ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf34g13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O69873:GLND_STRCO [Protein-PII] uridylyltransferase - Streptomyc... 32 4.8
2Q8NAA5:CQ076_HUMAN Leucine-rich repeat-containing protein C17orf... 32 6.3
3P55251:LEU2_RHIPU 3-isopropylmalate dehydratase - Rhizomucor pus... 32 6.3
4Q9EPI6:NELF_RAT Nasal embryonic luteinizing hormone-releasing ho... 32 8.2
5Q99NF2:NELF_MOUSE Nasal embryonic luteinizing hormone-releasing ... 32 8.2

>O69873:GLND_STRCO [Protein-PII] uridylyltransferase - Streptomyces coelicolor|
          Length = 835
 Score = 32.3 bits (72), Expect = 4.8
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = +1

Query: 232 SAPSSEQSRDREAGEAV**WGPMSVLRGCCRCPATRAATRSSPCCPGTPRSSSPVTTGQS 411
           +AP++EQ  +R A EA    GP+  LR     PA  A   SSP  P  P   SP+++  S
Sbjct: 584 AAPTAEQ--ERLAVEAFRTGGPVLALRAQTEPPADSAPAPSSPSSPSFP---SPLSSPSS 638

Query: 412 P 414
           P
Sbjct: 639 P 639



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>Q8NAA5:CQ076_HUMAN Leucine-rich repeat-containing protein C17orf76 - Homo sapiens|
           (Human)
          Length = 344

 Score = 32.0 bits (71), Expect = 6.3
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 354 LTVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLKNGVEV 500
           L+ LPR T + + GN  T++VL  L  ++K         W+ L N V++
Sbjct: 226 LSTLPRLTTLALNGNRLTRAVLRDLTDILKDPSKFPNVTWIDLGNNVDI 274



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>P55251:LEU2_RHIPU 3-isopropylmalate dehydratase - Rhizomucor pusillus|
          Length = 755

 Score = 32.0 bits (71), Expect = 6.3
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +1

Query: 58  PDRSICSDPIRFHPIRTSKQLDWIGLRSSSPIHAIAIAKLQI 183
           PD S  SDPIR   +   + LD+IGL+ ++P+  + I K+ I
Sbjct: 311 PDPSTVSDPIRRQAME--RALDYIGLKPNTPMQEVKIDKVFI 350



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>Q9EPI6:NELF_RAT Nasal embryonic luteinizing hormone-releasing hormone factor -|
           Rattus norvegicus (Rat)
          Length = 532

 Score = 31.6 bits (70), Expect = 8.2
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -2

Query: 374 VPGQHGELLVAALVAGQRQHPRRTDIGPHHHTASPASLSLLCSDEGADPEW*QWSGQR 201
           +PG   E +  A+V G+RQ  R     PHHH + P   S   S E        W+G R
Sbjct: 111 LPGSEAEAIELAVVKGRRQRERH----PHHH-SQPLRASPGSSREDISRPCQSWAGSR 163



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>Q99NF2:NELF_MOUSE Nasal embryonic luteinizing hormone-releasing hormone factor - Mus|
           musculus (Mouse)
          Length = 532

 Score = 31.6 bits (70), Expect = 8.2
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -2

Query: 374 VPGQHGELLVAALVAGQRQHPRRTDIGPHHHTASPASLSLLCSDEGADPEW*QWSGQR 201
           +PG   E +  A+V G+RQ  R     PHHH + P   S   S E        W+G R
Sbjct: 111 LPGSEAEAIELAVVKGRRQRERH----PHHH-SQPLRASPGSSREDISRPCQSWAGSR 163


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 205,557,621
Number of extensions: 4168958
Number of successful extensions: 15164
Number of sequences better than 10.0: 5
Number of HSP's gapped: 15116
Number of HSP's successfully gapped: 5
Length of query: 460
Length of database: 100,686,439
Length adjustment: 117
Effective length of query: 343
Effective length of database: 68,593,924
Effective search space: 23527715932
Effective search space used: 23527715932
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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