Clone Information

BLAST Search Result

Clone Name	FLbaf28f05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AK100816:Os10g0491000	297	7e-81
2	AK059607:Os10g0491000	297	7e-81
3	Os10g0490800:Os10g0490800	274	5e-74
4	Os10g0490900:Os10g0490900	224	3e-61
5	Os05g0582000:Os05g0582000	40	0.002
6	AK100169:Os06g0486000	32	0.56
7	Os07g0195900:Os07g0195900	30	2.1
8	Os05g0464200:Os05g0464200	30	2.1
9	AK069352:Os02g0522800	27	2.6
10	Os06g0660800:Os06g0660800	30	2.8
11	Os04g0280200:Os04g0280200	30	2.8
12	AK107357:	30	2.8
13	AY344492:Os05g0530400	30	2.8
14	AK100412:Os05g0530400	30	2.8
15	AB050098:Os05g0530400	30	2.8
16	AB050096:Os05g0530400	30	2.8
17	AK067846:Os05g0300700	29	3.6
18	Os03g0861400:Os03g0861400	29	3.7
19	Os05g0573900:Os05g0573900	29	4.8
20	AK066544:Os07g0102100	29	4.8
21	AK067937:Os02g0786200	29	4.8
22	AK065232:Os03g0275500	29	4.8
23	AK111225:	28	6.2
24	AK105185:Os12g0176300	28	6.2
25	AK102985:Os03g0271800	28	6.2
26	Os05g0206600:Os05g0206600	28	8.2

>AK100816:Os10g0491000 |
          Length = 229
 Score =  297 bits (760), Expect = 7e-81
 Identities = 140/203 (68%), Positives = 164/203 (80%)
 Frame = +1

Query: 94  FDVTNEASSTAGGQRFDREYGAAYAKQVLSDASSFTWGIFNQPDPSDRRPADGDTVTLAV 273
           ++V+NEA+STAGGQRFDREYGA YAKQVL+ ASSFTW IF+QP  +DRRP D   V LAV
Sbjct: 27  YEVSNEAASTAGGQRFDREYGAGYAKQVLAAASSFTWSIFSQPSAADRRPVDA--VVLAV 84

Query: 274 RDTNGIASTSGSTIELSARSVGGITGDNLKEQVDGVLYHEVVHVWQWGLQDYHEHHGIFE 453
           RD +GIASTSG+TI L A  V G+TG++ K QV GVLYHEVVHVWQWGLQDY  H  ++E
Sbjct: 85  RDVDGIASTSGNTITLGAGYVAGVTGNDFKTQVTGVLYHEVVHVWQWGLQDYGAHSWVYE 144

Query: 454 GIADYVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNGKLKDGYN 633
           GIAD+VRL+AGY AA WV+ G G+ W++ Y VTARF DYCDS KPGFVA++N KLK+GYN
Sbjct: 145 GIADFVRLRAGYPAAGWVQPGQGNSWEDSYSVTARFFDYCDSVKPGFVADLNAKLKNGYN 204

Query: 634 DDYFVQILGTSADQLWNDYKAKY 702
            DYFVQI G +  QLW DYKAKY
Sbjct: 205 VDYFVQITGKTVQQLWQDYKAKY 227

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>AK059607:Os10g0491000 |
          Length = 229

 Score =  297 bits (760), Expect = 7e-81
 Identities = 140/203 (68%), Positives = 164/203 (80%)
 Frame = +1

Query: 94  FDVTNEASSTAGGQRFDREYGAAYAKQVLSDASSFTWGIFNQPDPSDRRPADGDTVTLAV 273
           ++V+NEA+STAGGQRFDREYGA YAKQVL+ ASSFTW IF+QP  +DRRP D   V LAV
Sbjct: 27  YEVSNEAASTAGGQRFDREYGAGYAKQVLAAASSFTWSIFSQPSAADRRPVDA--VVLAV 84

Query: 274 RDTNGIASTSGSTIELSARSVGGITGDNLKEQVDGVLYHEVVHVWQWGLQDYHEHHGIFE 453
           RD +GIASTSG+TI L A  V G+TG++ K QV GVLYHEVVHVWQWGLQDY  H  ++E
Sbjct: 85  RDVDGIASTSGNTITLGAGYVAGVTGNDFKTQVTGVLYHEVVHVWQWGLQDYGAHSWVYE 144

Query: 454 GIADYVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNGKLKDGYN 633
           GIAD+VRL+AGY AA WV+ G G+ W++ Y VTARF DYCDS KPGFVA++N KLK+GYN
Sbjct: 145 GIADFVRLRAGYPAAGWVQPGQGNSWEDSYSVTARFFDYCDSVKPGFVADLNAKLKNGYN 204

