ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf28f05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Y14201.1|HVY14201 Hordeum vulgare mRNA for hypothetical protein, clone pBH6-12 Length = 829 Score = 1633 bits (824), Expect = 0.0 Identities = 827/828 (99%) Strand = Plus / Plus Query: 20 acgagatgaagatatccatcgcagcagccgctgtcctcctcctggccctggcagccacgg 79 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1 acgagatgaagatatccatcgcagcagccgctgtcctcctcctggccttggcagccacgg 60 Query: 80 ctagcgcggtcacgttcgacgtgacgaacgaggcgtcgagcacagccggcggccagcgat 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ctagcgcggtcacgttcgacgtgacgaacgaggcgtcgagcacagccggcggccagcgat 120 Query: 140 tcgacagggagtacggcgccgcctacgccaagcaagtgctctcggatgcttcctccttca 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tcgacagggagtacggcgccgcctacgccaagcaagtgctctcggatgcttcctccttca 180 Query: 200 cctggggcatcttcaaccagccggacccctcagaccgcaggcccgccgatggcgacaccg 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 cctggggcatcttcaaccagccggacccctcagaccgcaggcccgccgatggcgacaccg 240 Query: 260 tcaccctcgccgtccgcgacacgaacggcatcgcctccaccagcggcagcaccatcgagc 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tcaccctcgccgtccgcgacacgaacggcatcgcctccaccagcggcagcaccatcgagc 300 Query: 320 tcagcgcccgctccgtcggcggtattaccggcgacaacctcaaggagcaggtggacgggg 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcagcgcccgctccgtcggcggtattaccggcgacaacctcaaggagcaggtggacgggg 360 Query: 380 tgctgtaccacgaggtggtgcacgtgtggcagtgggggctgcaggactaccacgagcacc 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 tgctgtaccacgaggtggtgcacgtgtggcagtgggggctgcaggactaccacgagcacc 420 Query: 440 acgggatcttcgaggggatcgcggactacgtgcggctcaaggccgggtacgtagcggcga 499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 acgggatcttcgaggggatcgcggactacgtgcggctcaaggccgggtacgtagcggcga 480 Query: 500 actgggtgaaggagggcggcggcagccggtgggacgagggatacgacgtgacggccaggt 559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 actgggtgaaggagggcggcggcagccggtgggacgagggatacgacgtgacggccaggt 540 Query: 560 tcctggactactgcgactcgcgcaagcccgggttcgtggcggagatgaacggcaagctca 619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 tcctggactactgcgactcgcgcaagcccgggttcgtggcggagatgaacggcaagctca 600 Query: 620 aggacggctacaacgacgactacttcgtgcagatcctcgggacgagcgcggaccagctgt 679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 aggacggctacaacgacgactacttcgtgcagatcctcgggacgagcgcggaccagctgt 660 Query: 680 ggaacgactacaaggccaagtactcccagggctgatccgtttcatgttgcatcgcatgca 739 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 ggaacgactacaaggccaagtactcccagggctgatccgtttcatgttgcatcgcatgca 720 Query: 740 tgtgtaccggtctacgtctatgtactgatatactagtagtatacttgtattactacacgg 799 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 tgtgtaccggtctacgtctatgtactgatatactagtagtatacttgtattactacacgg 780 Query: 800 ttgatgtactgcctggaatggaataaatcaacgttcgcaaggttgagc 847 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 ttgatgtactgcctggaatggaataaatcaacgttcgcaaggttgagc 828
