ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf31h08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001061800.1| Oryza sativa (japonica cultivar-group) Os05g0347000 (Os05g0347000) mRNA, complete cds Length = 910 Score = 492 bits (248), Expect = e-135 Identities = 409/462 (88%), Gaps = 3/462 (0%) Strand = Plus / Plus Query: 5 atggacgagcagttcatcctccgcgtgcccccatccgtggcggagcggatcgagcgtctt 64 ||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| || Sbjct: 155 atggaggagcagttcatcctccgggttcccccctccgtcgcggagcggatcgagcgcctc 214 Query: 65 atgagcgaatctgccgccggctcgtcctc---caaccccgacgacgcctccctcgacctc 121 |||| |||||| ||||||| ||| ||||| ||||||||| ||||| |||||||||||| Sbjct: 215 atgaacgaatccgccgccgcctcctcctcttccaaccccgaagacgcgtccctcgacctc 274 Query: 122 tccttctcagaggatggaaggagtggcacatttatgattggtaaccagaggtttcctgca 181 |||||||||||||||||||| | |||||||||||||||||| || | || ||||||||| Sbjct: 275 tccttctcagaggatggaagaaatggcacatttatgattgggaatgaaagctttcctgca 334 Query: 182 tctctcttggatctcccaaccgttgtggagtcatataagacatatgatgattccttttta 241 || ||||||||||||||||| |||||||||||||| ||||||||||||||||| | || Sbjct: 335 tcactcttggatctcccaactgttgtggagtcatacaagacatatgatgattcagtgcta 394 Query: 242 gttaaaactgctgatgttggtcagatggtaatggtaagagaagaagatgatcctgctcca 301 ||||||| |||||| ||||||||||| | ||||||||||||||||| |||||||||||| Sbjct: 395 attaaaacagctgatattggtcagatgattatggtaagagaagaagaagatcctgctcca 454 Query: 302 gaaggagttgaatacaagcatggacttactcctccaatgagggatgcacgcaggcgacgt 361 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 455 gaaggagttgaatacaagcatggtcttactcctccaatgagggacgcacgcaggcggcgt 514 Query: 362 tttcgcagagagcctgacttgagtgcagagcttgttcaccgagttgagaaggatcttatg 421 || ||||| |||||||| |||| ||| || |||||||||||||||||||||||||| || Sbjct: 515 ttccgcagggagcctgatttgaatgccgaacttgttcaccgagttgagaaggatctcatt 574 Query: 422 agtattatgcaaggagtgcctgtcaaccagaatgctagtgca 463 ||||||||||| || || || ||||||||||||| |||||| Sbjct: 575 agtattatgcatggggtatctatcaaccagaatgccagtgca 616 Score = 73.8 bits (37), Expect = 8e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 536 cctgctgcaaatggcgaagaagctgacgctgataggagcgactctgatgagtc 588 |||||||||||||||||||||||||| || || ||||| |||||||||||||| Sbjct: 692 cctgctgcaaatggcgaagaagctgaggcagagaggagtgactctgatgagtc 744
>dbj|AK109444.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-F01, full insert sequence Length = 910 Score = 492 bits (248), Expect = e-135 Identities = 409/462 (88%), Gaps = 3/462 (0%) Strand = Plus / Plus Query: 5 atggacgagcagttcatcctccgcgtgcccccatccgtggcggagcggatcgagcgtctt 64 ||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| || Sbjct: 155 atggaggagcagttcatcctccgggttcccccctccgtcgcggagcggatcgagcgcctc 214 Query: 65 atgagcgaatctgccgccggctcgtcctc---caaccccgacgacgcctccctcgacctc 121 |||| |||||| ||||||| ||| ||||| ||||||||| ||||| |||||||||||| Sbjct: 215 atgaacgaatccgccgccgcctcctcctcttccaaccccgaagacgcgtccctcgacctc 274 Query: 122 tccttctcagaggatggaaggagtggcacatttatgattggtaaccagaggtttcctgca 181 |||||||||||||||||||| | |||||||||||||||||| || | || ||||||||| Sbjct: 275 tccttctcagaggatggaagaaatggcacatttatgattgggaatgaaagctttcctgca 334 Query: 182 tctctcttggatctcccaaccgttgtggagtcatataagacatatgatgattccttttta 241 || ||||||||||||||||| |||||||||||||| ||||||||||||||||| | || Sbjct: 335 tcactcttggatctcccaactgttgtggagtcatacaagacatatgatgattcagtgcta 394 Query: 242 gttaaaactgctgatgttggtcagatggtaatggtaagagaagaagatgatcctgctcca 301 ||||||| |||||| ||||||||||| | ||||||||||||||||| |||||||||||| Sbjct: 395 attaaaacagctgatattggtcagatgattatggtaagagaagaagaagatcctgctcca 454 Query: 302 gaaggagttgaatacaagcatggacttactcctccaatgagggatgcacgcaggcgacgt 361 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 455 gaaggagttgaatacaagcatggtcttactcctccaatgagggacgcacgcaggcggcgt 514 Query: 362 tttcgcagagagcctgacttgagtgcagagcttgttcaccgagttgagaaggatcttatg 421 || ||||| |||||||| |||| ||| || |||||||||||||||||||||||||| || Sbjct: 515 ttccgcagggagcctgatttgaatgccgaacttgttcaccgagttgagaaggatctcatt 574 Query: 422 agtattatgcaaggagtgcctgtcaaccagaatgctagtgca 463 ||||||||||| || || || ||||||||||||| |||||| Sbjct: 575 agtattatgcatggggtatctatcaaccagaatgccagtgca 616 Score = 73.8 bits (37), Expect = 8e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 536 cctgctgcaaatggcgaagaagctgacgctgataggagcgactctgatgagtc 588 |||||||||||||||||||||||||| || || ||||| |||||||||||||| Sbjct: 692 cctgctgcaaatggcgaagaagctgaggcagagaggagtgactctgatgagtc 744
