ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf31f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P93788:REMO_SOLTU Remorin - Solanum tuberosum (Potato) 72 3e-12
2Q52725:TRZA_RHOCO S-triazine hydrolase - Rhodococcus corallinus 32 2.4
3Q4V9L6:TM119_HUMAN Transmembrane protein 119 precursor - Homo sa... 32 3.2
4Q95216:HLTF_RABIT Helicase-like transcription factor - Oryctolag... 30 9.2

>P93788:REMO_SOLTU Remorin - Solanum tuberosum (Potato)|
          Length = 198
 Score = 72.0 bits (175), Expect = 3e-12
 Identities = 54/168 (32%), Positives = 69/168 (41%), Gaps = 16/168 (9%)
 Frame = +3

Query: 180 IAEEKAIV------PVH-----DDSKAIVAVVKDA-----EGTRGSSERDAYLTKIMSEK 311
           +A+EKAIV      P       DDSKA+V V   A     E   GS +RDA L ++ +EK
Sbjct: 29  VADEKAIVAPALPPPAEEKEKPDDSKALVVVETKAPEPADEKKEGSIDRDAVLARVATEK 88

Query: 312 RTTLINAWEESEKARAENRAAKNLSFITSWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 491
           R +LI AWEESEK++AEN+A K +S I +W                              
Sbjct: 89  RVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKM 148

Query: 492 XXXXXMLHKSXXXXXXXXXXXXXXXXXXXXXXXXKYRAKGEAPTKLFG 635
                +LHK                         KYRA G AP K+ G
Sbjct: 149 KNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILG 196



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>Q52725:TRZA_RHOCO S-triazine hydrolase - Rhodococcus corallinus|
          Length = 477

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -2

Query: 808 SNHPTG-KHTHTNGLQNTCTHTTNKSCTKAVSNNPNICTL*RSRVSMASSIHSSHAFRSP 632
           S+ PT   H  ++G+ +  T T++  CT         C++  S  +  ++  S H   +P
Sbjct: 61  SSTPTPTSHKSSSGVVHPMTATSSNGCTT--------CSIPASLPTQTTTSESEHCCTAP 112

Query: 631 KSFVGASPLA 602
           K FV ASPL+
Sbjct: 113 KPFVLASPLS 122



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>Q4V9L6:TM119_HUMAN Transmembrane protein 119 precursor - Homo sapiens (Human)|
          Length = 283

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 404 ARQGSGDGGRTEKDRGATGKEESSVQGEAEEQARDAP 514
           A  G GDG R  + RGA  +E+ S +G+ E Q    P
Sbjct: 189 AALGGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVP 225



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>Q95216:HLTF_RABIT Helicase-like transcription factor - Oryctolagus cuniculus (Rabbit)|
          Length = 1005

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 711 LLLTAFVHDLLVVCVHVFCKPLVCVC 788
           + L +    ++  C HVFCKP +C C
Sbjct: 759 ICLDSLTVPVITHCAHVFCKPCICQC 784


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 101,709,398
Number of extensions: 1921969
Number of successful extensions: 5919
Number of sequences better than 10.0: 4
Number of HSP's gapped: 5909
Number of HSP's successfully gapped: 4
Length of query: 281
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 169
Effective length of database: 69,965,399
Effective search space: 11824152431
Effective search space used: 11824152431
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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