbjct: 340 IIDIDPKNRRLRVSLKQLTNRPFD-------VFESKHQVGDIVEGKVA 380



 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 8/146 (5%)
 Frame = +3

Query: 210 EGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAM-ADSQAQLGIGS 386
           +G++ F+  S  S K  A  +  K +    + VD+E   + +S ++    + + QL I  
Sbjct: 136 QGVEYFLSRSHSSLKNDANHI-GKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISK 194

Query: 387 V-------VLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 545
                   VLG V  + P+G F+   GI+GL+H S+ISH    +     + GD + V  +
Sbjct: 195 ELLEATEPVLGVVRQITPFGIFVKFKGIDGLVHYSEISHKGPVNPEKYYKEGDEVYVKAI 254

Query: 546 SHDRERGRVSLSTKKLEPTPGDMIRN 623
           ++D E+ R+SLS K     P + I++
Sbjct: 255 AYDEEKRRLSLSIKATIEDPWEEIQD 280



 Score = 59.7 bits (143), Expect = 2e-08
 Identities = 35/115 (30%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
 Frame = +3

Query: 279 KELPLKFVEVDEEQGRLVLSNRKA------MADSQAQLGIGSVVLGTVESLKPYGAFIDI 440
           +E+ +K +++D +  RL +S ++       + +S+ Q  +G +V G V +L  +GAF+++
Sbjct: 334 QEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKHQ--VGDIVEGKVATLTDFGAFLNL 391

Query: 441 GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           GG++GLLH      D+        + GD +KV IL  +++  ++SLS K L  +P
Sbjct: 392 GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLVTSP 446

---

>P80870:GS13_BACSU General stress protein 13 - Bacillus subtilis|
          Length = 130

 Score = 63.5 bits (153), Expect = 1e-09
 Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
 Frame = +3

Query: 366 AQLGIGSVVLGTVESLKPYGAFIDIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
           A+  +GSV  G V  L+ YGAF+ +     GL+H+S+++H  V DI+  L  GD ++V +
Sbjct: 3   AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKV 62

Query: 543 LSHDRERGRVSLSTKKLEPTPGDMIRNPK 629
           L+ D E+G++SLS +  +  P      P+
Sbjct: 63  LAVDEEKGKISLSIRATQAAPEKKESKPR 91

---

>P56008:RS1_HELPY 30S ribosomal protein S1 - Helicobacter pylori (Campylobacter|
           pylori)
          Length = 556

 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 8/146 (5%)
 Frame = +3

Query: 210 EGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLS--------NRKAMADSQ 365
           +G++ F+  S  S K  A  +  K +    + VD+E   + +S        +++ +  S+
Sbjct: 140 QGVEYFLSRSHSSLKNDANHI-GKRVKACIIRVDKENHSINISRKRFFEVNDKRQLEVSK 198

Query: 366 AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 545
             L     VLG V  + P+G F++  GI GL+H S+ISH    +     + GD + V  +
Sbjct: 199 ELLEATEPVLGVVRQITPFGIFVEAKGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAI 258

Query: 546 SHDRERGRVSLSTKKLEPTPGDMIRN 623
           ++D E+ R+SLS K     P + I++
Sbjct: 259 AYDAEKRRLSLSIKATIEDPWEEIQD 284



 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 10/168 (5%)
 Frame = +3

Query: 210 EGLKAFVPFSQVSSK--TTAEELLDK--ELPLKFVEVDEEQGRLVLSNRKAMADS----Q 365
           +G++  V +S++S K     E+   +  E+ +K +  D E+ RL LS +  + D     Q
Sbjct: 224 KGIEGLVHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDAEKRRLSLSIKATIEDPWEEIQ 283

Query: 366 AQLGIGSVVLGTVESLKPYGAFIDIGG-INGLLHVSQISHDR-VADISTVLQPGDTLKVM 539
            +L  G  +   V +++ YG F+DIG  I G LHVS+IS D+ V+  +  L  G  + V 
Sbjct: 284 DKLKPGYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPNNYLSVGQEIDVK 343

Query: 540 ILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIA 683
           I+  D +  R+ +S K+L   P D       VFE   ++  +   ++A
Sbjct: 344 IIDIDPKNRRLRVSLKQLTNRPFD-------VFESKHQVGDVLEGKVA 384



 Score = 58.9 bits (141), Expect = 3e-08
 Identities = 35/115 (30%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
 Frame = +3

Query: 279 KELPLKFVEVDEEQGRLVLSNRKA------MADSQAQLGIGSVVLGTVESLKPYGAFIDI 440
           +E+ +K +++D +  RL +S ++       + +S+ Q  +G V+ G V +L  +GAF+++
Sbjct: 338 QEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKHQ--VGDVLEGKVATLTDFGAFLNL 395

Query: 441 GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
           GG++GLLH      D+        + GD +KV IL  +++  ++SLS K L  +P
Sbjct: 396 GGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLVTSP 450

---

>Q9HV59:PNP_PSEAE Polyribonucleotide nucleotidyltransferase - Pseudomonas aeruginosa|
          Length = 701

 Score = 61.6 bits (148), Expect = 5e-09
 Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
 Frame = +3

Query: 366 AQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
           A+  IG + +G VE +  +GAF++I  G +GL+H+SQIS  R+  ++ VLQ G  +KV++
Sbjct: 618 AEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDKRIDKVTDVLQEGQEVKVLV 677