>gb|AY109074.1| Zea mays PCO149311 mRNA sequence Length = 898 Score = 452 bits (228), Expect = e-124 Identities = 396/450 (88%), Gaps = 4/450 (0%) Strand = Plus / Plus Query: 5 atggacgagcagttcatcctccgcgtgcccccatccgtggcggagcggatcgagcgtctt 64 ||||| ||||||||||||||||||||||| |||||||| || |||||||||||||| || Sbjct: 204 atggaggagcagttcatcctccgcgtgccgccatccgtcgcagagcggatcgagcgcctc 263 Query: 65 atgagcgaatctgccgccggctcgtcctccaaccccgacgacgcctccctcgacctctcc 124 |||| ||||| |||||| || ||||||||||||||||| |||||||| ||||||||| Sbjct: 264 atgaatgaatccgccgcc---tcctcctccaaccccgacgaggcctccctggacctctcc 320 Query: 125 ttctcagaggatggaaggagtggcacatttatgattggtaaccagaggtttcctgcatct 184 ||||||||||||||||| | ||||||||||||||| ||||| |||| |||||||||||| Sbjct: 321 ttctcagaggatggaagaaatggcacatttatgatcggtaatgagagctttcctgcatct 380 Query: 185 ctcttggatctcccaaccgttgtggagtcatataagacatatgatgattcctttttagtt 244 ||||||||||| || | || ||||||||||| || |||||||||||||| | || || Sbjct: 381 ctcttggatctacctgctgtggtggagtcatacaaaacatatgatgattctgtactaatt 440 Query: 245 aaaactgctgatgttggtcagatggtaatggtaagagaagaagatgatcctgctccagaa 304 |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| Sbjct: 441 aaaactgctgatgttggtcagatgattatggtaagagaagaaaatgatcctgctccagaa 500 Query: 305 ggagttgaatacaagcat-ggacttactcctccaatgagggatgcacgcaggcgacgttt 363 ||||| || ||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 501 ggagtcgagtacaagcatggggcttactcctccaatgagggatgcacgcaggcgacgttt 560 Query: 364 tcgcagagagcctgacttgagtgcagagcttgttcaccgagttgagaaggatcttatgag 423 |||||||| || ||||||| |||||||| ||| ||| |||||||||| ||||||| || Sbjct: 561 ccgcagagaaccagacttgaacgcagagctggttaaccaagttgagaagcatcttatcag 620 Query: 424 tattatgcaaggagtgcctgtcaaccagaa 453 ||| ||||| ||||| ||||||||||||| Sbjct: 621 tatcatgcatggagtatctgtcaaccagaa 650
>dbj|AK241160.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065115F03, full insert sequence Length = 1055 Score = 444 bits (224), Expect = e-121 Identities = 393/448 (87%), Gaps = 1/448 (0%) Strand = Plus / Plus Query: 12 agcagttcatcctccgcgtgcccccatccgtggcggagcggatcgagcgtcttatgagcg 71 |||||||||||||||| |||||||| |||||||||||||||||||| || || |||| | Sbjct: 113 agcagttcatcctccgtgtgccccc-tccgtggcggagcggatcgaacgcctcatgaacc 171 Query: 72 aatctgccgccggctcgtcctccaaccccgacgacgcctccctcgacctctccttctcag 131 || | |||| || || ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 172 aagccgccggcgcgtcatcctccaaccccgacgacgcctccctcgatctctccttctcag 231 Query: 132 aggatggaaggagtggcacatttatgattggtaaccagaggtttcctgcatctctcttgg 191 |||||||||| |||||||||||||||||||| || | || ||||| ||||||||||| | Sbjct: 232 aggatggaagaagtggcacatttatgattggaaatgaaagctttccagcatctctcttag 291 Query: 192 atctcccaaccgttgtggagtcatataagacatatgatgattcctttttagttaaaactg 251 |||||||||| ||| |||||||||| |||||||| ||||||| | || ||||||| | Sbjct: 292 atctcccaactgttatggagtcatacaagacatacaatgattcagtgctaattaaaacag 351 Query: 252 ctgatgttggtcagatggtaatggtaagagaagaagatgatcctgctccagaaggagttg 311 ||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| ||| Sbjct: 352 ctgatattggtcagatgattatggtaagagaagaagatgatcctgctccagaaggaattg 411 Query: 312 aatacaagcatggacttactcctccaatgagggatgcacgcaggcgacgttttcgcagag 371 |||||| ||||| |||||||||||||||||||||||||| ||||| ||||| || |||| Sbjct: 412 aatacacacatggtcttactcctccaatgagggatgcacgaaggcggcgtttccggagag 471 Query: 372 agcctgacttgagtgcagagcttgttcaccgagttgagaaggatcttatgagtattatgc 431 |||||||||| | |||||| || |||||||||||||| ||| |||| |||| |||||||| Sbjct: 472 agcctgacttaaatgcagaactggttcaccgagttgaaaagcatctcatgaatattatgc 531 Query: 432 aaggagtgcctgtcaaccagaatgctag 459 | ||||| ||||||||||||||||||| Sbjct: 532 atggagtatctgtcaaccagaatgctag 559 Score = 63.9 bits (32), Expect = 8e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 489 gcaagaaagctgcaccagctcctgtacccaagcctgacgttcaagagcctgctgcaaatg 548 |||||||||||||||| ||||| | | |||||| | | |||||| || |||||||| | Sbjct: 583 gcaagaaagctgcacctgctccagcaaccaagcgtaatgttcaacgacccgctgcaaacg 642 Query: 549 gcgaagaagctgacgctgataggagcgactctgatgagtc 588 | ||||||||||| || || ||||| |||||||||||||| Sbjct: 643 gtgaagaagctgaggcagagaggagtgactctgatgagtc 682