Query: 634 DDYFVQILGTSADQLWNDYKAKY 702
            DYFVQI G +  QLW DYKAKY
Sbjct: 205 VDYFVQITGKTVQQLWQDYKAKY 227

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>Os10g0490800:Os10g0490800 |
          Length = 228

 Score =  274 bits (701), Expect = 5e-74
 Identities = 134/206 (65%), Positives = 154/206 (74%), Gaps = 3/206 (1%)
 Frame = +1

Query: 94  FDVTNEASSTAGGQRFDREYGAAYAKQVLSDASSFTWGIFNQP-DPSDRRPADGDTVTLA 270
           FD TN ASSTAGGQRFDRE G  YAKQVL+DASSF W  F QP D  DR+P D   VTL 
Sbjct: 23  FDATNTASSTAGGQRFDREVGVDYAKQVLADASSFIWDAFEQPGDGGDRKPVDA--VTLT 80

Query: 271 VRDTNGIASTSGSTIELSARSVGGITGDN--LKEQVDGVLYHEVVHVWQWGLQDYHEHHG 444
           V D +G+A TSG  I LSAR VGG +  +  ++ +V GVLYHE  HVWQWGLQDY  H  
Sbjct: 81  VEDIDGVAFTSGDGIHLSARYVGGYSSSSGDVRTEVTGVLYHEATHVWQWGLQDYAAHSW 140

Query: 445 IFEGIADYVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNGKLKD 624
           ++EGIAD+VRL+AGYVAA WV+ G G+ W++ Y VTARF DYCDS KPGFVA++N KLKD
Sbjct: 141 VYEGIADFVRLRAGYVAAGWVQPGQGNSWEDSYSVTARFFDYCDSVKPGFVADINAKLKD 200

Query: 625 GYNDDYFVQILGTSADQLWNDYKAKY 702
           GYN DYFVQI G +  QLW DYKAKY
Sbjct: 201 GYNVDYFVQITGKTVQQLWQDYKAKY 226

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>Os10g0490900:Os10g0490900 |
          Length = 255

 Score =  224 bits (572), Expect(2) = 3e-61
 Identities = 114/191 (59%), Positives = 138/191 (72%), Gaps = 4/191 (2%)
 Frame = +1

Query: 142 DREYGAAYAKQVLSDASSFTWGIFNQP-DPSDRRPADGDTVTLAVRDTNGIASTSGSTIE 318
           DRE G  YAKQ+L+DASSF W  F QP D  DR+P D   VTL V D +G+A TSG  I 
Sbjct: 66  DREVGVDYAKQMLADASSFIWDTFEQPGDGGDRKPVDA--VTLTVEDIDGVAFTSGDGIH 123

Query: 319 LSARSVGGITG-DNLKEQVDGVLYHEVVHVWQWGLQDYHEHHGIFEGIADYVRLKAGYVA 495
           LSAR VGG +   +++ +V GVLYHE  HVWQW  +   +  G+ EGIAD+VRL+AGY  
Sbjct: 124 LSARYVGGYSAAGDVRAEVTGVLYHEATHVWQWDGRGGADG-GLIEGIADFVRLRAGYAP 182

Query: 496 ANWVKEGGGSRWDEGYDVTARFLDYCDSRK--PGFVAEMNGKLKDGYNDDYFVQILGTSA 669
            +WV+ G G RWD+GYDVTARFLDYCDS     GFVA++NGK+KDGY+DD+FVQI G + 
Sbjct: 183 PHWVQPGQGDRWDQGYDVTARFLDYCDSPAVVQGFVAQLNGKMKDGYSDDFFVQISGKTI 242

Query: 670 DQLWNDYKAKY 702
           DQLW DYKAKY
Sbjct: 243 DQLWQDYKAKY 253



 Score = 29.3 bits (64), Expect(2) = 3e-61
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +3

Query: 93  VRRDERGVEHSRRPAIRQGV 152
           VRRDE GVEH RR A+ + V
Sbjct: 50  VRRDEHGVEHRRRAAVDREV 69

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>Os05g0582000:Os05g0582000 |
          Length = 297

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 29/115 (25%), Positives = 51/115 (44%)
 Frame = +1

Query: 352 DNLKEQVDGVLYHEVVHVWQWGLQDYHEHHGIFEGIADYVRLKAGYVAANWVKEGGGSRW 531
           D   + V   +   V  +W W  +       + E + DY+   A  V A+   +      
Sbjct: 156 DKAADAVANAVRRAVARMWLWDGRGAAPAR-VTEAMVDYLSSGADAVEASPANDDDDD-- 212

