| Clone Name | FLbaf31f01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT830320.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA015N03, full insert sequence Length = 951 Score = 329 bits (166), Expect = 9e-87 Identities = 375/444 (84%), Gaps = 3/444 (0%) Strand = Plus / Plus Query: 209 gcacgacgactccaaggccatcgtcgccgtcgtcaaggatgctgaaggtactagaggttc 268 ||||||||||||||||||||||||| |||||||||| ||||| | ||| ||||||| Sbjct: 217 gcacgacgactccaaggccatcgtcc---tcgtcaaggaagctgaggctacaggaggttc 273 Query: 269 gtctgaaagagatgcttatctcaccaagattatgtccgagaagagaacgacgctgatcaa 328 |||||||||||||||||||| | || ||| |||| ||||||||| | |||||||| Sbjct: 274 agctgaaagagatgcttatctcgcaaaaattgtgtcggagaagagattggtactgatcaa 333 Query: 329 cgcctgggaggagagcgagaaggcgagagctgagaacagggcggccaagaatctgtcctt 388 ||||||||||| |||||||| || ||||| |||||||||||||||||||| ||||| | Sbjct: 334 tgcctgggaggaaagcgagaaagctagagcagagaacagggcggccaagaagctgtcata 393 Query: 389 catcacttcatgggagcacgccaaggaagcggagatggaggccgaactgaaaaagatcga 448 |||||||||||||||| | || ||| |||| ||||||||||| || ||||||| |||||| Sbjct: 394 catcacttcatgggagaatgcaaagaaagcagagatggaggctgagctgaaaaggatcga 453 Query: 449 ggagcaactggaaaagaagaaagcagcgtacaaggagaagctgaagaacaagctcgcgat 508 | | ||||||| |||||||| || |||||| | |||||||||||||||||||| || | Sbjct: 454 gcaagaactggagaagaagaaggcggcgtacgaagagaagctgaagaacaagctggcatt 513 Query: 509 gctccacaagtcggcggaggagaagagagcgatggcggaggcgaagcgaggcgaggagat 568 ||| |||||| |||||||||||||||| ||| | | ||||||||| ||||||||| | Sbjct: 514 gctgcacaagacggcggaggagaagagggcgctcaccacggcgaagcgtggcgaggagct 573 Query: 569 aatcatggcggaggagatggcagccaagtaccgtgccaaaggcgaagccccgacgaagct 628 |||||||||||||||||||| |||||||||||||| || ||||| || ||||||||||| Sbjct: 574 gatcatggcggaggagatggccgccaagtaccgtgcaaagggcgaggctccgacgaagct 633 Query: 629 ctttgggctcctgaaagcatgaga 652 || |||||| ||||||| ||||| Sbjct: 634 gttcgggctcttgaaagcctgaga 657 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Plus Query: 171 accaaggacatcgccgaggagaaggc 196 ||||||||||||||||| |||||||| Sbjct: 158 accaaggacatcgccgaagagaaggc 183
>ref|NM_001055257.1| Oryza sativa (japonica cultivar-group) Os03g0111200 (Os03g0111200) mRNA, complete cds Length = 1031 Score = 329 bits (166), Expect = 9e-87 Identities = 375/444 (84%), Gaps = 3/444 (0%) Strand = Plus / Plus Query: 209 gcacgacgactccaaggccatcgtcgccgtcgtcaaggatgctgaaggtactagaggttc 268 ||||||||||||||||||||||||| |||||||||| ||||| | ||| ||||||| Sbjct: 329 gcacgacgactccaaggccatcgtcc---tcgtcaaggaagctgaggctacaggaggttc 385 Query: 269 gtctgaaagagatgcttatctcaccaagattatgtccgagaagagaacgacgctgatcaa 328 |||||||||||||||||||| | || ||| |||| ||||||||| | |||||||| Sbjct: 386 agctgaaagagatgcttatctcgcaaaaattgtgtcggagaagagattggtactgatcaa 445 Query: 329 cgcctgggaggagagcgagaaggcgagagctgagaacagggcggccaagaatctgtcctt 388 ||||||||||| |||||||| || ||||| |||||||||||||||||||| ||||| | Sbjct: 446 tgcctgggaggaaagcgagaaagctagagcagagaacagggcggccaagaagctgtcata 505 Query: 389 catcacttcatgggagcacgccaaggaagcggagatggaggccgaactgaaaaagatcga 448 |||||||||||||||| | || ||| |||| ||||||||||| || ||||||| |||||| Sbjct: 506 catcacttcatgggagaatgcaaagaaagcagagatggaggctgagctgaaaaggatcga 565 Query: 449 ggagcaactggaaaagaagaaagcagcgtacaaggagaagctgaagaacaagctcgcgat 508 | | ||||||| |||||||| || |||||| | |||||||||||||||||||| || | Sbjct: 566 gcaagaactggagaagaagaaggcggcgtacgaagagaagctgaagaacaagctggcatt 625 Query: 509 gctccacaagtcggcggaggagaagagagcgatggcggaggcgaagcgaggcgaggagat 568 ||| |||||| |||||||||||||||| ||| | | ||||||||| ||||||||| | Sbjct: 626 gctgcacaagacggcggaggagaagagggcgctcaccacggcgaagcgtggcgaggagct 685 Query: 569 aatcatggcggaggagatggcagccaagtaccgtgccaaaggcgaagccccgacgaagct 628 |||||||||||||||||||| |||||||||||||| || ||||| || ||||||||||| Sbjct: 686 gatcatggcggaggagatggccgccaagtaccgtgcaaagggcgaggctccgacgaagct 745 Query: 629 ctttgggctcctgaaagcatgaga 652 || |||||| ||||||| ||||| Sbjct: 746 gttcgggctcttgaaagcctgaga 769 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Plus Query: 171 accaaggacatcgccgaggagaaggc 196 ||||||||||||||||| |||||||| Sbjct: 270 accaaggacatcgccgaagagaaggc 295
>dbj|AK060379.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-D11, full insert sequence Length = 1037 Score = 329 bits (166), Expect = 9e-87 Identities = 375/444 (84%), Gaps = 3/444 (0%) Strand = Plus / Plus Query: 209 gcacgacgactccaaggccatcgtcgccgtcgtcaaggatgctgaaggtactagaggttc 268 ||||||||||||||||||||||||| |||||||||| ||||| | ||| ||||||| Sbjct: 335 gcacgacgactccaaggccatcgtcc---tcgtcaaggaagctgaggctacaggaggttc 391 Query: 269 gtctgaaagagatgcttatctcaccaagattatgtccgagaagagaacgacgctgatcaa 328 |||||||||||||||||||| | || ||| |||| ||||||||| | |||||||| Sbjct: 392 agctgaaagagatgcttatctcgcaaaaattgtgtcggagaagagattggtactgatcaa 451 Query: 329 cgcctgggaggagagcgagaaggcgagagctgagaacagggcggccaagaatctgtcctt 388 ||||||||||| |||||||| || ||||| |||||||||||||||||||| ||||| | Sbjct: 452 tgcctgggaggaaagcgagaaagctagagcagagaacagggcggccaagaagctgtcata 511 Query: 389 catcacttcatgggagcacgccaaggaagcggagatggaggccgaactgaaaaagatcga 448 |||||||||||||||| | || ||| |||| ||||||||||| || ||||||| |||||| Sbjct: 512 catcacttcatgggagaatgcaaagaaagcagagatggaggctgagctgaaaaggatcga 571 Query: 449 ggagcaactggaaaagaagaaagcagcgtacaaggagaagctgaagaacaagctcgcgat 508 | | ||||||| |||||||| || |||||| | |||||||||||||||||||| || | Sbjct: 572 gcaagaactggagaagaagaaggcggcgtacgaagagaagctgaagaacaagctggcatt 631 Query: 509 gctccacaagtcggcggaggagaagagagcgatggcggaggcgaagcgaggcgaggagat 568 ||| |||||| |||||||||||||||| ||| | | ||||||||| ||||||||| | Sbjct: 632 gctgcacaagacggcggaggagaagagggcgctcaccacggcgaagcgtggcgaggagct 691 Query: 569 aatcatggcggaggagatggcagccaagtaccgtgccaaaggcgaagccccgacgaagct 628 |||||||||||||||||||| |||||||||||||| || ||||| || ||||||||||| Sbjct: 692 gatcatggcggaggagatggccgccaagtaccgtgcaaagggcgaggctccgacgaagct 751 Query: 629 ctttgggctcctgaaagcatgaga 652 || |||||| ||||||| ||||| Sbjct: 752 gttcgggctcttgaaagcctgaga 775 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Plus Query: 171 accaaggacatcgccgaggagaaggc 196 ||||||||||||||||| |||||||| Sbjct: 276 accaaggacatcgccgaagagaaggc 301