Query: 543 LSHDRERGRVSLSTK 587
           L  D  RGR+ LS K
Sbjct: 678 LDVD-NRGRIKLSIK 691

---

>P46837:YHGF_ECOLI Protein yhgF - Escherichia coli|
          Length = 773

 Score = 58.2 bits (139), Expect = 6e-08
 Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDR 557
           G ++ G V ++  +GAF+DIG   +GL+H+S +S+  V D  TV++ GD +KV +L  D 
Sbjct: 651 GMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDL 710

Query: 558 ERGRVSLSTKKLEPTPGD 611
           +R R++L T +L+  PG+
Sbjct: 711 QRKRIAL-TMRLDEQPGE 727

---

>Q8CST1:PNP_STAES Polyribonucleotide nucleotidyltransferase - Staphylococcus|
           epidermidis (strain ATCC 12228)
          Length = 701

 Score = 57.8 bits (138), Expect = 7e-08
 Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = +3

Query: 342 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 518
           ++ + D   +  +G V    V+ ++ YGAF+++  G + LLH+SQIS +R+  +  VL+ 
Sbjct: 613 KEIIEDITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISQERINKVEDVLKI 672

Query: 519 GDTLKVMILSHDRERGRVSLSTKKLE 596
           GDT++V I   D++ GRV+ S K LE
Sbjct: 673 GDTIEVKITEIDKQ-GRVNASHKVLE 697

---

>Q5HPR7:PNP_STAEQ Polyribonucleotide nucleotidyltransferase - Staphylococcus|
           epidermidis (strain ATCC 35984 / RP62A)
          Length = 701

 Score = 57.8 bits (138), Expect = 7e-08
 Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = +3

Query: 342 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 518
           ++ + D   +  +G V    V+ ++ YGAF+++  G + LLH+SQIS +R+  +  VL+ 
Sbjct: 613 KEIIEDITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISQERINKVEDVLKI 672

Query: 519 GDTLKVMILSHDRERGRVSLSTKKLE 596
           GDT++V I   D++ GRV+ S K LE
Sbjct: 673 GDTIEVKITEIDKQ-GRVNASHKVLE 697

---

>P41121:PNP_PHOLU Polyribonucleotide nucleotidyltransferase - Photorhabdus|
           luminescens (Xenorhabdus luminescens)
          Length = 709

 Score = 57.8 bits (138), Expect = 7e-08
 Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
 Frame = +3

Query: 255 TTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFI 434
           TT E  ++ +  +K    D E+ +  +S    + +  A++ +G +  G V  +  +GAF+
Sbjct: 585 TTIE--IEDDGTVKIAATDGEKAKHAISR---IEEITAEIEVGRIYAGKVTRIVDFGAFV 639

Query: 435 DIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGD 611
            IGG   GL+H+SQI+  RV  ++  LQ G    V +L  DR+ GRV LS K  E T G 
Sbjct: 640 AIGGGKEGLVHISQIADKRVEKVADYLQVGQETSVKVLEIDRQ-GRVRLSIK--EATAGT 696

Query: 612 MI 617
            +
Sbjct: 697 AV 698

---

>P44584:PNP_HAEIN Polyribonucleotide nucleotidyltransferase - Haemophilus influenzae|
          Length = 709

 Score = 57.8 bits (138), Expect = 7e-08
 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
 Frame = +3

Query: 273 LDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGI 449
           +D +  +K   VD    + V+   + +    A++  G +  G V  L  +GAF+ I G  
Sbjct: 588 IDDDGTVKIAAVDSNAAKNVMGRIEEIV---AEVEAGVIYKGKVTRLADFGAFVAIVGNK 644

Query: 450 NGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEP 599
            GL+H+SQI+ +RV  +S  LQ G  + V ++  DR+ GR+ L+ K L P
Sbjct: 645 EGLVHISQIAEERVEKVSDYLQVGQEVNVKVVEIDRQ-GRIRLTMKDLAP 693

---

>Q09530:MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5|
           - Caenorhabditis elegans
          Length = 1200

 Score = 57.8 bits (138), Expect = 7e-08
 Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
 Frame = +3

Query: 378 IGSVVLGTVESLKPYGAFIDIGGIN----GLLHVSQISHDRVADISTVLQPGDTLKVMIL 545
           IG +  G V S++ +GAFI + G      GL+H+SQI ++RV  ++ VL+ G+ +KV + 
Sbjct: 233 IGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIRNERVQTVADVLKRGENVKVKV- 291

Query: 546 SHDRERGRVSLSTKKLEPTPGDMIRNPK 629
            +  E G++SLS K+++   G+ + NP+
Sbjct: 292 -NKIENGKISLSMKEVDQNSGEDL-NPR 317

---

>P37560:YABR_BACSU Uncharacterized protein yabR - Bacillus subtilis|
          Length = 128

 Score = 57.4 bits (137), Expect = 9e-08
 Identities = 31/93 (33%), Positives = 59/93 (63%), Gaps = 4/93 (4%)
 Frame = +3

Query: 378 IGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD 554
           +GS + G +  +  +GAF+++ GG  GL+H+S+++ + V DI+  L+ GD ++V +++ +
Sbjct: 5   VGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVE 64

Query: 555 RERGRVSLSTKKLEPTPGDMIRN---PKLVFEK 644
           ++ G++ LS KK +  P    RN   PK  FE+
Sbjct: 65  KD-GKIGLSIKKAKDRPQARPRNDFRPKESFEQ 96

---

>Q51152:YHGF_NEIMB Uncharacterized protein NMB0075 - Neisseria meningitidis serogroup|
           B
          Length = 757

 Score = 57.0 bits (136), Expect = 1e-07
 Identities = 31/82 (37%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = +3