>gb|U32431.1|TAU32431 Triticum aestivum mRNA, clone WCI-5, complete cds Length = 862 Score = 262 bits (132), Expect = 2e-66 Identities = 168/180 (93%) Strand = Plus / Plus Query: 529 tgggacgagggatacgacgtgacggccaggttcctggactactgcgactcgcgcaagccc 588 ||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||| || Sbjct: 520 tgggacgaggggtacgacgtgacggccaagttcctggactactgcgactccctcaaggcc 579 Query: 589 gggttcgtggcggagatgaacggcaagctcaaggacggctacaacgacgactacttcgtg 648 ||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||| Sbjct: 580 gggttcgtggcggagatgaacagcaagctcaaggacggatacagcgacgactacttcgtg 639 Query: 649 cagatcctcgggacgagcgcggaccagctgtggaacgactacaaggccaagtactcccag 708 |||||||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct: 640 cagatcctggggaagagcgtggaccagctgtggaacgactacaaggccaagtacccccag 699 Score = 63.9 bits (32), Expect = 9e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 449 tcgaggggatcgcggactacgtgcggctcaaggccg 484 ||||||||||||| |||||||||||||||||||||| Sbjct: 440 tcgaggggatcgccgactacgtgcggctcaaggccg 475 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Plus Query: 781 tacttgtattactacacggttgatgtactgcctggaatggaataaatcaacgtt 834 ||||||||||||| || || ||||||||||||||||||||||||||| |||| Sbjct: 778 tacttgtattactgtacaatttatgtactgcctggaatggaataaatcagcgtt 831 Score = 48.1 bits (24), Expect = 0.052 Identities = 51/60 (85%) Strand = Plus / Plus Query: 162 ctacgccaagcaagtgctctcggatgcttcctccttcacctggggcatcttcaaccagcc 221 |||||||||||| |||||||| || || || ||||||| |||| || |||||||||||| Sbjct: 159 ctacgccaagcaggtgctctccgaggcctcgtccttcatctggaccaccttcaaccagcc 218 Score = 48.1 bits (24), Expect = 0.052 Identities = 33/36 (91%) Strand = Plus / Plus Query: 379 gtgctgtaccacgaggtggtgcacgtgtggcagtgg 414 |||||||||||||||| | |||||||||||||||| Sbjct: 373 gtgctgtaccacgaggcgacgcacgtgtggcagtgg 408
>ref|NM_001071461.1| Oryza sativa (japonica cultivar-group) Os10g0491000 (Os10g0491000) mRNA, complete cds Length = 856 Score = 208 bits (105), Expect = 2e-50 Identities = 266/320 (83%), Gaps = 6/320 (1%) Strand = Plus / Plus Query: 106 aacgaggcgtcgagcacagccggcggccagcgattcgacagggagtacggcgccgcctac 165 ||||||||| ||||||| |||||||||||||| |||||| ||||||||||||||| ||| Sbjct: 111 aacgaggcggcgagcaccgccggcggccagcggttcgaccgggagtacggcgccgggtac 170 Query: 166 gccaagcaagtgctctcggatgcttcctccttcacctggggcatcttcaaccagccggac 225 |||||||| |||||| | | || ||||||||||||||| ||||||||| ||||||| | Sbjct: 171 gccaagcaggtgctcgccgccgcctcctccttcacctggagcatcttcagccagccgagc 230 Query: 226 ccctcagaccgcaggcccgccgatggcgacaccgtcaccctcgccgtccgcgacacgaac 285 || | ||||| ||||||| ||| | ||||| |||||||||||||||| || Sbjct: 231 gccgccgaccggaggcccgtcgacg------ccgtcgtcctcgccgtccgcgacgtcgac 284 Query: 286 ggcatcgcctccaccagcggcagcaccatcgagctcagcgcccgctccgtcggcggtatt 345 |||||||||||||||||||||| ||||||| |||| ||||| ||| ||||| ||| | Sbjct: 285 ggcatcgcctccaccagcggcaacaccatcacgctcggcgccggctacgtcgccggcgtc 344 Query: 346 accggcgacaacctcaaggagcaggtggacggggtgctgtaccacgaggtggtgcacgtg 405 |||||| || || ||||| ||||||| ||| ||| ||||||| ||||||||||||||| Sbjct: 345 accggcaacgacttcaagacgcaggtgaccggagtgttgtaccatgaggtggtgcacgtg 404 Query: 406 tggcagtgggggctgcagga 