>dbj|AK241143.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065111M09, full insert sequence Length = 3553 Score = 321 bits (162), Expect = 2e-84 Identities = 374/444 (84%), Gaps = 3/444 (0%) Strand = Plus / Minus Query: 209 gcacgacgactccaaggccatcgtcgccgtcgtcaaggatgctgaaggtactagaggttc 268 ||||||||||||||||||||||||| |||||||||| ||||| | ||| ||||||| Sbjct: 2118 gcacgacgactccaaggccatcgtcc---tcgtcaaggaagctgaggctacaggaggttc 2062 Query: 269 gtctgaaagagatgcttatctcaccaagattatgtccgagaagagaacgacgctgatcaa 328 |||||||||||||||||||| | || ||| |||| ||||||||| | |||||||| Sbjct: 2061 agctgaaagagatgcttatctcgcaaaaattgtgtcggagaagagattggtactgatcaa 2002 Query: 329 cgcctgggaggagagcgagaaggcgagagctgagaacagggcggccaagaatctgtcctt 388 ||||||||||| |||||||| || ||||| |||||||||||||||||||| ||||| | Sbjct: 2001 tgcctgggaggaaagcgagaaagctagagcagagaacagggcggccaagaagctgtcata 1942 Query: 389 catcacttcatgggagcacgccaaggaagcggagatggaggccgaactgaaaaagatcga 448 |||||||||||||||| | || ||| |||| ||||||||||| || ||||||| |||||| Sbjct: 1941 catcacttcatgggagaatgcaaagaaagcagagatggaggctgagctgaaaaggatcga 1882 Query: 449 ggagcaactggaaaagaagaaagcagcgtacaaggagaagctgaagaacaagctcgcgat 508 | | ||||||| |||||||| || |||||| | |||||||||||||||||||| || | Sbjct: 1881 gcaagaactggagaagaagaaggcggcgtacgaagagaagctgaagaacaagctggcatt 1822 Query: 509 gctccacaagtcggcggaggagaagagagcgatggcggaggcgaagcgaggcgaggagat 568 ||| |||||| |||||||||||||||| ||| | | ||||||||| ||||||||| | Sbjct: 1821 gctgcacaagacggcggaggagaagagggcgctcaccacggcgaagcgtggcgaggagct 1762 Query: 569 aatcatggcggaggagatggcagccaagtaccgtgccaaaggcgaagccccgacgaagct 628 |||||||||||||||||||| ||||||||| |||| || ||||| || ||||||||||| Sbjct: 1761 gatcatggcggaggagatggccgccaagtactgtgcaaagggcgaggctccgacgaagct 1702 Query: 629 ctttgggctcctgaaagcatgaga 652 || |||||| ||||||| ||||| Sbjct: 1701 gttcgggctcttgaaagcctgaga 1678 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Minus Query: 171 accaaggacatcgccgaggagaaggc 196 ||||||||||||||||| |||||||| Sbjct: 2177 accaaggacatcgccgaagagaaggc 2152
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 165 bits (83), Expect = 3e-37 Identities = 170/199 (85%) Strand = Plus / Minus Query: 454 aactggaaaagaagaaagcagcgtacaaggagaagctgaagaacaagctcgcgatgctcc 513 ||||||| |||||||| || |||||| | |||||||||||||||||||| || |||| | Sbjct: 625805 aactggagaagaagaaggcggcgtacgaagagaagctgaagaacaagctggcattgctgc 625746 Query: 514 acaagtcggcggaggagaagagagcgatggcggaggcgaagcgaggcgaggagataatca 573 ||||| |||||||||||||||| ||| | | ||||||||| ||||||||| | |||| Sbjct: 625745 acaagacggcggaggagaagagggcgctcaccacggcgaagcgtggcgaggagctgatca 625686 Query: 574 tggcggaggagatggcagccaagtaccgtgccaaaggcgaagccccgacgaagctctttg 633 |||||||||||||||| |||||||||||||| || ||||| || ||||||||||| || | Sbjct: 625685 tggcggaggagatggccgccaagtaccgtgcaaagggcgaggctccgacgaagctgttcg 625626 Query: 634 ggctcctgaaagcatgaga 652 ||||| ||||||| ||||| Sbjct: 625625 ggctcttgaaagcctgaga 625607 Score = 85.7 bits (43), Expect = 2e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 364 acagggcggccaagaatctgtccttcatcacttcatgggagcacgccaaggaagcggaga 423 |||||||||||||||| ||||| | |||||||||||||||| | || ||| |||| |||| Sbjct: 626004 acagggcggccaagaagctgtcatacatcacttcatgggagaatgcaaagaaagcagaga 625945 Query: 424 tggaggccgaactgaaaaagatcgagg 450 ||||||| || ||||||| |||||||| Sbjct: 625944 tggaggctgagctgaaaaggatcgagg 625918 Score = 61.9 bits (31), Expect = 3e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 278 agatgcttatctcaccaagattatgtccgagaagagaacgacgctgatcaacgcctggga 337 ||||||||||||| | || ||| |||| ||||||||| | |||||||| |||||||| Sbjct: 626392 agatgcttatctcgcaaaaattgtgtcggagaagagattggtactgatcaatgcctggga 626333 Query: 338 ggagagcgagaaggcgagagctgagaacagg 368 ||| |||||||| || ||||| ||||||||| Sbjct: 626332 ggaaagcgagaaagctagagcagagaacagg 626302 Score = 50.1 bits (25), Expect = 0.013 Identities = 25/25 (100%) Strand = Plus / Minus Query: 209 gcacgacgactccaaggccatcgtc 233 ||||||||||||||||||||||||| Sbjct: 627480 gcacgacgactccaaggccatcgtc 627456 Score = 48.1 bits (24), Expect = 0.052 Identities = 36/40 (90%) Strand = Plus / Minus Query: 521 ggcggaggagaagagagcgatggcggaggcgaagcgaggc 560 ||||||||||||||| ||| ||||||||||||| ||||| Sbjct: 33577992 ggcggaggagaagagggcgtcggcggaggcgaagagaggc 33577953 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Minus Query: 171 accaaggacatcgccgaggagaaggc 196 ||||||||||||||||| |||||||| Sbjct: 627539 accaaggacatcgccgaagagaaggc 627514
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16, complete sequence Length = 160053 Score = 165 bits (83), Expect = 3e-37 Identities = 170/199 (85%) Strand = Plus / Minus Query: 454 aactggaaaagaagaaagcagcgtacaaggagaagctgaagaacaagctcgcgatgctcc 513 ||||||| |||||||| || |||||| | |||||||||||||||||||| || |||| | Sbjct: 11688 aactggagaagaagaaggcggcgtacgaagagaagctgaagaacaagctggcattgctgc 11629 Query: 514 acaagtcggcggaggagaagagagcgatggcggaggcgaagcgaggcgaggagataatca 573 ||||| |||||||||||||||| ||| | | ||||||||| ||||||||| | |||| Sbjct: 11628 acaagacggcggaggagaagagggcgctcaccacggcgaagcgtggcgaggagctgatca 11569 Query: 574 tggcggaggagatggcagccaagtaccgtgccaaaggcgaagccccgacgaagctctttg 633 |||||||||||||||| |||||||||||||| || ||||| || ||||||||||| || | Sbjct: 11568 tggcggaggagatggccgccaagtaccgtgcaaagggcgaggctccgacgaagctgttcg 11509 Query: 634 ggctcctgaaagcatgaga 