>emb|CT837701.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110I06, full insert sequence Length = 1492 Score = 377 bits (190), Expect = e-101 Identities = 326/370 (88%), Gaps = 1/370 (0%) Strand = Plus / Plus Query: 12 agcagttcatcctccgcgtgcccccatccgtggcggagcggatcgagcgtcttatgagcg 71 |||||||||||||||| |||||||| |||||||||||||||||||| || || |||| | Sbjct: 111 agcagttcatcctccgtgtgccccc-tccgtggcggagcggatcgaacgcctcatgaacc 169 Query: 72 aatctgccgccggctcgtcctccaaccccgacgacgcctccctcgacctctccttctcag 131 || | |||| || || ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 170 aagccgccggcgcgtcatcctccaaccccgacgacgcctccctcgatctctccttctcag 229 Query: 132 aggatggaaggagtggcacatttatgattggtaaccagaggtttcctgcatctctcttgg 191 |||||||||| |||||||||||||||||||| || | || ||||| ||||||||||| | Sbjct: 230 aggatggaagaagtggcacatttatgattggaaatgaaagctttccagcatctctcttag 289 Query: 192 atctcccaaccgttgtggagtcatataagacatatgatgattcctttttagttaaaactg 251 |||||||||| ||| |||||||||| |||||||| ||||||| | || ||||||| | Sbjct: 290 atctcccaactgttatggagtcatacaagacatacaatgattcagtgctaattaaaacag 349 Query: 252 ctgatgttggtcagatggtaatggtaagagaagaagatgatcctgctccagaaggagttg 311 ||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| ||| Sbjct: 350 ctgatattggtcagatgattatggtaagagaagaagatgatcctgctccagaaggaattg 409 Query: 312 aatacaagcatggacttactcctccaatgagggatgcacgcaggcgacgttttcgcagag 371 |||||| ||||| |||||||||||||||||||||||||| ||||| ||||| || |||| Sbjct: 410 aatacacacatggtcttactcctccaatgagggatgcacgaaggcggcgtttccggagag 469 Query: 372 agcctgactt 381 |||||||||| Sbjct: 470 agcctgactt 479 Score = 63.9 bits (32), Expect = 8e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 489 gcaagaaagctgcaccagctcctgtacccaagcctgacgttcaagagcctgctgcaaatg 548 |||||||||||||||| ||||| | | |||||| | | |||||| || |||||||| | Sbjct: 1151 gcaagaaagctgcacctgctccagcaaccaagcgtaatgttcaacgacccgctgcaaacg 1210 Query: 549 gcgaagaagctgacgctgataggagcgactctgatgagtc 588 | ||||||||||| || || ||||| |||||||||||||| Sbjct: 1211 gtgaagaagctgaggcagagaggagtgactctgatgagtc 1250 Score = 50.1 bits (25), Expect = 0.012 Identities = 46/53 (86%) Strand = Plus / Plus Query: 386 gcagagcttgttcaccgagttgagaaggatcttatgagtattatgcaaggagt 438 ||||| || |||||||||||||| ||| |||| |||| ||||||||| ||||| Sbjct: 567 gcagaactggttcaccgagttgaaaagcatctcatgaatattatgcatggagt 619
>ref|NM_001050249.1| Oryza sativa (japonica cultivar-group) Os01g0648500 (Os01g0648500) mRNA, complete cds Length = 582 Score = 260 bits (131), Expect = 7e-66 Identities = 221/251 (88%) Strand = Plus / Plus Query: 131 gaggatggaaggagtggcacatttatgattggtaaccagaggtttcctgcatctctcttg 190 ||||||||||| |||||||||||||||||||| || | || ||||| ||||||||||| Sbjct: 208 gaggatggaagaagtggcacatttatgattggaaatgaaagctttccagcatctctctta 267 Query: 191 gatctcccaaccgttgtggagtcatataagacatatgatgattcctttttagttaaaact 250 ||||||||||| ||| |||||||||| |||||||| ||||||| | || ||||||| Sbjct: 268 gatctcccaactgttatggagtcatacaagacatacaatgattcagtgctaattaaaaca 327 Query: 251 gctgatgttggtcagatggtaatggtaagagaagaagatgatcctgctccagaaggagtt 310 |||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| || Sbjct: 328 gctgatattggtcagatgattatggtaagagaagaagatgatcctgctccagaaggaatt 387 Query: 311 gaatacaagcatggacttactcctccaatgagggatgcacgcaggcgacgttttcgcaga 370 ||||||| ||||| |||||||||||||||||||||||||| ||||| ||||| || ||| Sbjct: 388 gaatacacacatggtcttactcctccaatgagggatgcacgaaggcggcgtttccggaga 447 Query: 371 gagcctgactt 381 ||||||||||| Sbjct: 448 gagcctgactt 458