Query: 366 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
           + L +G ++ G V ++  +GAF+DIG   +GL+H+S +S+  V D   V++ GD +KV +
Sbjct: 635 SDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKV 694

Query: 543 LSHDRERGRVSLSTKKLEPTPG 608
           L  D  R R++L T +L+  PG
Sbjct: 695 LEVDAARKRIAL-TMRLDDEPG 715

---

>P57072:YHGF_NEIMA Uncharacterized protein NMA0194 - Neisseria meningitidis serogroup|
           A
          Length = 757

 Score = 57.0 bits (136), Expect = 1e-07
 Identities = 31/82 (37%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = +3

Query: 366 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
           + L +G ++ G V ++  +GAF+DIG   +GL+H+S +S+  V D   V++ GD +KV +
Sbjct: 635 SDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKV 694

Query: 543 LSHDRERGRVSLSTKKLEPTPG 608
           L  D  R R++L T +L+  PG
Sbjct: 695 LEVDAARKRIAL-TMRLDDEPG 715

---

>P05055:PNP_ECOLI Polyribonucleotide nucleotidyltransferase - Escherichia coli|
          Length = 711

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
 Frame = +3

Query: 255 TTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFI 434
           TT E  ++ +  +K    D E+ +  +   + + +  A++ +G V  G V  +  +GAF+
Sbjct: 585 TTIE--IEDDGTVKIAATDGEKAKHAI---RRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639

Query: 435 DIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKK 590
            IGG   GL+H+SQI+  RV  ++  LQ G  + V +L  DR+ GR+ LS K+
Sbjct: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKE 691

---

>Q8RI52:ISPH_FUSNN 4-hydroxy-3-methylbut-2-enyl diphosphate reductase - Fusobacterium|
           nucleatum subsp. nucleatum
          Length = 827

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 32/100 (32%), Positives = 53/100 (53%)
 Frame = +3

Query: 366 AQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMIL 545
           A L +G +V   V  +  +G  +DI  + G +H+S++S  R+  +S   + GD +K +++
Sbjct: 472 AGLAVGQIVDCVVTEVLDFGLAVDINTLKGFIHISEVSWKRLDKLSDNYKVGDKIKAVVV 531

Query: 546 SHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQI 665
           S D  +  V LS KKLE  P   + N    F+  DE+  I
Sbjct: 532 SLDEAKRNVKLSIKKLEEDPWATVANE---FKVDDEIEGI 568



 Score = 47.8 bits (112), Expect = 7e-05
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
 Frame = +3

Query: 207 VEGLKAFVPFSQVSSKTTAEELLDK-----ELPLKFVEVDEEQGRLVLSNRKAMADSQAQ 371
           +  LK F+  S+VS K   ++L D      ++    V +DE +  + LS +K   D  A 
Sbjct: 496 INTLKGFIHISEVSWKRL-DKLSDNYKVGDKIKAVVVSLDEAKRNVKLSIKKLEEDPWAT 554

Query: 372 LG----IGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQIS-HDRVADISTVLQPGDTLK 533
           +     +   + G V  + PYGAF++I  G+ GL+H+S  S   +  +++  ++  + +K
Sbjct: 555 VANEFKVDDEIEGIVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVADYVKEREKIK 614

Query: 534 VMILSHDRERGRVSLSTKKLEPTP 605
           V I     E  ++ L  K+L   P
Sbjct: 615 VRITDLHPEDRKLKLGIKQLVANP 638



 Score = 47.8 bits (112), Expect = 7e-05
 Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 9/172 (5%)
 Frame = +3

Query: 204  LVEGLKAFVPFSQVSSKTTAEEL----LDKELPLKFVEVD----EEQGRLVLSNRKAMAD 359
            + +G+ AFV  S  +     EE+    +  E+ LK  E+D    + +G L    +     
Sbjct: 668  IADGIDAFVHSSDYN--WVGEEIPKFEIGNEVELKITELDLNNKKIKGSLKALRKSPWEH 725

Query: 360  SQAQLGIGSVVLGTVESLKPYGAFID-IGGINGLLHVSQISHDRVADISTVLQPGDTLKV 536
            +  +  +G+ V   ++++  +G FI+ I GI+G +     S + + +I      GD +K 
Sbjct: 726  AMEEYKVGTTVEKKIKTVADFGLFIELIKGIDGFIPTQFASKEFIKNIRDKFSEGDVVKA 785

Query: 537  MILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQAE 692
             ++  ++E  ++ LS KK+E           +  EK +E  QI +   + +E
Sbjct: 786  QVVEVNKETQKIKLSIKKIE-----------IEEEKREEREQIEKYSTSSSE 826

---

>Q8NWY9:PNP_STAAW Polyribonucleotide nucleotidyltransferase - Staphylococcus aureus|
           (strain MW2)
          Length = 698

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +3

Query: 342 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 518
           R+ + +   +  +G     TV+ ++ YGAF+ +  G + LLH+SQIS +R+  +  VL+ 
Sbjct: 613 REIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKI 672

Query: 519 GDTLKVMILSHDRERGRVSLSTKKLE 596
           GDT++V I   D++ GRV+ S + LE
Sbjct: 673 GDTIEVKITEIDKQ-GRVNASHRALE 697

---

>Q6G9T9:PNP_STAAS Polyribonucleotide nucleotidyltransferase - Staphylococcus aureus|
           (strain MSSA476)
          Length = 698

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +3

Query: 342 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 518
           R+ + +   +  +G     TV+ ++ YGAF+ +  G + LLH+SQIS +R+  +  VL+ 
Sbjct: 613 REIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKI 672