652 ||||| ||||||| ||||| Sbjct: 11508 ggctcttgaaagcctgaga 11490 Score = 85.7 bits (43), Expect = 2e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 364 acagggcggccaagaatctgtccttcatcacttcatgggagcacgccaaggaagcggaga 423 |||||||||||||||| ||||| | |||||||||||||||| | || ||| |||| |||| Sbjct: 11887 acagggcggccaagaagctgtcatacatcacttcatgggagaatgcaaagaaagcagaga 11828 Query: 424 tggaggccgaactgaaaaagatcgagg 450 ||||||| || ||||||| |||||||| Sbjct: 11827 tggaggctgagctgaaaaggatcgagg 11801 Score = 61.9 bits (31), Expect = 3e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 278 agatgcttatctcaccaagattatgtccgagaagagaacgacgctgatcaacgcctggga 337 ||||||||||||| | || ||| |||| ||||||||| | |||||||| |||||||| Sbjct: 12275 agatgcttatctcgcaaaaattgtgtcggagaagagattggtactgatcaatgcctggga 12216 Query: 338 ggagagcgagaaggcgagagctgagaacagg 368 ||| |||||||| || ||||| ||||||||| Sbjct: 12215 ggaaagcgagaaagctagagcagagaacagg 12185 Score = 50.1 bits (25), Expect = 0.013 Identities = 25/25 (100%) Strand = Plus / Minus Query: 209 gcacgacgactccaaggccatcgtc 233 ||||||||||||||||||||||||| Sbjct: 13363 gcacgacgactccaaggccatcgtc 13339 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Minus Query: 171 accaaggacatcgccgaggagaaggc 196 ||||||||||||||||| |||||||| Sbjct: 13422 accaaggacatcgccgaagagaaggc 13397
>emb|CT829002.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104B15, full insert sequence Length = 1009 Score = 99.6 bits (50), Expect = 2e-17 Identities = 143/174 (82%) Strand = Plus / Plus Query: 433 aactgaaaaagatcgaggagcaactggaaaagaagaaagcagcgtacaaggagaagctga 492 ||||||| ||||| ||||||||||||||||||||||| || | || |||||| ||| Sbjct: 513 aactgaagaagattgaggagcaactggaaaagaagaaggctgaatatgcagagaagatga 572 Query: 493 agaacaagctcgcgatgctccacaagtcggcggaggagaagagagcgatggcggaggcga 552 ||||||| ||||||| |||||||| || |||||||||||||| |||| ||||| | Sbjct: 573 agaacaaagtcgcgatcgtccacaaggaagctgaggagaagagagcaatggtcgaggcaa 632 Query: 553 agcgaggcgaggagataatcatggcggaggagatggcagccaagtaccgtgcca 606 |||| |||||||| | | | ||| |||||||||||||||||||||||||||| Sbjct: 633 agcgcggcgaggaagtcctaaaggccgaggagatggcagccaagtaccgtgcca 686 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 132 gaggaggcaaagaaggtggaggtggag 158 |||||||| |||||||||||||||||| Sbjct: 119 gaggaggccaagaaggtggaggtggag 145 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Plus Query: 172 ccaaggacatcgccgaggagaaggcc 197 |||||||| ||||||||||||||||| Sbjct: 198 ccaaggacgtcgccgaggagaaggcc 223
>ref|NM_001059944.1| Oryza sativa (japonica cultivar-group) Os04g0533300 (Os04g0533300) mRNA, complete cds Length = 1013 Score = 99.6 bits (50), Expect = 2e-17 Identities = 143/174 (82%) Strand = Plus / Plus Query: 433 aactgaaaaagatcgaggagcaactggaaaagaagaaagcagcgtacaaggagaagctga 492 ||||||| ||||| ||||||||||||||||||||||| || | || |||||| ||| Sbjct: 528 aactgaagaagattgaggagcaactggaaaagaagaaggctgaatatgcagagaagatga 587 Query: 493 agaacaagctcgcgatgctccacaagtcggcggaggagaagagagcgatggcggaggcga 552 ||||||| ||||||| |||||||| || |||||||||||||| |||| ||||| | Sbjct: 588 agaacaaagtcgcgatcgtccacaaggaagctgaggagaagagagcaatggtcgaggcaa 647 Query: 553 agcgaggcgaggagataatcatggcggaggagatggcagccaagtaccgtgcca 606 |||| |||||||| | | | ||| |||||||||||||||||||||||||||| Sbjct: 648 agcgcggcgaggaagtcctaaaggccgaggagatggcagccaagtaccgtgcca 701 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 132 gaggaggcaaagaaggtggaggtggag 158 |||||||| |||||||||||||||||| Sbjct: 134 gaggaggccaagaaggtggaggtggag 160 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Plus Query: 172 ccaaggacatcgccgaggagaaggcc 197 |||||||| ||||||||||||||||| Sbjct: 213 ccaaggacgtcgccgaggagaaggcc 238
>dbj|AK106182.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D04, full insert sequence Length = 1013 Score = 99.6 bits (50), Expect = 2e-17 Identities = 143/174 (82%) Strand = Plus / Plus Query: 433 aactgaaaaagatcgaggagcaactggaaaagaagaaagcagcgtacaaggagaagctga 492 ||||||| ||||| ||||||||||||||||||||||| || | || |||||| ||| Sbjct: 528 aactgaagaagattgaggagcaactggaaaagaagaaggctgaatatgcagagaagatga 587 Query: 493 agaacaagctcgcgatgctccacaagtcggcggaggagaagagagcgatggcggaggcga 552 ||||||| ||||||| |||||||| || |||||||||||||| |||| ||||| | Sbjct: 588 agaacaaagtcgcgatcgtccacaaggaagctgaggagaagagagcaatggtcgaggcaa 647 Query: 553 agcgaggcgaggagataatcatggcggaggagatggcagccaagtaccgtgcca 606 |||| |||||||| | | | ||| |||||||||||||||||||||||||||| Sbjct: 648 agcgcggcgaggaagtcctaaaggccgaggagatggcagccaagtaccgtgcca 701 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 132 gaggaggcaaagaaggtggaggtggag 158 |||||||| |||||||||||||||||| Sbjct: 134 gaggaggccaagaaggtggaggtggag 160 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Plus Query: 172 ccaaggacatcgccgaggagaaggcc 197 |||||||| ||||||||||||||||| Sbjct: 213 ccaaggacgtcgccgaggagaaggcc 238
>dbj|AK105097.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-B11, full insert sequence Length = 2569 Score = 99.6 bits (50), Expect = 2e-17 Identities = 143/174 (82%) Strand = Plus / Plus Query: 433 aactgaaaaagatcgaggagcaactggaaaagaagaaagcagcgtacaaggagaagctga 492 ||||||| ||||| ||||||||||||||||||||||| || | || |||||| ||| Sbjct: 522 aactgaagaagattgaggagcaactggaaaagaagaaggctgaatatgcagagaagatga 581 Query: 493 agaacaagctcgcgatgctccacaagtcggcggaggagaagagagcgatggcggaggcga 552 ||||||| ||||||| |||||||| || |||||||||||||| |||| ||||| | Sbjct: 582 agaacaaagtcgcgatcgtccacaaggaagctgaggagaagagagcaatggtcgaggcaa 641 Query: 553 agcgaggcgaggagataatcatggcggaggagatggcagccaagtaccgtgcca 606 |||| |||||||| | | | ||| |||||||||||||||||||||||||||| Sbjct: 642 agcgcggcgaggaagtcctaaaggccgaggagatggcagccaagtaccgtgcca 695 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 132 gaggaggcaaagaaggtggaggtggag 158 |||||||| |||||||||||||||||| Sbjct: 128 gaggaggccaagaaggtggaggtggag 154 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Plus Query: 172 ccaaggacatcgccgaggagaaggcc 197 |||||||| ||||||||||||||||| Sbjct: 207 ccaaggacgtcgccgaggagaaggcc 232