425 |||||||||||||||||||| Sbjct: 405 tggcagtgggggctgcagga 424 Score = 73.8 bits (37), Expect = 9e-10 Identities = 129/157 (82%), Gaps = 2/157 (1%) Strand = Plus / Plus Query: 546 cgtgacggccaggttcctggactactgcgactcgcg-caagcccgggttcgtggcggaga 604 ||||||||| |||||| | |||||||||||| ||| |||||| |||||||| || || Sbjct: 545 cgtgacggcgaggttcttcgactactgcgaca-gcgtcaagccagggttcgttgccgacc 603 Query: 605 tgaacggcaagctcaaggacggctacaacgacgactacttcgtgcagatcctcgggacga 664 |||||| ||||| ||| | || ||||||| ||||||||||||||||||| ||||| || Sbjct: 604 tgaacgctaagctgaagaatgggtacaacgtcgactacttcgtgcagatcaccgggaaga 663 Query: 665 gcgcggaccagctgtggaacgactacaaggccaagta 701 || | | ||||||||| | || |||||||||||||| Sbjct: 664 ccgtgcagcagctgtggcaggattacaaggccaagta 700
>dbj|AK100816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122C23, full insert sequence Length = 856 Score = 208 bits (105), Expect = 2e-50 Identities = 266/320 (83%), Gaps = 6/320 (1%) Strand = Plus / Plus Query: 106 aacgaggcgtcgagcacagccggcggccagcgattcgacagggagtacggcgccgcctac 165 ||||||||| ||||||| |||||||||||||| |||||| ||||||||||||||| ||| Sbjct: 111 aacgaggcggcgagcaccgccggcggccagcggttcgaccgggagtacggcgccgggtac 170 Query: 166 gccaagcaagtgctctcggatgcttcctccttcacctggggcatcttcaaccagccggac 225 |||||||| |||||| | | || ||||||||||||||| ||||||||| ||||||| | Sbjct: 171 gccaagcaggtgctcgccgccgcctcctccttcacctggagcatcttcagccagccgagc 230 Query: 226 ccctcagaccgcaggcccgccgatggcgacaccgtcaccctcgccgtccgcgacacgaac 285 || | ||||| ||||||| ||| | ||||| |||||||||||||||| || Sbjct: 231 gccgccgaccggaggcccgtcgacg------ccgtcgtcctcgccgtccgcgacgtcgac 284 Query: 286 ggcatcgcctccaccagcggcagcaccatcgagctcagcgcccgctccgtcggcggtatt 345 |||||||||||||||||||||| ||||||| |||| ||||| ||| ||||| ||| | Sbjct: 285 ggcatcgcctccaccagcggcaacaccatcacgctcggcgccggctacgtcgccggcgtc 344 Query: 346 accggcgacaacctcaaggagcaggtggacggggtgctgtaccacgaggtggtgcacgtg 405 |||||| || || ||||| ||||||| ||| ||| ||||||| ||||||||||||||| Sbjct: 345 accggcaacgacttcaagacgcaggtgaccggagtgttgtaccatgaggtggtgcacgtg 404 Query: 406 tggcagtgggggctgcagga 425 |||||||||||||||||||| Sbjct: 405 tggcagtgggggctgcagga 424 Score = 73.8 bits (37), Expect = 9e-10 Identities = 129/157 (82%), Gaps = 2/157 (1%) Strand = Plus / Plus Query: 546 cgtgacggccaggttcctggactactgcgactcgcg-caagcccgggttcgtggcggaga 604 ||||||||| |||||| | |||||||||||| ||| |||||| |||||||| || || Sbjct: 545 cgtgacggcgaggttcttcgactactgcgaca-gcgtcaagccagggttcgttgccgacc 603 Query: 605 tgaacggcaagctcaaggacggctacaacgacgactacttcgtgcagatcctcgggacga 664 |||||| ||||| ||| | || ||||||| ||||||||||||||||||| ||||| || Sbjct: 604 tgaacgctaagctgaagaatgggtacaacgtcgactacttcgtgcagatcaccgggaaga 663 Query: 665 gcgcggaccagctgtggaacgactacaaggccaagta 701 || | | ||||||||| | || |||||||||||||| Sbjct: 664 ccgtgcagcagctgtggcaggattacaaggccaagta 700