>emb|CT831300.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI021G13, full insert sequence Length = 826 Score = 258 bits (130), Expect = 3e-65 Identities = 231/264 (87%), Gaps = 3/264 (1%) Strand = Plus / Plus Query: 5 atggacgagcagttcatcctccgcgtgcccccatccgtggcggagcggatcgagcgtctt 64 ||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| || Sbjct: 214 atggaggagcagttcatcctccgggttcccccctccgtcgcggagcggatcgagcgcctc 273 Query: 65 atgagcgaatctgccgccggctcgtcctc---caaccccgacgacgcctccctcgacctc 121 |||| |||||| ||||||| ||| ||||| ||||||||| ||||| |||||||||||| Sbjct: 274 atgaacgaatccgccgccgcctcctcctcttccaaccccgaagacgcgtccctcgacctc 333 Query: 122 tccttctcagaggatggaaggagtggcacatttatgattggtaaccagaggtttcctgca 181 |||||||||||||||||||| | |||||||||||||||||| || | || ||||||||| Sbjct: 334 tccttctcagaggatggaagaaatggcacatttatgattgggaatgaaagctttcctgca 393 Query: 182 tctctcttggatctcccaaccgttgtggagtcatataagacatatgatgattccttttta 241 || ||||||||||||||||| |||||||||||||| ||||||||||||||||| | || Sbjct: 394 tcactcttggatctcccaactgttgtggagtcatacaagacatatgatgattcagtgcta 453 Query: 242 gttaaaactgctgatgttggtcag 265 ||||||| |||||| |||||||| Sbjct: 454 attaaaacagctgatattggtcag 477 Score = 218 bits (110), Expect = 2e-53 Identities = 155/170 (91%) Strand = Plus / Plus Query: 263 cagatggtaatggtaagagaagaagatgatcctgctccagaaggagttgaatacaagcat 322 |||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct: 553 cagatgattatggtaagagaagaagaagatcctgctccaggaggagttgaatacaagcat 612 Query: 323 ggacttactcctccaatgagggatgcacgcaggcgacgttttcgcagagagcctgacttg 382 || |||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||| Sbjct: 613 ggtcttactcctccaatgagggacgcacgcaggcggcgtttccgcagggagcctgatttg 672 Query: 383 agtgcagagcttgttcaccgagttgagaaggatcttatgagtattatgca 432 | ||| || |||||||||||||||||||||||||| || ||||||||||| Sbjct: 673 aatgccgaacttgttcaccgagttgagaaggatctcattagtattatgca 722
>gb|AC144742.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0052F16, complete sequence Length = 162082 Score = 168 bits (85), Expect = 2e-38 Identities = 112/121 (92%) Strand = Plus / Minus Query: 263 cagatggtaatggtaagagaagaagatgatcctgctccagaaggagttgaatacaagcat 322 |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1023 cagatgattatggtaagagaagaagaagatcctgctccagaaggagttgaatacaagcat 964 Query: 323 ggacttactcctccaatgagggatgcacgcaggcgacgttttcgcagagagcctgacttg 382 || |||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||| Sbjct: 963 ggtcttactcctccaatgagggacgcacgcaggcggcgtttccgcagggagcctgatttg 904 Query: 383 a 383 | Sbjct: 903 a 903 Score = 135 bits (68), Expect = 3e-28 Identities = 119/136 (87%) Strand = Plus / Minus Query: 130 agaggatggaaggagtggcacatttatgattggtaaccagaggtttcctgcatctctctt 189 |||||||||||| | |||||||||||||||||| || | || ||||||||||| ||||| Sbjct: 1234 agaggatggaagaaatggcacatttatgattgggaatgaaagctttcctgcatcactctt 1175 Query: 190 ggatctcccaaccgttgtggagtcatataagacatatgatgattcctttttagttaaaac 249 |||||||||||| |||||||||||||| ||||||||||||||||| | || ||||||| Sbjct: 1174 ggatctcccaactgttgtggagtcatacaagacatatgatgattcagtgctaattaaaac 1115 Query: 250 tgctgatgttggtcag 265 |||||| |||||||| Sbjct: 1114 agctgatattggtcag 1099 Score = 127 bits (64), Expect = 6e-26 Identities = 114/130 (87%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 5 atggacgagcagttcatcctccgcgtgcccccatccgtggcggagcggatcgagcgtctt 64 ||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| || Sbjct: 2185 atggaggagcagttcatcctccgggttcccccctccgtcgcggagcggatcgagcgcctc 2126 Query: 65 atgagcgaatctgccgccggctcgtcc---tccaaccccgacgacgcctccctcgacctc 121 |||| |||||| ||||||| ||| ||| ||||||||||| ||||| |||||||||||| Sbjct: 2125 atgaacgaatccgccgccgcctcctcctcttccaaccccgaagacgcgtccctcgacctc 2066 Query: 122 tccttctcag 131 |||||||||| Sbjct: 2065 tccttctcag 2056 Score = 73.8 bits (37), Expect = 8e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 536 cctgctgcaaatggcgaagaagctgacgctgataggagcgactctgatgagtc 588 |||||||||||||||||||||||||| || || ||||| |||||||||||||| Sbjct: 71 cctgctgcaaatggcgaagaagctgaggcagagaggagtgactctgatgagtc 19 Score = 65.9 bits (33), Expect = 2e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 392 cttgttcaccgagttgagaaggatcttatgagtattatgca 432 |||||||||||||||||||||||||| || ||||||||||| Sbjct: 799 cttgttcaccgagttgagaaggatctcattagtattatgca 759