>dbj|AK104678.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-E03, full insert sequence Length = 895 Score = 99.6 bits (50), Expect = 2e-17 Identities = 143/174 (82%) Strand = Plus / Plus Query: 433 aactgaaaaagatcgaggagcaactggaaaagaagaaagcagcgtacaaggagaagctga 492 ||||||| ||||| ||||||||||||||||||||||| || | || |||||| ||| Sbjct: 413 aactgaagaagattgaggagcaactggaaaagaagaaggctgaatatgcagagaagatga 472 Query: 493 agaacaagctcgcgatgctccacaagtcggcggaggagaagagagcgatggcggaggcga 552 ||||||| ||||||| |||||||| || |||||||||||||| |||| ||||| | Sbjct: 473 agaacaaagtcgcgatcgtccacaaggaagctgaggagaagagagcaatggtcgaggcaa 532 Query: 553 agcgaggcgaggagataatcatggcggaggagatggcagccaagtaccgtgcca 606 |||| |||||||| | | | ||| |||||||||||||||||||||||||||| Sbjct: 533 agcgcggcgaggaagtcctaaaggccgaggagatggcagccaagtaccgtgcca 586 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 132 gaggaggcaaagaaggtggaggtggag 158 |||||||| |||||||||||||||||| Sbjct: 132 gaggaggccaagaaggtggaggtggag 158
>dbj|AK103947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B04, full insert sequence Length = 1012 Score = 99.6 bits (50), Expect = 2e-17 Identities = 143/174 (82%) Strand = Plus / Plus Query: 433 aactgaaaaagatcgaggagcaactggaaaagaagaaagcagcgtacaaggagaagctga 492 ||||||| ||||| ||||||||||||||||||||||| || | || |||||| ||| Sbjct: 530 aactgaagaagattgaggagcaactggaaaagaagaaggctgaatatgcagagaagatga 589 Query: 493 agaacaagctcgcgatgctccacaagtcggcggaggagaagagagcgatggcggaggcga 552 ||||||| ||||||| |||||||| || |||||||||||||| |||| ||||| | Sbjct: 590 agaacaaagtcgcgatcgtccacaaggaagctgaggagaagagagcaatggtcgaggcaa 649 Query: 553 agcgaggcgaggagataatcatggcggaggagatggcagccaagtaccgtgcca 606 |||| |||||||| | | | ||| |||||||||||||||||||||||||||| Sbjct: 650 agcgcggcgaggaagtcctaaaggccgaggagatggcagccaagtaccgtgcca 703 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 132 gaggaggcaaagaaggtggaggtggag 158 |||||||| |||||||||||||||||| Sbjct: 136 gaggaggccaagaaggtggaggtggag 162 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Plus Query: 172 ccaaggacatcgccgaggagaaggcc 197 |||||||| ||||||||||||||||| Sbjct: 215 ccaaggacgtcgccgaggagaaggcc 240
>dbj|AK065139.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002A11, full insert sequence Length = 1013 Score = 99.6 bits (50), Expect = 2e-17 Identities = 143/174 (82%) Strand = Plus / Plus Query: 433 aactgaaaaagatcgaggagcaactggaaaagaagaaagcagcgtacaaggagaagctga 492 ||||||| ||||| ||||||||||||||||||||||| || | || |||||| ||| Sbjct: 531 aactgaagaagattgaggagcaactggaaaagaagaaggctgaatatgcagagaagatga 590 Query: 493 agaacaagctcgcgatgctccacaagtcggcggaggagaagagagcgatggcggaggcga 552 ||||||| ||||||| |||||||| || |||||||||||||| |||| ||||| | Sbjct: 591 agaacaaagtcgcgatcgtccacaaggaagctgaggagaagagagcaatggtcgaggcaa 650 Query: 553 agcgaggcgaggagataatcatggcggaggagatggcagccaagtaccgtgcca 606 |||| |||||||| | | | ||| |||||||||||||||||||||||||||| Sbjct: 651 agcgcggcgaggaagtcctaaaggccgaggagatggcagccaagtaccgtgcca 704 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 132 gaggaggcaaagaaggtggaggtggag 158 |||||||| |||||||||||||||||| Sbjct: 137 gaggaggccaagaaggtggaggtggag 163 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Plus Query: 172 ccaaggacatcgccgaggagaaggcc 197 |||||||| ||||||||||||||||| Sbjct: 216 ccaaggacgtcgccgaggagaaggcc 241
>dbj|AK061351.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-F11, full insert sequence Length = 895 Score = 99.6 bits (50), Expect = 2e-17 Identities = 143/174 (82%) Strand = Plus / Plus Query: 433 aactgaaaaagatcgaggagcaactggaaaagaagaaagcagcgtacaaggagaagctga 492 ||||||| ||||| ||||||||||||||||||||||| || | || |||||| ||| Sbjct: 413 aactgaagaagattgaggagcaactggaaaagaagaaggctgaatatgcagagaagatga 472 Query: 493 agaacaagctcgcgatgctccacaagtcggcggaggagaagagagcgatggcggaggcga 552 ||||||| ||||||| |||||||| || |||||||||||||| |||| ||||| | Sbjct: 473 agaacaaagtcgcgatcgtccacaaggaagctgaggagaagagagcaatggtcgaggcaa 532 Query: 553 agcgaggcgaggagataatcatggcggaggagatggcagccaagtaccgtgcca 606 |||| |||||||| | | | ||| |||||||||||||||||||||||||||| Sbjct: 533 agcgcggcgaggaagtcctaaaggccgaggagatggcagccaagtaccgtgcca 586 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 132 gaggaggcaaagaaggtggaggtggag 158 |||||||| |||||||||||||||||| Sbjct: 132 gaggaggccaagaaggtggaggtggag 158
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 85.7 bits (43), Expect = 2e-13 Identities = 130/159 (81%) Strand = Plus / Minus Query: 448 aggagcaactggaaaagaagaaagcagcgtacaaggagaagctgaagaacaagctcgcga 507 |||||||||||||||||||||| || | || |||||| |||||||||| |||||| Sbjct: 26638640 aggagcaactggaaaagaagaaggctgaatatgcagagaagatgaagaacaaagtcgcga 26638581 Query: 508 tgctccacaagtcggcggaggagaagagagcgatggcggaggcgaagcgaggcgaggaga 567 | |||||||| || |||||||||||||| |||| ||||| ||||| |||||||| Sbjct: 26638580 tcgtccacaaggaagctgaggagaagagagcaatggtcgaggcaaagcgcggcgaggaag 26638521 Query: 568 taatcatggcggaggagatggcagccaagtaccgtgcca 606 | | | ||| |||||||||||||||||||||||||||| Sbjct: 26638520 tcctaaaggccgaggagatggcagccaagtaccgtgcca 26638482 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Minus Query: 132 gaggaggcaaagaaggtggaggtggag 158 |||||||| |||||||||||||||||| Sbjct: 26641517 gaggaggccaagaaggtggaggtggag 26641491 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Minus Query: 172 ccaaggacatcgccgaggagaaggcc 197 |||||||| ||||||||||||||||| Sbjct: 26641438 ccaaggacgtcgccgaggagaaggcc 26641413