Query: 519 GDTLKVMILSHDRERGRVSLSTKKLE 596
           GDT++V I   D++ GRV+ S + LE
Sbjct: 673 GDTIEVKITEIDKQ-GRVNASHRALE 697

---

>Q6GHG1:PNP_STAAR Polyribonucleotide nucleotidyltransferase - Staphylococcus aureus|
           (strain MRSA252)
          Length = 698

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +3

Query: 342 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 518
           R+ + +   +  +G     TV+ ++ YGAF+ +  G + LLH+SQIS +R+  +  VL+ 
Sbjct: 613 REIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKI 672

Query: 519 GDTLKVMILSHDRERGRVSLSTKKLE 596
           GDT++V I   D++ GRV+ S + LE
Sbjct: 673 GDTIEVKITEIDKQ-GRVNASHRALE 697

---

>Q7A5X7:PNP_STAAN Polyribonucleotide nucleotidyltransferase - Staphylococcus aureus|
           (strain N315)
          Length = 698

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +3

Query: 342 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 518
           R+ + +   +  +G     TV+ ++ YGAF+ +  G + LLH+SQIS +R+  +  VL+ 
Sbjct: 613 REIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKI 672

Query: 519 GDTLKVMILSHDRERGRVSLSTKKLE 596
           GDT++V I   D++ GRV+ S + LE
Sbjct: 673 GDTIEVKITEIDKQ-GRVNASHRALE 697

---

>Q99UJ8:PNP_STAAM Polyribonucleotide nucleotidyltransferase - Staphylococcus aureus|
           (strain Mu50 / ATCC 700699)
          Length = 698

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +3

Query: 342 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 518
           R+ + +   +  +G     TV+ ++ YGAF+ +  G + LLH+SQIS +R+  +  VL+ 
Sbjct: 613 REIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKI 672

Query: 519 GDTLKVMILSHDRERGRVSLSTKKLE 596
           GDT++V I   D++ GRV+ S + LE
Sbjct: 673 GDTIEVKITEIDKQ-GRVNASHRALE 697

---

>Q5HGF7:PNP_STAAC Polyribonucleotide nucleotidyltransferase - Staphylococcus aureus|
           (strain COL)
          Length = 698

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +3

Query: 342 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 518
           R+ + +   +  +G     TV+ ++ YGAF+ +  G + LLH+SQIS +R+  +  VL+ 
Sbjct: 613 REIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKI 672

Query: 519 GDTLKVMILSHDRERGRVSLSTKKLE 596
           GDT++V I   D++ GRV+ S + LE
Sbjct: 673 GDTIEVKITEIDKQ-GRVNASHRALE 697

---

>Q2YXP2:PNP_STAAB Polyribonucleotide nucleotidyltransferase - Staphylococcus aureus|
           (strain bovine RF122)
          Length = 698

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +3

Query: 342 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 518
           R+ + +   +  +G     TV+ ++ YGAF+ +  G + LLH+SQIS +R+  +  VL+ 
Sbjct: 613 REIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKI 672

Query: 519 GDTLKVMILSHDRERGRVSLSTKKLE 596
           GDT++V I   D++ GRV+ S + LE
Sbjct: 673 GDTIEVKITEIDKQ-GRVNASHRALE 697

---

>Q2FZ20:PNP_STAA8 Polyribonucleotide nucleotidyltransferase - Staphylococcus aureus|
           (strain NCTC 8325)
          Length = 698

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +3

Query: 342 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 518
           R+ + +   +  +G     TV+ ++ YGAF+ +  G + LLH+SQIS +R+  +  VL+ 
Sbjct: 613 REIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKI 672

Query: 519 GDTLKVMILSHDRERGRVSLSTKKLE 596
           GDT++V I   D++ GRV+ S + LE
Sbjct: 673 GDTIEVKITEIDKQ-GRVNASHRALE 697

---

>Q2FHG4:PNP_STAA3 Polyribonucleotide nucleotidyltransferase - Staphylococcus aureus|
           (strain USA300)
          Length = 698

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +3

Query: 342 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 518
           R+ + +   +  +G     TV+ ++ YGAF+ +  G + LLH+SQIS +R+  +  VL+ 
Sbjct: 613 REIIEEITREAEVGQTYQATVKRIEKYGAFVGLFPGKDALLHISQISKNRIEKVEDVLKI 672

Query: 519 GDTLKVMILSHDRERGRVSLSTKKLE 596
           GDT++V I   D++ GRV+ S + LE
Sbjct: 673 GDTIEVKITEIDKQ-GRVNASHRALE 697

---

>Q89AF8:PNP_BUCBP Polyribonucleotide nucleotidyltransferase - Buchnera aphidicola|
           subsp. Baizongia pistaciae
          Length = 693

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
 Frame = +3

Query: 255 TTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFI 434
           TT E  ++ +  +K   V +E+ +  +   K +    A++ +GSV  G V  +  +GAF+
Sbjct: 585 TTIE--IEDDGTVKISAVMQEKAKCAIQRIKEIT---AEVEVGSVYTGKVTRIVDFGAFV 639

Query: 435 DIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTK 587
            IG G  GL+H+SQI+H RV  +S  L+    + V +L  DR+ GR+ LS K
Sbjct: 640 SIGIGKEGLVHISQIAHKRVDKVSDHLRLHQEIFVKVLEVDRQ-GRLRLSIK 690

---

>Q4L5X7:PNP_STAHJ Polyribonucleotide nucleotidyltransferase - Staphylococcus|
           haemolyticus (strain JCSC1435)
          Length = 700