>dbj|AK059607.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F02, full insert sequence Length = 852 Score = 208 bits (105), Expect = 2e-50 Identities = 266/320 (83%), Gaps = 6/320 (1%) Strand = Plus / Plus Query: 106 aacgaggcgtcgagcacagccggcggccagcgattcgacagggagtacggcgccgcctac 165 ||||||||| ||||||| |||||||||||||| |||||| ||||||||||||||| ||| Sbjct: 107 aacgaggcggcgagcaccgccggcggccagcggttcgaccgggagtacggcgccgggtac 166 Query: 166 gccaagcaagtgctctcggatgcttcctccttcacctggggcatcttcaaccagccggac 225 |||||||| |||||| | | || ||||||||||||||| ||||||||| ||||||| | Sbjct: 167 gccaagcaggtgctcgccgccgcctcctccttcacctggagcatcttcagccagccgagc 226 Query: 226 ccctcagaccgcaggcccgccgatggcgacaccgtcaccctcgccgtccgcgacacgaac 285 || | ||||| ||||||| ||| | ||||| |||||||||||||||| || Sbjct: 227 gccgccgaccggaggcccgtcgacg------ccgtcgtcctcgccgtccgcgacgtcgac 280 Query: 286 ggcatcgcctccaccagcggcagcaccatcgagctcagcgcccgctccgtcggcggtatt 345 |||||||||||||||||||||| ||||||| |||| ||||| ||| ||||| ||| | Sbjct: 281 ggcatcgcctccaccagcggcaacaccatcacgctcggcgccggctacgtcgccggcgtc 340 Query: 346 accggcgacaacctcaaggagcaggtggacggggtgctgtaccacgaggtggtgcacgtg 405 |||||| || || ||||| ||||||| ||| ||| ||||||| ||||||||||||||| Sbjct: 341 accggcaacgacttcaagacgcaggtgaccggagtgttgtaccatgaggtggtgcacgtg 400 Query: 406 tggcagtgggggctgcagga 425 |||||||||||||||||||| Sbjct: 401 tggcagtgggggctgcagga 420 Score = 73.8 bits (37), Expect = 9e-10 Identities = 129/157 (82%), Gaps = 2/157 (1%) Strand = Plus / Plus Query: 546 cgtgacggccaggttcctggactactgcgactcgcg-caagcccgggttcgtggcggaga 604 ||||||||| |||||| | |||||||||||| ||| |||||| |||||||| || || Sbjct: 541 cgtgacggcgaggttcttcgactactgcgaca-gcgtcaagccagggttcgttgccgacc 599 Query: 605 tgaacggcaagctcaaggacggctacaacgacgactacttcgtgcagatcctcgggacga 664 |||||| ||||| ||| | || ||||||| ||||||||||||||||||| ||||| || Sbjct: 600 tgaacgctaagctgaagaatgggtacaacgtcgactacttcgtgcagatcaccgggaaga 659 Query: 665 gcgcggaccagctgtggaacgactacaaggccaagta 701 || | | ||||||||| | || |||||||||||||| Sbjct: 660 ccgtgcagcagctgtggcaggattacaaggccaagta 696
>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete sequence Length = 131984 Score = 145 bits (73), Expect = 3e-31 Identities = 192/232 (82%), Gaps = 6/232 (2%) Strand = Plus / Minus Query: 106 aacgaggcgtcgagcacagccggcggccagcgattcgacagggagtacggcgccgcctac 165 ||||||||| ||||||| |||||||||||||| |||||| ||||||||||||||| ||| Sbjct: 87802 aacgaggcggcgagcaccgccggcggccagcggttcgaccgggagtacggcgccgggtac 87743 Query: 166 gccaagcaagtgctctcggatgcttcctccttcacctggggcatcttcaaccagccggac 225 |||||||| |||||| | | || ||||||||||||||| ||||||||| ||||||| | Sbjct: 87742 gccaagcaggtgctcgccgccgcctcctccttcacctggagcatcttcagccagccgagc 87683 Query: 226 ccctcagaccgcaggcccgccgatggcgacaccgtcaccctcgccgtccgcgacacgaac 285 || | ||||| |||||| | |||| ||||| |||||||||||||||| || Sbjct: 87682 gccgccgaccggaggccc------gtcgacgccgtcgtcctcgccgtccgcgacgtcgac 87629 Query: 286 ggcatcgcctccaccagcggcagcaccatcgagctcagcgcccgctccgtcg 337 |||||||||||||||||||||| ||||||| |||| ||||| ||| ||||| Sbjct: 87628 ggcatcgcctccaccagcggcaacaccatcacgctcggcgccggctacgtcg 87577 Score = 79.8 bits (40), Expect = 1e-11 Identities = 52/56 (92%) Strand = Plus / Plus Query: 525 ccggtgggacgagggatacgacgtgacggccaggttcctggactactgcgactcgc 580 |||||||||| |||| |||||||||||||| |||||||| |||||||||||||||| Sbjct: 90327 