>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24, complete sequence Length = 121056 Score = 85.7 bits (43), Expect = 2e-13 Identities = 130/159 (81%) Strand = Plus / Minus Query: 448 aggagcaactggaaaagaagaaagcagcgtacaaggagaagctgaagaacaagctcgcga 507 |||||||||||||||||||||| || | || |||||| |||||||||| |||||| Sbjct: 78198 aggagcaactggaaaagaagaaggctgaatatgcagagaagatgaagaacaaagtcgcga 78139 Query: 508 tgctccacaagtcggcggaggagaagagagcgatggcggaggcgaagcgaggcgaggaga 567 | |||||||| || |||||||||||||| |||| ||||| ||||| |||||||| Sbjct: 78138 tcgtccacaaggaagctgaggagaagagagcaatggtcgaggcaaagcgcggcgaggaag 78079 Query: 568 taatcatggcggaggagatggcagccaagtaccgtgcca 606 | | | ||| |||||||||||||||||||||||||||| Sbjct: 78078 tcctaaaggccgaggagatggcagccaagtaccgtgcca 78040 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Minus Query: 132 gaggaggcaaagaaggtggaggtggag 158 |||||||| |||||||||||||||||| Sbjct: 81075 gaggaggccaagaaggtggaggtggag 81049 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Minus Query: 172 ccaaggacatcgccgaggagaaggcc 197 |||||||| ||||||||||||||||| Sbjct: 80996 ccaaggacgtcgccgaggagaaggcc 80971
>gb|AY112172.1| Zea mays CL4013_1 mRNA sequence Length = 734 Score = 81.8 bits (41), Expect = 4e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 558 ggcgaggagataatcatggcggaggagatggcagccaagtaccgtgccaaaggcgaagcc 617 |||||||||| ||| |||||||||||||||| ||||||||||| ||||| ||||| | | Sbjct: 471 ggcgaggagaccatcctggcggaggagatggccgccaagtaccgagccaagggcgagggc 530 Query: 618 ccgacgaagctctttgggctcctgaaagc 646 || || ||||||||||| ||| ||||||| Sbjct: 531 cccaccaagctctttggcctcttgaaagc 559 Score = 75.8 bits (38), Expect = 2e-10 Identities = 77/90 (85%) Strand = Plus / Plus Query: 279 gatgcttatctcaccaagattatgtccgagaagagaacgacgctgatcaacgcctgggag 338 |||||||| ||| ||||||| ||||||||||||| || ||||||| |||||||||| Sbjct: 274 gatgcttacctcgccaagatcgtgtccgagaagaggctgagtctgatcaccgcctgggag 333 Query: 339 gagagcgagaaggcgagagctgagaacagg 368 |||||| ||||||||||||| || |||||| Sbjct: 334 gagagccagaaggcgagagccgacaacagg 363 Score = 71.9 bits (36), Expect = 4e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 448 aggagcaactggaaaagaagaaagcagcgtacaaggagaagctgaagaacaagctcgcga 507 ||||||||||| | |||||||| || |||||| |||||||||| ||||||||||| |||| Sbjct: 361 aggagcaactgcagaagaagaaggcggcgtacgaggagaagctcaagaacaagctggcga 420 Query: 508 tgct 511 |||| Sbjct: 421 tgct 424 Score = 61.9 bits (31), Expect = 3e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 167 ggccaccaaggacatcgccgaggagaaggccatcgtgcc 205 |||| |||||||||||||||||||||||||| ||||||| Sbjct: 168 ggccgccaaggacatcgccgaggagaaggccgtcgtgcc 206 Score = 52.0 bits (26), Expect = 0.003 Identities = 40/44 (90%), Gaps = 3/44 (6%) Strand = Plus / Plus Query: 211 acgacgactccaaggccatcgtcgc---cgtcgtcaaggatgct 251 ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 236 acgacgactccaaggccatcgtcgctcttgtcgtcaaggatgct 279
>ref|NM_001055111.1| Oryza sativa (japonica cultivar-group) Os02g0824500 (Os02g0824500) mRNA, complete cds Length = 975 Score = 67.9 bits (34), Expect = 6e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 511 tccacaagtcggcggaggagaagagagcgatggcggaggcgaagcgaggcgaggagataa 570 |||||||| |||||||||||||||| |||| || |||||||| ||| ||||||||||| Sbjct: 509 tccacaaggcggcggaggagaagagggcgacggtggaggcgacgcggcacgaggagataa 568 Query: 571 tcatggcggaggagatggcagccaag 596 ||| | ||||||||||| |||||| Sbjct: 569 tcaagtatgaggagatggccgccaag 594 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 322 tgatcaacgcctgggaggagagcgagaag 350 ||||||| || |||||||||||||||||| Sbjct: 320 tgatcaaggcgtgggaggagagcgagaag 348
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 67.9 bits (34), Expect = 6e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 511 tccacaagtcggcggaggagaagagagcgatggcggaggcgaagcgaggcgaggagataa 570 |||||||| |||||||||||||||| |||| || |||||||| ||| ||||||||||| Sbjct: 35443650 tccacaaggcggcggaggagaagagggcgacggtggaggcgacgcggcacgaggagataa 35443709 Query: 571 tcatggcggaggagatggcagccaag 596 ||| | ||||||||||| |||||| Sbjct: 35443710 tcaagtatgaggagatggccgccaag 35443735 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 322 tgatcaacgcctgggaggagagcgagaag 350 ||||||| || |||||||||||||||||| Sbjct: 35443237 tgatcaaggcgtgggaggagagcgagaag 35443265
>dbj|AP003989.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1063_D06 Length = 102439 Score = 67.9 bits (34), Expect = 6e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 511 tccacaagtcggcggaggagaagagagcgatggcggaggcgaagcgaggcgaggagataa 570 |||||||| |||||||||||||||| |||| || |||||||| ||| ||||||||||| Sbjct: 55171 tccacaaggcggcggaggagaagagggcgacggtggaggcgacgcggcacgaggagataa 55230 Query: 571 tcatggcggaggagatggcagccaag 596 ||| | ||||||||||| |||||| Sbjct: 55231 tcaagtatgaggagatggccgccaag 55256 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 322 tgatcaacgcctgggaggagagcgagaag 350 ||||||| || |||||||||||||||||| Sbjct: 54758 tgatcaaggcgtgggaggagagcgagaag 54786
>dbj|AK111296.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-A10, full insert sequence Length = 975 Score = 67.9 bits (34), Expect = 6e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 511 tccacaagtcggcggaggagaagagagcgatggcggaggcgaagcgaggcgaggagataa 570 |||||||| |||||||||||||||| |||| || |||||||| ||| ||||||||||| Sbjct: 509 tccacaaggcggcggaggagaagagggcgacggtggaggcgacgcggcacgaggagataa 568 Query: 571 tcatggcggaggagatggcagccaag 596 ||| | ||||||||||| |||||| Sbjct: 569 tcaagtatgaggagatggccgccaag 594 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 322 tgatcaacgcctgggaggagagcgagaag 350 ||||||| || |||||||||||||||||| Sbjct: 320 tgatcaaggcgtgggaggagagcgagaag 348