 Score = 55.8 bits (133), Expect = 3e-07
 Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
 Frame = +3

Query: 342 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 518
           R+ + D   +  +G V    V+ ++ YGAF+++  G + LLH+SQIS +R+  +  VL  
Sbjct: 613 REIIEDITREAEVGQVYNAKVKRIEKYGAFVELFAGKDALLHISQISKERINKVEDVLSI 672

Query: 519 GDTLKVMILSHDRERGRVSLSTKKLE 596
           GD++ V I   D++ GRV+ S K L+
Sbjct: 673 GDSIDVKITEIDKQ-GRVNASHKALD 697

---

>Q1RIG0:PNP_RICBR Polyribonucleotide nucleotidyltransferase - Rickettsia bellii|
           (strain RML369-C)
          Length = 744

 Score = 55.8 bits (133), Expect = 3e-07
 Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
 Frame = +3

Query: 309 DEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFID-IGGINGLLHVSQISHD 485
           D+++ ++ L   KA+A    +  IG V  GTV  +   GAF++ +G  +G +H+S+I+ +
Sbjct: 602 DKDKLKVALDKVKAIA---IEPEIGEVFNGTVMKILDSGAFVNYLGNKDGFVHISEIAEE 658

Query: 486 RVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPK 629
           R+  + +VL+ GD +KV ++  D  +G+  L+ K  E         PK
Sbjct: 659 RIESVGSVLKQGDIVKVKLIGFD-NKGKAKLTIKNAEKDKSSANPKPK 705

---

>Q49X62:PNP_STAS1 Polyribonucleotide nucleotidyltransferase - Staphylococcus|
           saprophyticus subsp. saprophyticus (strain ATCC 15305 /
           DSM 20229)
          Length = 697

 Score = 55.5 bits (132), Expect = 4e-07
 Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
 Frame = +3

Query: 342 RKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADISTVLQP 518
           R  + D   +  +G V  G V+ ++ YGAF+++  G + L+H+SQI+++R+  +  VL+ 
Sbjct: 613 RSIIEDITREAEVGQVYEGKVKRIEKYGAFVELFPGKDALVHISQIANERIDKVEDVLKV 672

Query: 519 GDTLKVMILSHDRERGRVSLSTKKL 593
           GD  K+ +   D++ GRV+ S K L
Sbjct: 673 GDIFKIKVTEIDKQ-GRVNASHKAL 696

---

>Q8K9H5:PNP_BUCAP Polyribonucleotide nucleotidyltransferase - Buchnera aphidicola|
           subsp. Schizaphis graminum
          Length = 707

 Score = 55.5 bits (132), Expect = 4e-07
 Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = +3

Query: 366 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
           A++ +G +  G V  +  +GAFI IG G  GL+H+SQIS+ RV  +S  L     + V +
Sbjct: 617 AEIEVGRIYSGKVTRIVDFGAFISIGIGKEGLVHISQISNKRVEKVSDHLTVDQIISVKV 676

Query: 543 LSHDRERGRVSLSTKKLE 596
           L  DR+ GR+ LS K++E
Sbjct: 677 LEIDRQ-GRLRLSIKEVE 693

---

>Q92HV7:PNP_RICCN Polyribonucleotide nucleotidyltransferase - Rickettsia conorii|
          Length = 749

 Score = 54.3 bits (129), Expect = 8e-07
 Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
 Frame = +3

Query: 309 DEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFID-IGGINGLLHVSQISHD 485
           D ++ ++ L   KA+     +  IG +  GTV  +   GAFI+ +G  +G +H+S++S +
Sbjct: 602 DRDKLKVALDKIKAIV---VEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGE 658

Query: 486 RVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPK 629
           R+  +S+VL+ GD +KV ++  D  +G+  L+ K  +         PK
Sbjct: 659 RIETVSSVLKQGDIVKVKLIGFD-NKGKAKLTIKNADKDKSSNNTKPK 705

---

>P57454:PNP_BUCAI Polyribonucleotide nucleotidyltransferase - Buchnera aphidicola|
           subsp. Acyrthosiphon pisum (Acyrthosiphon pisum
           symbiotic bacterium)
          Length = 707

 Score = 53.9 bits (128), Expect = 1e-06
 Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = +3

Query: 366 AQLGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
           A++ +G +  G V  +  +GAF+ IG G  GL+H+SQIS  RV  +S  L+    + V +
Sbjct: 617 AEIEVGRIYSGKVTRIVDFGAFVSIGLGKEGLVHISQISDKRVDKVSNHLKIDQIISVKV 676

Query: 543 LSHDRERGRVSLSTKKLE 596
           L  DR+ GR+ LS K+++
Sbjct: 677 LEIDRQ-GRLRLSIKEID 693

---

>Q57581:IF2A_METJA Translation initiation factor 2 alpha subunit - Methanococcus|
           jannaschii
          Length = 266

 Score = 53.9 bits (128), Expect = 1e-06
 Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDI---GGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSH 551
           G +V+GTV+ +KPYGAF+++    G  G++H+S+++   V +I   ++ G  +   +L  
Sbjct: 12  GDIVIGTVKDVKPYGAFVELLEYPGKEGMIHISEVTSGWVKNIRDHVKVGQRVVAKVLRV 71

Query: 552 DRERGRVSLSTKKL 593
           D  +G + LS K++
Sbjct: 72  DERKGHIDLSLKRV 85

---

>Q05022:RRP5_YEAST rRNA biogenesis protein RRP5 - Saccharomyces cerevisiae (Baker's|
            yeast)
          Length = 1729