>gb|AC134928.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1164G01, complete sequence Length = 151938 Score = 168 bits (85), Expect = 2e-38 Identities = 112/121 (92%) Strand = Plus / Minus Query: 263 cagatggtaatggtaagagaagaagatgatcctgctccagaaggagttgaatacaagcat 322 |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 57027 cagatgattatggtaagagaagaagaagatcctgctccagaaggagttgaatacaagcat 56968 Query: 323 ggacttactcctccaatgagggatgcacgcaggcgacgttttcgcagagagcctgacttg 382 || |||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||| Sbjct: 56967 ggtcttactcctccaatgagggacgcacgcaggcggcgtttccgcagggagcctgatttg 56908 Query: 383 a 383 | Sbjct: 56907 a 56907 Score = 135 bits (68), Expect = 3e-28 Identities = 119/136 (87%) Strand = Plus / Minus Query: 130 agaggatggaaggagtggcacatttatgattggtaaccagaggtttcctgcatctctctt 189 |||||||||||| | |||||||||||||||||| || | || ||||||||||| ||||| Sbjct: 57238 agaggatggaagaaatggcacatttatgattgggaatgaaagctttcctgcatcactctt 57179 Query: 190 ggatctcccaaccgttgtggagtcatataagacatatgatgattcctttttagttaaaac 249 |||||||||||| |||||||||||||| ||||||||||||||||| | || ||||||| Sbjct: 57178 ggatctcccaactgttgtggagtcatacaagacatatgatgattcagtgctaattaaaac 57119 Query: 250 tgctgatgttggtcag 265 |||||| |||||||| Sbjct: 57118 agctgatattggtcag 57103 Score = 127 bits (64), Expect = 6e-26 Identities = 114/130 (87%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 5 atggacgagcagttcatcctccgcgtgcccccatccgtggcggagcggatcgagcgtctt 64 ||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| || Sbjct: 58189 atggaggagcagttcatcctccgggttcccccctccgtcgcggagcggatcgagcgcctc 58130 Query: 65 atgagcgaatctgccgccggctcgtcc---tccaaccccgacgacgcctccctcgacctc 121 |||| |||||| ||||||| ||| ||| ||||||||||| ||||| |||||||||||| Sbjct: 58129 atgaacgaatccgccgccgcctcctcctcttccaaccccgaagacgcgtccctcgacctc 58070 Query: 122 tccttctcag 131 |||||||||| Sbjct: 58069 tccttctcag 58060 Score = 73.8 bits (37), Expect = 8e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 536 cctgctgcaaatggcgaagaagctgacgctgataggagcgactctgatgagtc 588 |||||||||||||||||||||||||| || || ||||| |||||||||||||| Sbjct: 56075 cctgctgcaaatggcgaagaagctgaggcagagaggagtgactctgatgagtc 56023 Score = 65.9 bits (33), Expect = 2e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 392 cttgttcaccgagttgagaaggatcttatgagtattatgca 432 |||||||||||||||||||||||||| || ||||||||||| Sbjct: 56803 cttgttcaccgagttgagaaggatctcattagtattatgca 56763
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 168 bits (85), Expect = 2e-38 Identities = 112/121 (92%) Strand = Plus / Minus Query: 263 cagatggtaatggtaagagaagaagatgatcctgctccagaaggagttgaatacaagcat 322 |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 16209670 cagatgattatggtaagagaagaagaagatcctgctccagaaggagttgaatacaagcat 16209611 Query: 323 ggacttactcctccaatgagggatgcacgcaggcgacgttttcgcagagagcctgacttg 382 || |||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||| Sbjct: 16209610 ggtcttactcctccaatgagggacgcacgcaggcggcgtttccgcagggagcctgatttg 16209551 Query: 383 a 383 | Sbjct: 16209550 a 16209550 Score = 135 bits (68), Expect = 3e-28 Identities = 119/136 (87%) Strand = Plus / Minus Query: 130 agaggatggaaggagtggcacatttatgattggtaaccagaggtttcctgcatctctctt 189 |||||||||||| | |||||||||||||||||| || | || ||||||||||| ||||| Sbjct: 16209881 agaggatggaagaaatggcacatttatgattgggaatgaaagctttcctgcatcactctt 16209822 Query: 190 ggatctcccaaccgttgtggagtcatataagacatatgatgattcctttttagttaaaac 249 |||||||||||| |||||||||||||| ||||||||||||||||| | || ||||||| Sbjct: 16209821 ggatctcccaactgttgtggagtcatacaagacatatgatgattcagtgctaattaaaac 16209762 Query: 250 tgctgatgttggtcag 265 |||||| |||||||| Sbjct: 16209761 agctgatattggtcag 16209746 Score = 127 bits (64), Expect = 6e-26 Identities = 114/130 (87%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 