Query: 532 DEGYDVTARFLDYCDSRKPGFVAEMNGKLKDGYNDDYFVQILGTSADQLWNDYKA 696
           D  + ++ARFL + + R+ GFVA +N  ++D ++D      LG  A  +   Y+A
Sbjct: 213 DAPHCMSARFLGHLERRRGGFVARLNRAMRDRWSDAAMDAALGVPARPVCAAYRA 267

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>AK100169:Os06g0486000 |
          Length = 748

 Score = 32.0 bits (71), Expect = 0.56
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 122 QPAASDSTGSTAPPTPSKCSRMLPPSPGASSTSRTP 229
           Q     S GST  P PS  S   PPS G+S++S  P
Sbjct: 149 QQQQHQSGGSTPSPPPSPSSNQPPPSSGSSASSSEP 184

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>Os07g0195900:Os07g0195900 |
          Length = 1219

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
 Frame = +2

Query: 128 AASDSTGSTAPPTPSKCSRMLPPSP------GASSTSRTP 229
           A+S  T    PP PS+   +LPP P      GASS+S  P
Sbjct: 74  ASSSPTPPPTPPLPSQPPPLLPPPPKPPTKDGASSSSSAP 113

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>Os05g0464200:Os05g0464200 |
          Length = 461

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
 Frame = +3

Query: 462 GLRAAQGRVRSGELGEGGRRQPVGRGIR---------RDGQVPGLLRLAQARVRGG 602
           G R+  GR  +GE G G  RQ  G G R         RDG+V G     QAR  GG
Sbjct: 154 GGRSGDGRA-AGERGGGSARQASGGGRRQASAGGGQSRDGRVAGERGSRQARPNGG 208

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>AK069352:Os02g0522800 |
          Length = 130

 Score = 27.3 bits (59), Expect(2) = 2.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 128 AASDSTGSTAPPTPSKCSRMLPPSPGASSTSRTPQ 232
           AA+ ST +++    ++   + PP P +S+  RTPQ
Sbjct: 23  AAASSTDASSAAAAAQGGAVAPPPPPSSADRRTPQ 57



 Score = 21.2 bits (43), Expect(2) = 2.6
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +1

Query: 220 PDPSDRRPADGDTVTLAVRDTNGIASTSGSTIELSAR 330
           P P D    DG +   A  D  G    S S     AR
Sbjct: 56  PQPGDGGRTDGSSSAAAAADRKGKKPMSASDDRKQAR 92

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>Os06g0660800:Os06g0660800 |
          Length = 724

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +2

Query: 122 QPAASDSTGSTAPPTPSKCSRMLPPSPGASSTSRTP 229
           +PA S S   T PPTPS  +  L PSP   S+S  P
Sbjct: 224 RPAPSPSP--TGPPTPSPTNPNLEPSPPPPSSSAPP 257

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>Os04g0280200:Os04g0280200 |
          Length = 951

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 122 QPAASDSTGSTAPPTPSKCSRMLPPSPGASSTSRTP 229
           +PAA+ S+ +T PP P       PP P   S+S +P
Sbjct: 87  EPAAATSSSTTPPPLPPPPPPPPPPPPPPPSSSPSP 122

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>AK107357: |
          Length = 734

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 128 AASDSTGSTAPPTPSKCSRM-LPPSPGASSTSR 223
           A S   GS +PPT S  S   +PP  GASS+S+
Sbjct: 119 ATSPQMGSMSPPTSSAASTTGVPPPSGASSSSK 151

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>AY344492:Os05g0530400 |
          Length = 459

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 764 VHRRRPVHMHAMQHETDQP 708
           +HRR+PVH H++Q++ + P
Sbjct: 107 IHRRKPVHSHSLQNQINGP 125

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>AK100412:Os05g0530400 |
          Length = 459

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 764 VHRRRPVHMHAMQHETDQP 708
           +HRR+PVH H++Q++ + P
Sbjct: 107 IHRRKPVHSHSLQNQINGP 125

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>AB050098:Os05g0530400 |
          Length = 459

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 764 VHRRRPVHMHAMQHETDQP 708
           +HRR+PVH H++Q++ + P
Sbjct: 107 IHRRKPVHSHSLQNQINGP 125

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>AB050096:Os05g0530400 |
          Length = 459

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 764 VHRRRPVHMHAMQHETDQP 708
           +HRR+PVH H++Q++ + P
Sbjct: 107 IHRRKPVHSHSLQNQINGP 125

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>AK067846:Os05g0300700 |
          Length = 615

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 23/84 (27%), Positives = 34/84 (40%)
 Frame = -2

Query: 407 HTCTTSWYSTPSTCSLRLSPVIPPTERALSSMVLPLVEAMPFVSRTARVTVSPSAGLRSE 228
           HT    ++  P    L LSP + P+  +  S  L +    P     A V V+   G    
Sbjct: 37  HTNPLGFFRVPGFSFLLLSPPLDPSSSSPRSSALAVARRRPPTMEAAGVEVNGGGG---- 92