 Score = 52.0 bits (123), Expect = 4e-06
 Identities = 35/138 (25%), Positives = 74/138 (53%), Gaps = 14/138 (10%)
 Frame = +3

Query: 216  LKAFVPFSQVSSKTTAEELLDKELPLKFV----EVDEEQGRLVLSNRKA-------MADS 362
            ++AFVP S++S  +  +E      P+++V       +E  R+ L+ R++       +  +
Sbjct: 1200 VEAFVPVSKLSD-SYLKEWKKFYKPMQYVLGKVVTCDEDSRISLTLRESEINGDLKVLKT 1258

Query: 363  QAQLGIGSVVLGTVESLKPYGAFIDIGG---INGLLHVSQISHDRVADISTVLQPGDTLK 533
             + +  G V  GT++S+  +G F+ +     + GL H+++I+  +  D+S +   GD +K
Sbjct: 1259 YSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVK 1318

Query: 534  VMILSHDRERGRVSLSTK 587
             ++L  + E+ ++SLS K
Sbjct: 1319 AIVLKTNPEKKQISLSLK 1336

---

>O34275:PNP_YEREN Polyribonucleotide nucleotidyltransferase - Yersinia enterocolitica|
          Length = 706

 Score = 51.6 bits (122), Expect = 5e-06
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
 Frame = +3

Query: 366 AQLGIGSVVLGTVESLKPYGAFIDIGG-INGLLHVSQISHDRVADISTVLQPGDTLKVMI 542
           A++ +  +  G V  +  +GAF+ IGG   GL+H+SQI+  RV  ++  LQ G  + V +
Sbjct: 617 AEIEVNRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVDKVTDYLQMGQEVPVKV 676

Query: 543 LSHDRERGRVSLSTKK 590
           +  DR+ GR+ LS K+
Sbjct: 677 IEVDRQ-GRIRLSMKE 691

---

>Q9YF02:IF2A_AERPE Translation initiation factor 2 alpha subunit - Aeropyrum pernix|
          Length = 277

 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
 Frame = +3

Query: 330 VLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFI---DIGGINGLLHVSQISHDRVADI 500
           +L  RK + D      +G +V+GTV+ +  YGA++   + GG+   L  S+I+   V +I
Sbjct: 11  LLKPRKPLPD------VGEIVVGTVQEVHDYGAYLILDEYGGVRAFLPWSEIASRAVRNI 64

Query: 501 STVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRI 680
             VL+P   + V ++   ++RG+V +S K++     D  +  K++F K    A    + I
Sbjct: 65  HAVLKPRQKVVVKVIRVYKKRGQVDVSLKRVM----DSEKKRKMMFYKRYLKAATLVELI 120

Query: 681 AQ 686
           A+
Sbjct: 121 AE 122

---

>P71353:Y568_HAEIN Uncharacterized protein HI0568 - Haemophilus influenzae|
          Length = 762

 Score = 49.3 bits (116), Expect = 3e-05
 Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDR 557
           G ++ GTV ++  +GAF+DIG   +GL+H+S +S   V D   V++ G+ +KV +L  D 
Sbjct: 651 GMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDV 710

Query: 558 ERGRVSLSTK 587
            R R++L+ +
Sbjct: 711 PRKRIALTMR 720

---

>Q5X9W0:PNP_STRP6 Polyribonucleotide nucleotidyltransferase - Streptococcus pyogenes|
           serotype M6
          Length = 710

 Score = 49.3 bits (116), Expect = 3e-05
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
 Frame = +3

Query: 300 VEVDEEQGRLVLSNRKAMADSQAQL--------GIGSVVLGTVESLKPYGAFIDI-GGIN 452
           +++D+E    + S+ +A  +   ++         +G V    V  ++ +GAF+++    +
Sbjct: 590 IDIDDEGNVSIYSSDQAAINRTKEIIAGLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTD 649

Query: 453 GLLHVSQISHDRVADISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 605
            L+H+S+I+  R  ++S VL+ G+ + V ++  D E+GRV  S K L P P
Sbjct: 650 ALVHISEIAWTRTTNVSDVLEVGEDVDVKVIKID-EKGRVDASMKALIPRP 699

---

>Q5JE49:IF2A_PYRKO Translation initiation factor 2 alpha subunit - Pyrococcus|
           kodakaraensis (Thermococcus kodakaraensis)
          Length = 275

 Score = 48.9 bits (115), Expect = 3e-05
 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIG---GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSH 551
           G  V+ TV+++ PYGAF+ +    G  G +H+S+++   V +I   L+ G  +   ++  
Sbjct: 12  GEFVVATVKNIHPYGAFLTLDEYPGKEGFMHISEVAPTWVKNIRDYLKEGQKIVAKVIRV 71

Query: 552 DRERGRVSLSTKKL 593
           D E+G + LS K++
Sbjct: 72  DPEKGHIDLSLKRV 85

---

>Q45388:TEX_BORPE Protein tex - Bordetella pertussis|
          Length = 791

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDR 557
           G V+ G V ++  +GAF+DIG   +GL+H+S ++   V D   V++ G T+ V +L  D 
Sbjct: 670 GMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDV 729

Query: 558 ERGRVSLSTK 587
            R RV+L+ +
Sbjct: 730 ARKRVALTMR 739

---

>Q8U1R5:IF2A_PYRFU Translation initiation factor 2 alpha subunit - Pyrococcus furiosus|
          Length = 275