ccggtgggaccaggggtacgacgtgacggcgaggttcctcgactactgcgactcgc 90382 Score = 77.8 bits (39), Expect = 6e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 383 tgtaccacgaggtggtgcacgtgtggcagtgggggctgcagga 425 ||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 86901 tgtaccatgaggtggtgcacgtgtggcagtgggggctgcagga 86859 Score = 77.8 bits (39), Expect = 6e-11 Identities = 48/51 (94%) Strand = Plus / Plus Query: 379 gtgctgtaccacgaggtggtgcacgtgtggcagtgggggctgcaggactac 429 |||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 92540 gtgctgtaccacgaggcgacgcacgtgtggcagtgggggctgcaggactac 92590 Score = 75.8 bits (38), Expect = 2e-10 Identities = 130/158 (82%), Gaps = 2/158 (1%) Strand = Plus / Plus Query: 546 cgtgacggccaggttcctggactactgcgactcgcg-caagcccgggttcgtggcggaga 604 ||||||||| |||||| | |||||||||||| ||| |||||| |||||||| || || | Sbjct: 92707 cgtgacggcgaggttcttcgactactgcgaca-gcgtcaagccagggttcgtcgccgaca 92765 Query: 605 tgaacggcaagctcaaggacggctacaacgacgactacttcgtgcagatcctcgggacga 664 | || | |||| | |||||||| ||||| | ||||||||||||||||||| ||||| || Sbjct: 92766 tcaatgccaagttgaaggacgggtacaatgtcgactacttcgtgcagatcaccgggaaga 92825 Query: 665 gcgcggaccagctgtggaacgactacaaggccaagtac 702 || | | ||||||||| | || ||||||||||||||| Sbjct: 92826 ccgtgcagcagctgtggcaggattacaaggccaagtac 92863 Score = 73.8 bits (37), Expect = 9e-10 Identities = 129/157 (82%), Gaps = 2/157 (1%) Strand = Plus / Minus Query: 546 cgtgacggccaggttcctggactactgcgactcgcg-caagcccgggttcgtggcggaga 604 ||||||||| |||||| | |||||||||||| ||| |||||| |||||||| || || Sbjct: 86738 cgtgacggcgaggttcttcgactactgcgaca-gcgtcaagccagggttcgttgccgacc 86680 Query: 605 tgaacggcaagctcaaggacggctacaacgacgactacttcgtgcagatcctcgggacga 664 |||||| ||||| ||| | || ||||||| ||||||||||||||||||| ||||| || Sbjct: 86679 tgaacgctaagctgaagaatgggtacaacgtcgactacttcgtgcagatcaccgggaaga 86620 Query: 665 gcgcggaccagctgtggaacgactacaaggccaagta 701 || | | ||||||||| | || |||||||||||||| Sbjct: 86619 ccgtgcagcagctgtggcaggattacaaggccaagta 86583 Score = 61.9 bits (31), Expect = 3e-06 Identities = 94/115 (81%) Strand = Plus / Plus Query: 91 acgttcgacgtgacgaacgaggcgtcgagcacagccggcggccagcgattcgacagggag 150 |||||||| | ||||||| |||||||||||| |||||||| ||||| |||||| ||||| Sbjct: 92249 acgttcgatgcgacgaacacggcgtcgagcaccgccggcgggcagcggttcgaccgggag 92308 Query: 151 tacggcgccgcctacgccaagcaagtgctctcggatgcttcctccttcacctggg 205 ||||| | |||||| ||||| |||||| | || || || ||||||| ||||| Sbjct: 92309 gtcggcgtggactacgcgaagcaggtgctcgccgacgcgtcgtccttcatctggg 92363 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 589 gggttcgtggcggagatgaacggcaagctcaaggacggctacaacgacgactacttcgtg 648 |||||||||||| || | ||||||||| | |||||||| |||| |||||||| |||||| Sbjct: 90397 gggttcgtggcgcagctcaacggcaagatgaaggacggatacagcgacgacttcttcgtc 90456 Query: 649 cagatc 654 |||||| Sbjct: 90457 cagatc 90462 Score = 50.1 bits (25), Expect = 0.013 Identities = 34/37 (91%) Strand = Plus / Plus Query: 379 gtgctgtaccacgaggtggtgcacgtgtggcagtggg 415 |||||||||||||||| | ||||||||||||||||| Sbjct: 90184 gtgctgtaccacgaggcgacgcacgtgtggcagtggg 90220