5 atggacgagcagttcatcctccgcgtgcccccatccgtggcggagcggatcgagcgtctt 64 ||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| || Sbjct: 16210832 atggaggagcagttcatcctccgggttcccccctccgtcgcggagcggatcgagcgcctc 16210773 Query: 65 atgagcgaatctgccgccggctcgtcc---tccaaccccgacgacgcctccctcgacctc 121 |||| |||||| ||||||| ||| ||| ||||||||||| ||||| |||||||||||| Sbjct: 16210772 atgaacgaatccgccgccgcctcctcctcttccaaccccgaagacgcgtccctcgacctc 16210713 Query: 122 tccttctcag 131 |||||||||| Sbjct: 16210712 tccttctcag 16210703 Score = 73.8 bits (37), Expect = 8e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 536 cctgctgcaaatggcgaagaagctgacgctgataggagcgactctgatgagtc 588 |||||||||||||||||||||||||| || || ||||| |||||||||||||| Sbjct: 16208718 cctgctgcaaatggcgaagaagctgaggcagagaggagtgactctgatgagtc 16208666 Score = 65.9 bits (33), Expect = 2e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 392 cttgttcaccgagttgagaaggatcttatgagtattatgca 432 |||||||||||||||||||||||||| || ||||||||||| Sbjct: 16209446 cttgttcaccgagttgagaaggatctcattagtattatgca 16209406
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 157 bits (79), Expect = 7e-35 Identities = 109/119 (91%) Strand = Plus / Plus Query: 263 cagatggtaatggtaagagaagaagatgatcctgctccagaaggagttgaatacaagcat 322 |||||| | |||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 26158918 cagatgattatggtaagagaagaagatgatcctgctccagaaggaattgaatacacacat 26158977 Query: 323 ggacttactcctccaatgagggatgcacgcaggcgacgttttcgcagagagcctgactt 381 || |||||||||||||||||||||||||| ||||| ||||| || |||||||||||||| Sbjct: 26158978 ggtcttactcctccaatgagggatgcacgaaggcggcgtttccggagagagcctgactt 26159036 Score = 119 bits (60), Expect = 2e-23 Identities = 106/120 (88%), Gaps = 1/120 (0%) Strand = Plus / Plus Query: 12 agcagttcatcctccgcgtgcccccatccgtggcggagcggatcgagcgtcttatgagcg 71 |||||||||||||||| |||||||| |||||||||||||||||||| || || |||| | Sbjct: 26157605 agcagttcatcctccgtgtgccccc-tccgtggcggagcggatcgaacgcctcatgaacc 26157663 Query: 72 aatctgccgccggctcgtcctccaaccccgacgacgcctccctcgacctctccttctcag 131 || | |||| || || ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 26157664 aagccgccggcgcgtcatcctccaaccccgacgacgcctccctcgatctctccttctcag 26157723 Score = 113 bits (57), Expect = 9e-22 Identities = 117/137 (85%) Strand = Plus / Plus Query: 129 cagaggatggaaggagtggcacatttatgattggtaaccagaggtttcctgcatctctct 188 ||||||||||||| |||||||||||||||||||| || | || ||||| |||||||||| Sbjct: 26158707 cagaggatggaagaagtggcacatttatgattggaaatgaaagctttccagcatctctct 26158766 Query: 189 tggatctcccaaccgttgtggagtcatataagacatatgatgattcctttttagttaaaa 248 | ||||||||||| ||| |||||||||| |||||||| ||||||| | || |||||| Sbjct: 26158767 tagatctcccaactgttatggagtcatacaagacatacaatgattcagtgctaattaaaa 26158826 Query: 249 ctgctgatgttggtcag 265 | |||||| |||||||| Sbjct: 26158827 cagctgatattggtcag 26158843 Score = 63.9 bits (32), Expect = 8e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 489 gcaagaaagctgcaccagctcctgtacccaagcctgacgttcaagagcctgctgcaaatg 548 |||||||||||||||| ||||| | | |||||| | | |||||| || |||||||| | Sbjct: 26159708 gcaagaaagctgcacctgctccagcaaccaagcgtaatgttcaacgacccgctgcaaacg 26159767 Query: 549 gcgaagaagctgacgctgataggagcgactctgatgagtc 588 | ||||||||||| || || ||||| |||||||||||||| Sbjct: 26159768 gtgaagaagctgaggcagagaggagtgactctgatgagtc 26159807 Score = 50.1 bits (25), Expect = 0.012 Identities = 46/53 (86%) Strand = Plus / Plus Query: 386 gcagagcttgttcaccgagttgagaaggatcttatgagtattatgcaaggagt 438 ||||| || |||||||||||||| ||| |||| |||| ||||||||| ||||| Sbjct: 26159124 gcagaactggttcaccgagttgaaaagcatctcatgaatattatgcatggagt 26159176
>dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1316_H05 Length = 105346 Score = 157 bits (79), Expect = 7e-35 Identities = 109/119 (91%) Strand = Plus / Plus Query: 263 cagatggtaatggtaagagaagaagatgatcctgctccagaaggagttgaatacaagcat 322 |||||| | |||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 64335 cagatgattatggtaagagaagaagatgatcctgctccagaaggaattgaatacacacat 64394 Query: 323 ggacttactcctccaatgagggatgcacgcaggcgacgttttcgcagagagcctgactt 381 || |||||||||||||||||||||||||| ||||| ||||| || |||||||||||||| Sbjct: 64395 ggtcttactcctccaatgagggatgcacgaaggcggcgtttccggagagagcctgactt 64453 Score = 119 bits (60), Expect = 2e-23 Identities = 106/120 (88%), Gaps = 1/120 (0%) Strand = Plus / Plus Query: 12 agcagttcatcctccgcgtgcccccatccgtggcggagcggatcgagcgtcttatgagcg 71 |||||||||||||||| |||||||| |||||||||||||||||||| || || |||| | Sbjct: 63022 agcagttcatcctccgtgtgccccc-tccgtggcggagcggatcgaacgcctcatgaacc 63080 Query: 72 aatctgccgccggctcgtcctccaaccccgacgacgcctccctcgacctctccttctcag 131 || | |||| || || ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 63081 aagccgccggcgcgtcatcctccaaccccgacgacgcctccctcgatctctccttctcag 63140 Score = 113 bits (57), Expect = 9e-22 Identities = 117/137 (85%) Strand = Plus / Plus Query: 129 cagaggatggaaggagtggcacatttatgattggtaaccagaggtttcctgcatctctct 188 ||||||||||||| |||||||||||||||||||| || | || ||||| |||||||||| Sbjct: 64124 cagaggatggaagaagtggcacatttatgattggaaatgaaagctttccagcatctctct 64183 Query: 189 tggatctcccaaccgttgtggagtcatataagacatatgatgattcctttttagttaaaa 248 | ||||||||||| ||| |||||||||| |||||||| ||||||| | || |||||| Sbjct: 64184 tagatctcccaactgttatggagtcatacaagacatacaatgattcagtgctaattaaaa 64243 Query: 249 ctgctgatgttggtcag 265 | |||||| |||||||| Sbjct: 64244 cagctgatattggtcag 64260 Score = 63.9 bits (32), Expect = 8e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 489 gcaagaaagctgcaccagctcctgtacccaagcctgacgttcaagagcctgctgcaaatg 548 |||||||||||||||| ||||| | | |||||| | | |||||| || |||||||| | Sbjct: 65125 gcaagaaagctgcacctgctccagcaaccaagcgtaatgttcaacgacccgctgcaaacg 65184 Query: 549 gcgaagaagctgacgctgataggagcgactctgatgagtc 588 | ||||||||||| || || ||||| |||||||||||||| Sbjct: 65185 gtgaagaagctgaggcagagaggagtgactctgatgagtc 65224 Score = 50.1 bits (25), Expect = 0.012 Identities = 46/53 (86%) Strand = Plus / Plus Query: 386 gcagagcttgttcaccgagttgagaaggatcttatgagtattatgcaaggagt 438 ||||| || |||||||||||||| ||| |||| |||| ||||||||| ||||| Sbjct: 64541 gcagaactggttcaccgagttgaaaagcatctcatgaatattatgcatggagt 64593
>dbj|AP003053.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0047B08 Length = 57846 Score = 157 bits (79), Expect = 7e-35 Identities = 109/119 (91%) Strand = Plus / Plus Query: 263 cagatggtaatggtaagagaagaagatgatcctgctccagaaggagttgaatacaagcat 322 |||||| | |||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 48 cagatgattatggtaagagaagaagatgatcctgctccagaaggaattgaatacacacat 107 Query: 323 ggacttactcctccaatgagggatgcacgcaggcgacgttttcgcagagagcctgactt 381 || |||||||||||||||||||||||||| ||||| ||||| || |||||||||||||| Sbjct: 108 ggtcttactcctccaatgagggatgcacgaaggcggcgtttccggagagagcctgactt 166 Score = 63.9 bits (32), Expect = 8e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 489 gcaagaaagctgcaccagctcctgtacccaagcctgacgttcaagagcctgctgcaaatg 548 |||||||||||||||| ||||| | | |||||| | | |||||| || |||||||| | Sbjct: 838 gcaagaaagctgcacctgctccagcaaccaagcgtaatgttcaacgacccgctgcaaacg 897 Query: 549 gcgaagaagctgacgctgataggagcgactctgatgagtc 588 | ||||||||||| || || ||||| |||||||||||||| Sbjct: 898 gtgaagaagctgaggcagagaggagtgactctgatgagtc 937 Score = 50.1 bits (25), Expect = 0.012 Identities = 46/53 (86%) Strand = Plus / Plus Query: 386 gcagagcttgttcaccgagttgagaaggatcttatgagtattatgcaaggagt 438 ||||| || |||||||||||||| ||| |||| |||| ||||||||| ||||| Sbjct: 254 gcagaactggttcaccgagttgaaaagcatctcatgaatattatgcatggagt 306
>gb|DQ207871.1| Solanum tuberosum clone 088D10 unknown mRNA Length = 1271 Score = 52.0 bits (26), Expect = 0.003 Identities = 95/118 (80%) Strand = Plus / Plus Query: 258 ttggtcagatggtaatggtaagagaagaagatgatcctgctccagaaggagttgaataca 317 ||||||| ||| | ||||| |||||||||| ||||||| |||||| | || ||||| | Sbjct: 617 ttggtcaaatgattatggtgagagaagaaggggatcctgttccagatgtggtggaatata 676 Query: 318 agcatggacttactcctccaatgagggatgcacgcaggcgacgttttcgcagagagcc 375 ||||| || || ||||||||||| |||||||| || ||| | ||||| |||||||| Sbjct: 677 gacatggcctcacacctccaatgagagatgcacgaagacgaagatttcggagagagcc 734