>gb|AY104872.1| Zea mays PCO106194 mRNA sequence Length = 1084 Score = 61.9 bits (31), Expect = 3e-06 Identities = 139/175 (79%) Strand = Plus / Plus Query: 432 gaactgaaaaagatcgaggagcaactggaaaagaagaaagcagcgtacaaggagaagctg 491 |||||||| ||||| ||||| ||||||||||||||||| || | || |||||| || Sbjct: 577 gaactgaagaagattgaggaacaactggaaaagaagaaggctgaatatgcagagaagatg 636 Query: 492 aagaacaagctcgcgatgctccacaagtcggcggaggagaagagagcgatggcggaggcg 551 ||||||||| | || ||| | |||||| || || |||||| ||||||||| |||||| Sbjct: 637 aagaacaaggttgcaatgatacacaaggaagccgaagagaagcgagcgatggtggaggca 696 Query: 552 aagcgaggcgaggagataatcatggcggaggagatggcagccaagtaccgtgcca 606 || || || |||||| | | | ||| ||||||||||| ||||||||||| |||| Sbjct: 697 aaacgcggtgaggaggtcctgaaggccgaggagatggctgccaagtaccgggcca 751 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 132 gaggaggcaaagaaggtggaggtggag 158 |||||||| |||||||||||||||||| Sbjct: 205 gaggaggccaagaaggtggaggtggag 231
>emb|AJ441302.1|OSA441302 Oryza sativa partial mRNA for putative remorin 1 protein (remorin1 gene) Length = 600 Score = 58.0 bits (29), Expect = 5e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 433 aactgaaaaagatcgaggagcaactggaaaagaagaa 469 ||||||| ||||| ||||||||||||||||||||||| Sbjct: 419 aactgaagaagattgaggagcaactggaaaagaagaa 455 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 132 gaggaggcaaagaaggtggaggtggag 158 |||||||| |||||||||||||||||| Sbjct: 25 gaggaggccaagaaggtggaggtggag 51 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Plus Query: 172 ccaaggacatcgccgaggagaaggcc 197 |||||||| ||||||||||||||||| Sbjct: 104 ccaaggacgtcgccgaggagaaggcc 129
>gb|AY110478.1| Zea mays CL5040_-4 mRNA sequence Length = 576 Score = 54.0 bits (27), Expect = 8e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 528 gagaagagagcgatggcggaggcgaagcgaggcgaggagataatcatggcggaggagatg 587 |||||| ||||||||| |||||| ||||| ||||||||| | | | ||| ||||||||| Sbjct: 322 gagaagcgagcgatggtggaggcaaagcgcggcgaggaggtcctgaaggccgaggagatg 263 Query: 588 gcagccaagta 598 || |||||||| Sbjct: 262 gctgccaagta 252 Score = 50.1 bits (25), Expect = 0.013 Identities = 34/37 (91%) Strand = Plus / Minus Query: 436 tgaaaaagatcgaggagcaactggaaaagaagaaagc 472 |||| ||||| ||||| |||||||||||||||||||| Sbjct: 414 tgaagaagattgaggaacaactggaaaagaagaaagc 378
>emb|CT831311.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA025A11, full insert sequence Length = 1295 Score = 48.1 bits (24), Expect = 0.052 Identities = 36/40 (90%) Strand = Plus / Plus Query: 521 ggcggaggagaagagagcgatggcggaggcgaagcgaggc 560 ||||||||||||||| ||| ||||||||||||| ||||| Sbjct: 896 ggcggaggagaagagggcgtcggcggaggcgaagagaggc 935
>ref|NM_001058185.1| Oryza sativa (japonica cultivar-group) Os03g0808300 (Os03g0808300) mRNA, complete cds Length = 1234 Score = 48.1 bits (24), Expect = 0.052 Identities = 36/40 (90%) Strand = Plus / Plus Query: 521 ggcggaggagaagagagcgatggcggaggcgaagcgaggc 560 ||||||||||||||| ||| ||||||||||||| ||||| Sbjct: 836 ggcggaggagaagagggcgtcggcggaggcgaagagaggc 875
>ref|NM_114753.1| Arabidopsis thaliana DNA binding (AT3G48940) mRNA, complete cds Length = 528 Score = 48.1 bits (24), Expect = 0.052 Identities = 33/36 (91%) Strand = Plus / Plus Query: 438 aaaaagatcgaggagcaactggaaaagaagaaagca 473 |||||||||||||||||||| | |||||||||||| Sbjct: 322 aaaaagatcgaggagcaactaaataagaagaaagca 357
>gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 genomic sequence, complete sequence Length = 41693 Score = 48.1 bits (24), Expect = 0.052 Identities = 36/40 (90%) Strand = Plus / Minus Query: 521 ggcggaggagaagagagcgatggcggaggcgaagcgaggc 560 ||||||||||||||| ||| ||||||||||||| ||||| Sbjct: 16709 ggcggaggagaagagggcgtcggcggaggcgaagagaggc 16670
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 48.1 bits (24), Expect = 0.052 Identities = 36/40 (90%) Strand = Plus / Plus Query: 521 ggcggaggagaagagagcgatggcggaggcgaagcgaggc 560 ||||||||||||||| ||| ||||||||||||| ||||| Sbjct: 10629 ggcggaggagaagagggcgtcggcggaggcgaagagaggc 10668
>dbj|AK109389.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F02, full insert sequence Length = 1234 Score = 48.1 bits (24), Expect = 0.052 Identities = 36/40 (90%) Strand = Plus / Plus Query: 521 ggcggaggagaagagagcgatggcggaggcgaagcgaggc 560 ||||||||||||||| ||| ||||||||||||| ||||| Sbjct: 836 ggcggaggagaagagggcgtcggcggaggcgaagagaggc 875
>emb|CT828516.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043L19, full insert sequence Length = 885 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 171 accaaggacatcgccgaggagaaggcc 197 |||||||||||||||||||||| |||| Sbjct: 266 accaaggacatcgccgaggagagggcc 292 Score = 46.1 bits (23), Expect = 0.20 Identities = 92/115 (80%) Strand = Plus / Plus Query: 319 cgctgatcaacgcctgggaggagagcgagaaggcgagagctgagaacagggcggccaaga 378 |||||||||| || |||||||||| ||| ||||| | || || |||| ||||||||||| Sbjct: 420 cgctgatcaaggcgtgggaggagaacgaaaaggccaaggccgacaacaaggcggccaaga 479 Query: 379 atctgtccttcatcacttcatgggagcacgccaaggaagcggagatggaggccga 433 | || || |||| | ||||||||| || |||||| || ||||| |||||||| Sbjct: 480 agttggccgacatcgcctcatgggagaactccaaggtggccgagatcgaggccga 534
>ref|NM_001071536.1| Oryza sativa (japonica cultivar-group) Os10g0503800 (Os10g0503800) mRNA, partial cds Length = 1021 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 171 accaaggacatcgccgaggagaaggcc 197 |||||||||||||||||||||| |||| Sbjct: 131 accaaggacatcgccgaggagagggcc 157 Score = 46.1 bits (23), Expect = 0.20 Identities = 92/115 (80%) Strand = Plus / Plus Query: 319 cgctgatcaacgcctgggaggagagcgagaaggcgagagctgagaacagggcggccaaga 378 |||||||||| || |||||||||| ||| ||||| | || || |||| ||||||||||| Sbjct: 285 cgctgatcaaggcgtgggaggagaacgaaaaggccaaggccgacaacaaggcggccaaga 344 Query: 379 atctgtccttcatcacttcatgggagcacgccaaggaagcggagatggaggccga 433 | || || |||| | ||||||||| || |||||| || ||||| |||||||| Sbjct: 345 agttggccgacatcgcctcatgggagaactccaaggtggccgagatcgaggccga 399