 Score = 45.1 bits (105), Expect = 5e-04
 Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIG---GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSH 551
           G +V+ TV+ +  YGAF+D+    G  G +H+S+++   V +I   L+ G  +   ++  
Sbjct: 12  GELVVATVKRVHNYGAFLDLDEYPGKEGFMHISEVASTWVKNIRDYLREGQKVVAKVIRV 71

Query: 552 DRERGRVSLSTKKL 593
           D ++G + LS +++
Sbjct: 72  DPKKGHIDLSLRRV 85

---

>O29723:IF2A_ARCFU Translation initiation factor 2 alpha subunit - Archaeoglobus|
           fulgidus
          Length = 267

 Score = 44.7 bits (104), Expect = 6e-04
 Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIG---GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSH 551
           G +V+GTV+ +  +GAF+ +    G  G++H+S+++   + DI   ++ G  +   +L  
Sbjct: 17  GEIVIGTVKRVLDFGAFVSLDEYEGREGMVHISEVASGWIKDIREHVKKGQKVICKVLDV 76

Query: 552 DRERGRVSLSTK 587
           + +RG + LS K
Sbjct: 77  NPKRGHIDLSIK 88

---

>P39466:RPOE_SULAC DNA-directed RNA polymerase subunit E - Sulfolobus acidocaldarius|
          Length = 183

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
 Frame = +3

Query: 378 IGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADIST-----------VLQPGD 524
           I  V+ G V  +  YG ++++G ++GL+H+SQI+ D +   S             +Q GD
Sbjct: 81  IHEVIEGEVSQVDNYGVYVNMGPVDGLVHISQITDDNLKFDSNRGILIGEKSKKSIQKGD 140

Query: 525 TLKVMILSHDRERGRV 572
            ++ MI+S     GR+
Sbjct: 141 RVRAMIISASMSSGRL 156

---

>Q8TY86:IF2A_METKA Translation initiation factor 2 alpha subunit - Methanopyrus|
           kandleri
          Length = 267

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 26/105 (24%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIG---GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSH 551
           G +V+ TVE ++ +GAF+ +    G++G +H+S+++   V +I   ++ G  +   ++  
Sbjct: 12  GEIVMATVERVEDHGAFVTLDEYPGVDGYIHISEVASGWVKNIRDYVKEGQKVVAKVIRV 71

Query: 552 DRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQ 686
           + +R   +LS +K+     D  R  KL   K ++ A+   +  A+
Sbjct: 72  NPKRKYANLSLRKVT----DHQRKEKLKEWKREQRAEKLLEMAAE 112

---

>Q497V5:SRBD1_MOUSE S1 RNA-binding domain-containing protein 1 - Mus musculus (Mouse)|
          Length = 1015

 Score = 42.0 bits (97), Expect = 0.004
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
 Frame = +3

Query: 372  LGIGSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADI----STVLQPGDTLKV 536
            L +G+V+ G VE+   +G F+DIG G  GL+ +  I+  +++      S  L PG+ ++V
Sbjct: 936  LQVGTVLTGKVENATLFGVFVDIGVGKAGLIPIRFITEAKLSKTKRRRSLGLGPGEKVEV 995

Query: 537  MILSHDRERGRVSL 578
             +L+ D  R R+SL
Sbjct: 996  KVLNVDIPRSRISL 1009

---

>Q9ESX4:NO40_MOUSE Nucleolar protein of 40 kDa - Mus musculus (Mouse)|
          Length = 241

 Score = 40.8 bits (94), Expect = 0.009
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
 Frame = +3

Query: 384 SVVLGTVESLKPYGAFIDIGGI--NGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD- 554
           ++  G V  +  YGAFI I G    GL+H + +S  RV   S ++  GD + V ++  + 
Sbjct: 17  TIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREM 76

Query: 555 -RERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQ 686
             +R +VSLS K +    G  +    +V E+ +   + F+    Q
Sbjct: 77  KNDRIKVSLSMKVVNQGTGKDLDPNNVVIEQEERRRRSFQDYTGQ 121

---

>Q9NP64:NO40_HUMAN Nucleolar protein of 40 kDa - Homo sapiens (Human)|
          Length = 241

 Score = 40.4 bits (93), Expect = 0.012
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
 Frame = +3

Query: 384 SVVLGTVESLKPYGAFIDIGGI--NGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD- 554
           ++  G V  +  YGAFI I G    GL+H + +S  RV   S ++  GD + V ++  + 
Sbjct: 17  TIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREM 76

Query: 555 -RERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQ 686
             +R +VSLS K +    G  +    ++ E+ +   + F+    Q
Sbjct: 77  KNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTGQ 121

---

>O27363:IF2A_METTH Translation initiation factor 2 alpha subunit - Methanobacterium|
           thermoautotrophicum
          Length = 262

 Score = 39.3 bits (90), Expect = 0.027
 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFI---DIGGINGLLHVSQISHDRVADISTVLQPGDTLKVMILSH 551
           G +V+GTV  +  YGAF    +  G    +H+S++S   V +I   ++    +   +L  
Sbjct: 15  GELVVGTVHKVLNYGAFATLEEYPGKEAFIHISEVSSGWVKNIRDFVRENQKIVARVLRV 74

Query: 552 DRERGRVSLSTKKLEPTPGDMIRNPKLVFEKADEMAQIFRQRIAQ 686
           +  +G V +S K++        R  K+   K ++ A+ F +  A+
Sbjct: 75  NPRKGHVDVSMKRIREDQ----RTKKIQAWKIEQKAEKFLELAAR 115

---

>Q57840:RPOE1_METJA DNA-directed RNA polymerase subunit E' - Methanococcus jannaschii|
          Length = 187

