>P12752:Y24K_STRGR Hypothetical 24.7 kDa protein in photolyase 5'region - Streptomyces|
           griseus
          Length = 238
 Score = 33.5 bits (75), Expect = 1.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 131 ASDSTGSTAPPTPSKCSRMLPPSPGASSTSRTPQ 232
           +S +T  TA P P +C    PP PG++S S  P+
Sbjct: 13  SSSATWRTARPAPRRCGSCRPPPPGSASPSPRPR 46

>P34663:HM23_CAEEL Homeobox protein ceh-23 - Caenorhabditis elegans|
          Length = 305

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
 Frame = -2

Query: 401 CTTSWYSTPSTCSLRLSPVIP-----------PTERALSSMVLPLVEAMPFVSRTARVTV 255
           C TS    PST +  LSP +P           P  +  +S++LP + A PF+   + +  
Sbjct: 36  CPTS--CIPSTSTGMLSPNLPFSATIPRVNLFPPSQPANSLILPTIPAQPFIPNPSLLQA 93

Query: 254 SPSA 243
           +PSA
Sbjct: 94  NPSA 97

>Q4FMW8:GUAA_PELUB GMP synthase [glutamine-hydrolyzing] - Pelagibacter ubique|
          Length = 521

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +1

Query: 145 REYGAAYAKQVLSDASSFTWGIFNQPDPSDRRPADGDTVTLAVRDTNGIASTSGSTIELS 324
           RE+G A   +V +  S+ T   FN+ + SD   +  D V+   ++   IAST  S + + 
Sbjct: 107 REFGLATINKVSN--STLTKNFFNKNNRSDVWMSHADQVSKMPKNFKIIASTKNSKLTII 164

Query: 325 ARSVGGITGDNLKEQVDGVLYH-EVVH 402
                    +N+KE   GV +H EV H
Sbjct: 165 ---------ENIKENFYGVQFHPEVTH 182

>Q4P6D5:SWC5_USTMA SWR1-complex protein 5 - Ustilago maydis (Smut fungus)|
          Length = 376

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 119 AQPAASDSTGSTAPPTPSKCSRMLPPSPGASSTSRTP 229
           +Q A+  ST S+AP   +  S  LP SP ++STS +P
Sbjct: 246 SQIASPTSTTSSAPAPSASASAPLPTSPASTSTSSSP 282

>P24289:NUP1_PENCI Nuclease P1 - Penicillium citrinum|
          Length = 270

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 16/102 (15%)
 Frame = +1

Query: 268 AVRDTNGIASTSGSTIE---LSARSVGGITGDNLKEQV----------DGVLYHEVVHVW 408
           A+ D    A T    IE    +A+++G I GDN+ E +          + ++   V+   
Sbjct: 165 ALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHG 224

Query: 409 QWGLQDYHEHHGIFEGIADYVRL---KAGYVAANWVKEGGGS 525
              LQ    +   ++ + D + L   K GY  ANW+ E  GS
Sbjct: 225 AAALQTGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHGS 266

>Q6NHT0:ATPG_CORDI ATP synthase gamma chain - Corynebacterium diphtheriae|
          Length = 325

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = +1

Query: 466 YVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNG--KLKDGYNDD 639
           Y + +   VA  W        W+E +DV    +D       GF A  NG  + +DG N D
Sbjct: 125 YYKFRGQEVAGAWTGFSQDPSWEETHDVRRHLID-------GFNASSNGTARYRDGLNTD 177

Query: 640 YFVQILG 660
              +I G
Sbjct: 178 EGQEIQG 184

>Q9HCI5:MAGE1_HUMAN Melanoma-associated antigen E1 - Homo sapiens (Human)|
          Length = 957

 Score = 30.4 bits (67), Expect = 9.4
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 125 PAASDSTGSTAPPTPSKC-SRMLPPSPGASSTSRTP 229
           P +S+   ++ PPT S+  S  LPP+PG  +++  P
Sbjct: 142 PTSSEEPSTSVPPTASEVPSTSLPPTPGEGTSTSVP 177

>P40087:DDI1_YEAST DNA damage-inducible protein 1 - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 428

 Score = 30.4 bits (67), Expect = 9.4
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 134 SDSTGSTAPPTPSKCSRMLPPSPGA 208
           S +T S  P TP+K S  LPP PGA
Sbjct: 336 SVTTSSDKPLTPTKTSSTLPPQPGA 360


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 108,394,560
Number of extensions: 2230198
Number of successful extensions: 8892
Number of sequences better than 10.0: 8
Number of HSP's gapped: 8862
Number of HSP's successfully gapped: 8
Length of query: 286
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 174
Effective length of database: 69,965,399
Effective search space: 12173979426
Effective search space used: 12173979426
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)