>ref|NM_115990.3| Arabidopsis thaliana binding (AT3G61260) mRNA, complete cds Length = 878 Score = 46.1 bits (23), Expect = 0.20 Identities = 29/31 (93%) Strand = Plus / Plus Query: 444 atcgaggagcaactggaaaagaagaaagcag 474 |||||||||||||| || ||||||||||||| Sbjct: 526 atcgaggagcaactagagaagaagaaagcag 556
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence Length = 178867 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Minus Query: 171 accaaggacatcgccgaggagaaggcc 197 |||||||||||||||||||||| |||| Sbjct: 25239 accaaggacatcgccgaggagagggcc 25213
>gb|AY062977.1| Arabidopsis thaliana putative DNA-binding protein (At3g61260) mRNA, complete cds Length = 670 Score = 46.1 bits (23), Expect = 0.20 Identities = 29/31 (93%) Strand = Plus / Plus Query: 444 atcgaggagcaactggaaaagaagaaagcag 474 |||||||||||||| || ||||||||||||| Sbjct: 439 atcgaggagcaactagagaagaagaaagcag 469
>gb|AF370346.1| Arabidopsis thaliana putative DNA-binding protein (At3g61260) mRNA, complete cds Length = 886 Score = 46.1 bits (23), Expect = 0.20 Identities = 29/31 (93%) Strand = Plus / Plus Query: 444 atcgaggagcaactggaaaagaagaaagcag 474 |||||||||||||| || ||||||||||||| Sbjct: 517 atcgaggagcaactagagaagaagaaagcag 547
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Minus Query: 171 accaaggacatcgccgaggagaaggcc 197 |||||||||||||||||||||| |||| Sbjct: 91097 accaaggacatcgccgaggagagggcc 91071
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Minus Query: 171 accaaggacatcgccgaggagaaggcc 197 |||||||||||||||||||||| |||| Sbjct: 18729819 accaaggacatcgccgaggagagggcc 18729793
>gb|AY088061.1| Arabidopsis thaliana clone 40796 mRNA, complete sequence Length = 862 Score = 46.1 bits (23), Expect = 0.20 Identities = 29/31 (93%) Strand = Plus / Plus Query: 444 atcgaggagcaactggaaaagaagaaagcag 474 |||||||||||||| || ||||||||||||| Sbjct: 517 atcgaggagcaactagagaagaagaaagcag 547
>dbj|AK073955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075A20, full insert sequence Length = 1022 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 171 accaaggacatcgccgaggagaaggcc 197 |||||||||||||||||||||| |||| Sbjct: 132 accaaggacatcgccgaggagagggcc 158 Score = 46.1 bits (23), Expect = 0.20 Identities = 92/115 (80%) Strand = Plus / Plus Query: 319 cgctgatcaacgcctgggaggagagcgagaaggcgagagctgagaacagggcggccaaga 378 |||||||||| || |||||||||| ||| ||||| | || || |||| ||||||||||| Sbjct: 286 cgctgatcaaggcgtgggaggagaacgaaaaggccaaggccgacaacaaggcggccaaga 345 Query: 379 atctgtccttcatcacttcatgggagcacgccaaggaagcggagatggaggccga 433 | || || |||| | ||||||||| || |||||| || ||||| |||||||| Sbjct: 346 agttggccgacatcgcctcatgggagaactccaaggtggccgagatcgaggccga 400
>emb|BX823855.1|CNS0A4T9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS84ZA05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 871 Score = 46.1 bits (23), Expect = 0.20 Identities = 29/31 (93%) Strand = Plus / Plus Query: 444 atcgaggagcaactggaaaagaagaaagcag 474 |||||||||||||| || ||||||||||||| Sbjct: 526 atcgaggagcaactagagaagaagaaagcag 556
>emb|CT831514.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129B22, full insert sequence Length = 1884 Score = 44.1 bits (22), Expect = 0.81 Identities = 22/22 (100%) Strand = Plus / Minus Query: 149 ggaggtggagacgacgacggcc 170 |||||||||||||||||||||| Sbjct: 1204 ggaggtggagacgacgacggcc 1183
>ref|NM_001073394.1| Oryza sativa (japonica cultivar-group) Os12g0510300 (Os12g0510300) mRNA, complete cds Length = 630 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Minus Query: 86 tcgaatcgaattcgaagctagcaacc 111 |||||||||||||||||| ||||||| Sbjct: 436 tcgaatcgaattcgaagcaagcaacc 411
>ref|NM_001067656.1| Oryza sativa (japonica cultivar-group) Os08g0177000 (Os08g0177000) mRNA, complete cds Length = 1327 Score = 44.1 bits (22), Expect = 0.81 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 ggaggtggagacgacgacggcc 170 |||||||||||||||||||||| Sbjct: 526 ggaggtggagacgacgacggcc 547
>ref|NM_001067655.1| Oryza sativa (japonica cultivar-group) Os08g0176900 (Os08g0176900) mRNA, complete cds Length = 1974 Score = 44.1 bits (22), Expect = 0.81 Identities = 22/22 (100%) Strand = Plus / Minus Query: 149 ggaggtggagacgacgacggcc 170 |||||||||||||||||||||| Sbjct: 1197 ggaggtggagacgacgacggcc 1176
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 44.1 bits (22), Expect = 0.81 Identities = 22/22 (100%) Strand = Plus / Minus Query: 143 gaaggtggaggtggagacgacg 164 |||||||||||||||||||||| Sbjct: 929851 gaaggtggaggtggagacgacg 929830
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Minus Query: 86 tcgaatcgaattcgaagctagcaacc 111 |||||||||||||||||| ||||||| Sbjct: 19701211 tcgaatcgaattcgaagcaagcaacc 19701186
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 44.1 bits (22), Expect = 0.81 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 ggaggtggagacgacgacggcc 170 |||||||||||||||||||||| Sbjct: 4500178 ggaggtggagacgacgacggcc 4500199
>dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1120_C08 Length = 150300 Score = 44.1 bits (22), Expect = 0.81 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 ggaggtggagacgacgacggcc 170 |||||||||||||||||||||| Sbjct: 24026 ggaggtggagacgacgacggcc 24047
>dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0583B06 Length = 134442 Score = 44.1 bits (22), Expect = 0.81 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 ggaggtggagacgacgacggcc 170 |||||||||||||||||||||| Sbjct: 66068 ggaggtggagacgacgacggcc 66089
>ref|XM_954673.1| Neurospora crassa OR74A hypothetical protein (NCU02340.1) partial mRNA Length = 834 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Minus Query: 213 gacgactccaaggccatcgtcgccgt 238 |||||||||||||||| ||||||||| Sbjct: 441 gacgactccaaggccagcgtcgccgt 416