Query: 227 GSGWLKMPQVKEEASESTCLA*AA 156
           G   + +PQ  E A++    A AA
Sbjct: 93  GDVVVVVPQQHEVAAKQAAAAAAA 116

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>Os03g0861400:Os03g0861400 |
          Length = 397

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = -1

Query: 153 VLPVESLAAGCARRLVRHVERDRASRGCQGQEEDSG 46
           +L VE    GCARR+ R + R   S+G QG E D G
Sbjct: 58  ILGVELHCTGCARRMRRCILR---SKGVQGVEVDMG 90

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>Os05g0573900:Os05g0573900 |
          Length = 694

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 119 AQPAAS-DSTGSTAPPTPSKCSRMLPPSPGASSTSRT 226
           A P+ S  S+GS  PP P       PP P A  TSRT
Sbjct: 325 ASPSPSTSSSGSAGPPAPPP-----PPPPAAKRTSRT 356

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>AK066544:Os07g0102100 |
          Length = 808

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 38/129 (29%), Positives = 50/129 (38%), Gaps = 25/129 (19%)
 Frame = -2

Query: 554 AVTSYPSSHRLPPPSF------TQFAATYPALSRT*SAIPSKIPWCSW*SCSPHCHTCTT 393
           A ++ P S   PPPS       T  +A+ P+ S   S+ PS        S SP   T T 
Sbjct: 25  ATSAPPHSTSTPPPSTAASATPTTSSASSPSSSTASSSSPSSST-----STSPSAPTTTE 79

Query: 392 SWYSTPSTCSLRLSP------------------VIPPTERAL-SSMVLPLVEAMPFVSRT 270
           +   +PST S   +P                    PP   A  SS   P   + P  SRT
Sbjct: 80  TAALSPSTPSSPATPRSASSPTSRPRTSSTSTSASPPRSAAPPSSASPPPPRSAPSGSRT 139

Query: 269 ARVTVSPSA 243
           +  T +PSA
Sbjct: 140 SSRTAAPSA 148

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>AK067937:Os02g0786200 |
          Length = 688

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 133 QRFDREYGAAYAKQVLSDASSFTW--GIFNQPDPSDRRPADGDTVTLAVRDTNGIA 294
           ++F R      +   ++D S+ T   G+  + DP  R+P + +TVT  V +    A
Sbjct: 444 EKFTRNANETTSLHAMNDPSALTHHIGVVPEVDPKQRKPVEYETVTSKVHEGGATA 499

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>AK065232:Os03g0275500 |
          Length = 651

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 213 EDAPGEGGSIREHLLGVGGAVLPVESLAAGCARRLVR 103
           +D P E   IRE L    G+   V +  AGC+RRL R
Sbjct: 43  DDEPAEERHIREILHLTSGSRAHVAAAVAGCSRRLSR 79

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>AK111225: |
          Length = 818

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 155 APPTPSKCSRMLPPSPGASSTSRTP 229
           APP P++ S    PSP +SS++ TP
Sbjct: 774 APPKPAEASPSSSPSPSSSSSTVTP 798

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>AK105185:Os12g0176300 |
          Length = 90

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 437 CSW*SCSPHCHTCTTSWYSTPSTCSLRLSPVIPPTERALSSMVL 306
           CSW   +P   +C+ S  S+P++ S   SP  PP   AL S+ L
Sbjct: 17  CSWRWTTP---SCSPSPGSSPTSSSPTSSPPSPPPRSALFSLFL 57

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>AK102985:Os03g0271800 |
          Length = 142

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 140 STGSTAPPTPSKCSRMLPPSPGASSTSRTP 229
           ++G+T PP P + +  L P  GAS  +R P
Sbjct: 63  TSGTTPPPRPPRRAARLAPCTGASPRTRPP 92

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>Os05g0206600:Os05g0206600 |
          Length = 508

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 156 AVLPVESLAAGCARRLVRHVERDRASRG--CQGQEEDSGCCDGYLH 25
           A LP +    G ARRLVR + R R++ G    G E D    D  ++
Sbjct: 7   AELPQQKAGGGLARRLVRLLRRKRSTSGSVAGGGEYDESSMDSSIN 52


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 18,536,620
Number of extensions: 418504
Number of successful extensions: 2634
Number of sequences better than 10.0: 26
Number of HSP's gapped: 2606
Number of HSP's successfully gapped: 28
Length of query: 286
Length of database: 15,399,855
Length adjustment: 100
Effective length of query: 186
Effective length of database: 11,395,755
Effective search space: 2119610430
Effective search space used: 2119610430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result