 Score = 37.0 bits (84), Expect = 0.13
 Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 16/84 (19%)
 Frame = +3

Query: 387 VVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVA-----------DISTVLQPGDTLK 533
           ++ G V  +  +G+F+ +G ++GL+HVSQI  D V+           +   VL+ GD ++
Sbjct: 84  LIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVR 143

Query: 534 VMI----LSHDRERG-RVSLSTKK 590
             I    L  +R+RG +++L+ ++
Sbjct: 144 ARIVAISLKAERKRGSKIALTMRQ 167

---

>Q14690:RRP5_HUMAN RRP5 protein homolog - Homo sapiens (Human)|
          Length = 1871

 Score = 33.1 bits (74), Expect = 1.9
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 372  LGIGSVVLGTVESLKPYGAFIDI-GGINGLLHVSQISHDRVADIS--TVLQPGDTLKVMI 542
            L IG +V GTV+S+KP    + +  GI G +H S I  D     S  T L+ G T+   +
Sbjct: 1033 LSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPTTKLKVGKTVTARV 1092

Query: 543  L 545
            +
Sbjct: 1093 I 1093



 Score = 32.7 bits (73), Expect = 2.5
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 381 GSVVLGTVESLKPYGAFIDIG-GINGLLHVSQISHDRVADISTVLQPGDTLKVMILSHDR 557
           G+VV GTV ++K YG  + +G  + GL+    ++   + +       GD +K  +L  D 
Sbjct: 453 GAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDP 512

Query: 558 ERGRVSLSTKK 590
           E  ++ ++ KK
Sbjct: 513 EAKKLMMTLKK 523

---

>Q9Y2L1:RRP44_HUMAN Exosome complex exonuclease RRP44 - Homo sapiens (Human)|
          Length = 958

 Score = 33.1 bits (74), Expect = 1.9
 Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 25/159 (15%)
 Frame = +3

Query: 201 ALVEGLKAFVPFSQVSSKTTAEELLDKELPLKFVEVDEEQGRLVLSNRKAMADSQAQLGI 380
           A+ EG+ AF     V S T   EL+D+   L     + E G+++ S    ++  Q  +  
Sbjct: 184 AIEEGIPAFTCEEYVKSLTANPELIDRLACLSEEGNEIESGKIIFSEHLPLSKLQQGIKS 243

Query: 381 GSVVLGTVESLKP--YGAFIDIGGIN---------GLLHVSQISHDRVADISTVLQPGDT 527
           G+ + GT  + +     A + I G N         GL H+++  H+ +  +  + +    
Sbjct: 244 GTYLQGTFRASRENYLEATVWIHGDNEENKEIILQGLKHLNRAVHEDIVAVELLPKSQWV 303

Query: 528 LKVMILSHDRERG--------------RVSLSTKKLEPT 602
               ++ HD  +               + ++S K L+PT
Sbjct: 304 APSSVVLHDEGQNEEDVEKEEETERMLKTAVSEKMLKPT 342

---

>Q8K917:RNR_BUCAP Ribonuclease R - Buchnera aphidicola subsp. Schizaphis graminum|
          Length = 726

 Score = 32.0 bits (71), Expect = 4.2
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
 Frame = +3

Query: 369 QLGIGSVVLGTVESLKPYGAFIDIGG--INGLLHVSQISHDRVADISTVLQP-------- 518
           Q  IG V+ G + ++  +G F+ +    I+GL+H++ +  D     S  L+         
Sbjct: 638 QKKIGDVLTGVISNVTSFGFFVRLNQFFIDGLVHIATLIDDYYYFDSIGLKLIGKSSKNT 697

Query: 519 ---GDTLKVMILSHDRERGRVSLS 581
              GDTLKV ++S +    ++ LS
Sbjct: 698 YCLGDTLKVKVISVNLNERKIELS 721

---

>Q612F5:PCCA_CAEBR Propionyl-CoA carboxylase alpha chain, mitochondrial precursor -|
           Caenorhabditis briggsae
          Length = 738

 Score = 31.2 bits (69), Expect = 7.2
 Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 20/82 (24%)
 Frame = +3

Query: 423 GAFIDIGG------------INGLLHVSQISHDRVADISTVLQPGDTLKVMILSHD---- 554
           G  IDI G            +NG    +QI   R  +I TVL  G   KV +L       
Sbjct: 598 GKVIDISGNLSLSLPVNSIEVNGEHITTQIVGKRAGEI-TVLYKGTPFKVQVLPEQAVKY 656

Query: 555 ----RERGRVSLSTKKLEPTPG 608
               +E+ +V LST  L P PG
Sbjct: 657 LQYMKEKAKVDLSTVVLSPMPG 678

---

>Q97Z79:IF2A_SULSO Translation initiation factor 2 alpha subunit - Sulfolobus|
           solfataricus
          Length = 266

 Score = 31.2 bits (69), Expect = 7.2
 Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
 Frame = +3

Query: 213 GLKAFVPFSQVSSK--TTAEELL--DKELPLKFVEVDEEQGRLVLSNRKAMADSQ 365
           GL+AF+P+S+VSSK      ++L  ++++ +K + VD  +G + +S +K   D +
Sbjct: 36  GLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVTDDER 90


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 181,330,048
Number of extensions: 3982509
Number of successful extensions: 10219
Number of sequences better than 10.0: 96
Number of HSP's gapped: 10152
Number of HSP's successfully gapped: 183
Length of query: 343
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 229
Effective length of database: 69,416,809
Effective search space: 15896449261
Effective search space used: 15896449261
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

---