>dbj|AK107399.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-D08, full insert sequence Length = 1327 Score = 44.1 bits (22), Expect = 0.81 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 ggaggtggagacgacgacggcc 170 |||||||||||||||||||||| Sbjct: 526 ggaggtggagacgacgacggcc 547
>dbj|AK107028.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-A09, full insert sequence Length = 1974 Score = 44.1 bits (22), Expect = 0.81 Identities = 22/22 (100%) Strand = Plus / Minus Query: 149 ggaggtggagacgacgacggcc 170 |||||||||||||||||||||| Sbjct: 1197 ggaggtggagacgacgacggcc 1176
>gb|AC067937.1|AC067937 Neurospora crassa chromosome 7, clone X11-G8, complete sequence Length = 43556 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Plus Query: 213 gacgactccaaggccatcgtcgccgt 238 |||||||||||||||| ||||||||| Sbjct: 39285 gacgactccaaggccagcgtcgccgt 39310
>gb|AC067918.1|AC067918 Neurospora crassa chromosome 7, clone G23-F12, complete sequence Length = 42412 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Plus Query: 213 gacgactccaaggccatcgtcgccgt 238 |||||||||||||||| ||||||||| Sbjct: 788 gacgactccaaggccagcgtcgccgt 813
>emb|BX908788.1| Neurospora crassa DNA linkage group VII BAC clone B23N11 Length = 46353 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Plus Query: 213 gacgactccaaggccatcgtcgccgt 238 |||||||||||||||| ||||||||| Sbjct: 34992 gacgactccaaggccagcgtcgccgt 35017
>emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC OSJNBb0078B20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133659 Score = 44.1 bits (22), Expect = 0.81 Identities = 25/26 (96%) Strand = Plus / Plus Query: 86 tcgaatcgaattcgaagctagcaacc 111 |||||||||||||||||| ||||||| Sbjct: 25782 tcgaatcgaattcgaagcaagcaacc 25807
>ref|NM_001054089.1| Oryza sativa (japonica cultivar-group) Os02g0642200 (Os02g0642200) mRNA, complete cds Length = 907 Score = 42.1 bits (21), Expect = 3.2 Identities = 42/49 (85%) Strand = Plus / Plus Query: 322 tgatcaacgcctgggaggagagcgagaaggcgagagctgagaacagggc 370 ||||||| || |||||||||| ||| ||||| | ||| ||||||||||| Sbjct: 434 tgatcaaagcatgggaggagaacgaaaaggcaaaagcggagaacagggc 482
>emb|AM260480.1| Ralstonia eutropha H16 chromosome 2 Length = 2912490 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 aggccatcgtcgccgtcgtca 243 ||||||||||||||||||||| Sbjct: 722170 aggccatcgtcgccgtcgtca 722150
>ref|XM_001132844.1| PREDICTED: Homo sapiens similar to multimerin 2 (LOC732335), mRNA Length = 321 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 134 ggaggcaaagaaggtggaggtggag 158 ||||||||| ||||||||||||||| Sbjct: 294 ggaggcaaacaaggtggaggtggag 318
>gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome Length = 3225748 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 agagcagatggcggctgagga 136 ||||||||||||||||||||| Sbjct: 2317471 agagcagatggcggctgagga 2317491
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 579 gaggagatggcagccaagtaccgtg 603 ||||| ||||||||||||||||||| Sbjct: 2460635 gaggaaatggcagccaagtaccgtg 2460659
>gb|AC021077.5| Homo sapiens chromosome 5 clone CTB-77B1, complete sequence Length = 203134 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 387 ttcatcacttcatgggagcac 407 ||||||||||||||||||||| Sbjct: 99526 ttcatcacttcatgggagcac 99546
>emb|AL355312.24| Human DNA sequence from clone RP11-350J20 on chromosome 6 Contains gene FLJ13287, the PCMT1 gene for protein-L-isoaspartate (D-aspartate) O-methyltransferase,gene FLJ14735, a novel pseudogene, a novel gene, t-complex 1 (TCP1) pseudogene, the gene for lymphocyte effector toxicity activation ligand (LETAL), the 5' end of a novel gene, a novel pseudogene similar to FLJ13465 and four CpG islands, complete sequence Length = 188684 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 134 ggaggcaaagaaggtggaggtggag 158 ||||||||| ||||||||||||||| Sbjct: 186758 ggaggcaaacaaggtggaggtggag 186782
>emb|X74827.1|PSPPOBB Pseudomonas sp. pobB gene for 4-hydroxybenzoate 3-monooxygenase Length = 1620 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 ccaccaaggacatcgccgagg 189 ||||||||||||||||||||| Sbjct: 83 ccaccaaggacatcgccgagg 63
>emb|BX465863.11| Zebrafish DNA sequence from clone RP71-5C20 in linkage group 5, complete sequence Length = 117261 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 571 tcatggcggaggagatggcag 591 ||||||||||||||||||||| Sbjct: 21219 tcatggcggaggagatggcag 21239
>dbj|AK105194.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-E02, full insert sequence Length = 907 Score = 42.1 bits (21), Expect = 3.2 Identities = 42/49 (85%) Strand = Plus / Plus Query: 322 tgatcaacgcctgggaggagagcgagaaggcgagagctgagaacagggc 370 ||||||| || |||||||||| ||| ||||| | ||| ||||||||||| Sbjct: 434 tgatcaaagcatgggaggagaacgaaaaggcaaaagcggagaacagggc 482
>emb|AL132862.1|CEY73F8A Caenorhabditis elegans YAC Y73F8A, complete sequence Length = 322774 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 459 gaaaagaagaaagcagcgtacaaggagaa 487 |||||||||| | |||||||||||||||| Sbjct: 251875 gaaaagaagagaacagcgtacaaggagaa 251903 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 130,546,853 Number of extensions: 7358293 Number of successful extensions: 180742 Number of sequences better than 10.0: 68 Number of HSP's gapped: 180719 Number of HSP's successfully gapped: 131 Length of query: 845 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 823 Effective length of database: 18,508,616,841 Effective search space: 15232591660143 Effective search space used: 15232591660143 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)