>ref|NM_104405.2| Arabidopsis thaliana transcription factor (AT1G55300) mRNA, complete cds Length = 919 Score = 44.1 bits (22), Expect = 0.73 Identities = 37/42 (88%) Strand = Plus / Plus Query: 307 agttgaatacaagcatggacttactcctccaatgagggatgc 348 ||||||||||| ||||| || ||||||||||||| |||||| Sbjct: 455 agttgaatacagacatggtctaactcctccaatgaaggatgc 496
>ref|NM_001036117.1| Arabidopsis thaliana transcription factor (AT1G55300) mRNA, complete cds Length = 1053 Score = 44.1 bits (22), Expect = 0.73 Identities = 37/42 (88%) Strand = Plus / Plus Query: 307 agttgaatacaagcatggacttactcctccaatgagggatgc 348 ||||||||||| ||||| || ||||||||||||| |||||| Sbjct: 493 agttgaatacagacatggtctaactcctccaatgaaggatgc 534
>gb|BT015099.1| Arabidopsis thaliana At1g55300 gene, complete cds Length = 612 Score = 44.1 bits (22), Expect = 0.73 Identities = 37/42 (88%) Strand = Plus / Plus Query: 307 agttgaatacaagcatggacttactcctccaatgagggatgc 348 ||||||||||| ||||| || ||||||||||||| |||||| Sbjct: 291 agttgaatacagacatggtctaactcctccaatgaaggatgc 332
>gb|AY463622.1| Arabidopsis thaliana TAF7 (At1g55300) mRNA, partial cds Length = 609 Score = 44.1 bits (22), Expect = 0.73 Identities = 37/42 (88%) Strand = Plus / Plus Query: 307 agttgaatacaagcatggacttactcctccaatgagggatgc 348 ||||||||||| ||||| || ||||||||||||| |||||| Sbjct: 291 agttgaatacagacatggtctaactcctccaatgaaggatgc 332
>gb|BT011002.1| Arabidopsis thaliana At1g55300 gene, complete cds Length = 859 Score = 44.1 bits (22), Expect = 0.73 Identities = 37/42 (88%) Strand = Plus / Plus Query: 307 agttgaatacaagcatggacttactcctccaatgagggatgc 348 ||||||||||| ||||| || ||||||||||||| |||||| Sbjct: 418 agttgaatacagacatggtctaactcctccaatgaaggatgc 459
>gb|AC122261.2| Mus musculus BAC clone RP23-187F24 from 15, complete sequence Length = 223801 Score = 44.1 bits (22), Expect = 0.73 Identities = 22/22 (100%) Strand = Plus / Plus Query: 123 ccttctcagaggatggaaggag 144 |||||||||||||||||||||| Sbjct: 198306 ccttctcagaggatggaaggag 198327
>gb|AC027034.10|AC027034 Arabidopsis thaliana chromosome 1 BAC F7A10 genomic sequence, complete sequence Length = 101954 Score = 44.1 bits (22), Expect = 0.73 Identities = 37/42 (88%) Strand = Plus / Plus Query: 307 agttgaatacaagcatggacttactcctccaatgagggatgc 348 ||||||||||| ||||| || ||||||||||||| |||||| Sbjct: 49692 agttgaatacagacatggtctaactcctccaatgaaggatgc 49733
>gb|AC190161.1| Gallus gallus chromosome Z clone CH261-177O19, complete sequence Length = 215449 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 635 gagcaaacccagtgtatgtatataa 659 ||||||| ||||||||||||||||| Sbjct: 104853 gagcaaagccagtgtatgtatataa 104829
>gb|BT017769.1| Zea mays clone EL01N0502D08.c mRNA sequence Length = 1522 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 637 gcaaacccagtgtatgtatat 657 ||||||||||||||||||||| Sbjct: 1421 gcaaacccagtgtatgtatat 1441
>ref|XM_845004.1| PREDICTED: Canis familiaris similar to skeletal muscle calsequestrin 1, transcript variant 1 (LOC608401), mRNA Length = 1928 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 547 tggcgaagaagctgacgctga 567 ||||||||||||||||||||| Sbjct: 937 tggcgaagaagctgacgctga 957
>ref|XM_855533.1| PREDICTED: Canis familiaris similar to skeletal muscle calsequestrin 1, transcript variant 2 (LOC608401), mRNA Length = 2009 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 547 tggcgaagaagctgacgctga 567 ||||||||||||||||||||| Sbjct: 937 tggcgaagaagctgacgctga 957 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 128,691,466 Number of extensions: 6767229 Number of successful extensions: 133490 Number of sequences better than 10.0: 25 Number of HSP's gapped: 133463 Number of HSP's successfully gapped: 53 Length of query: 766 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 744 Effective length of database: 18,508,616,841 Effective search space: 13770410929704 Effective search space used: 13770410929704 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