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 145 bits (73), Expect = 3e-31 Identities = 192/232 (82%), Gaps = 6/232 (2%) Strand = Plus / Plus Query: 106 aacgaggcgtcgagcacagccggcggccagcgattcgacagggagtacggcgccgcctac 165 ||||||||| ||||||| |||||||||||||| |||||| ||||||||||||||| ||| Sbjct: 18125326 aacgaggcggcgagcaccgccggcggccagcggttcgaccgggagtacggcgccgggtac 18125385 Query: 166 gccaagcaagtgctctcggatgcttcctccttcacctggggcatcttcaaccagccggac 225 |||||||| |||||| | | || ||||||||||||||| ||||||||| ||||||| | Sbjct: 18125386 gccaagcaggtgctcgccgccgcctcctccttcacctggagcatcttcagccagccgagc 18125445 Query: 226 ccctcagaccgcaggcccgccgatggcgacaccgtcaccctcgccgtccgcgacacgaac 285 || | ||||| |||||| | |||| ||||| |||||||||||||||| || Sbjct: 18125446 gccgccgaccggaggccc------gtcgacgccgtcgtcctcgccgtccgcgacgtcgac 18125499 Query: 286 ggcatcgcctccaccagcggcagcaccatcgagctcagcgcccgctccgtcg 337 |||||||||||||||||||||| ||||||| |||| ||||| ||| ||||| Sbjct: 18125500 ggcatcgcctccaccagcggcaacaccatcacgctcggcgccggctacgtcg 18125551 Score = 79.8 bits (40), Expect = 1e-11 Identities = 52/56 (92%) Strand = Plus / Minus Query: 525 ccggtgggacgagggatacgacgtgacggccaggttcctggactactgcgactcgc 580 |||||||||| |||| |||||||||||||| |||||||| |||||||||||||||| Sbjct: 18122801 ccggtgggaccaggggtacgacgtgacggcgaggttcctcgactactgcgactcgc 18122746 Score = 77.8 bits (39), Expect = 6e-11 Identities = 48/51 (94%) Strand = Plus / Minus Query: 379 gtgctgtaccacgaggtggtgcacgtgtggcagtgggggctgcaggactac 429 |||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 18120588 gtgctgtaccacgaggcgacgcacgtgtggcagtgggggctgcaggactac 18120538 Score = 77.8 bits (39), Expect = 6e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 383 tgtaccacgaggtggtgcacgtgtggcagtgggggctgcagga 425 ||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 18126227 tgtaccatgaggtggtgcacgtgtggcagtgggggctgcagga 18126269 Score = 75.8 bits (38), Expect = 2e-10 Identities = 130/158 (82%), Gaps = 2/158 (1%) Strand = Plus / Minus Query: 546 cgtgacggccaggttcctggactactgcgactcgcg-caagcccgggttcgtggcggaga 604 ||||||||| |||||| | |||||||||||| ||| |||||| |||||||| || || | Sbjct: 18120421 cgtgacggcgaggttcttcgactactgcgaca-gcgtcaagccagggttcgtcgccgaca 18120363 Query: 605 tgaacggcaagctcaaggacggctacaacgacgactacttcgtgcagatcctcgggacga 664 | || | |||| | |||||||| ||||| | ||||||||||||||||||| ||||| || Sbjct: 18120362 tcaatgccaagttgaaggacgggtacaatgtcgactacttcgtgcagatcaccgggaaga 18120303 Query: 665 gcgcggaccagctgtggaacgactacaaggccaagtac 702 || | | ||||||||| | || ||||||||||||||| Sbjct: 18120302 ccgtgcagcagctgtggcaggattacaaggccaagtac 18120265 Score = 73.8 bits (37), Expect = 9e-10 Identities = 129/157 (82%), Gaps = 2/157 (1%) Strand = Plus / Plus Query: 546 cgtgacggccaggttcctggactactgcgactcgcg-caagcccgggttcgtggcggaga 604 ||||||||| |||||| | |||||||||||| ||| |||||| |||||||| || || Sbjct: 18126390 cgtgacggcgaggttcttcgactactgcgaca-gcgtcaagccagggttcgttgccgacc 18126448 Query: 605 tgaacggcaagctcaaggacggctacaacgacgactacttcgtgcagatcctcgggacga 664 |||||| ||||| ||| | || ||||||| ||||||||||||||||||| ||||| || Sbjct: 18126449 tgaacgctaagctgaagaatgggtacaacgtcgactacttcgtgcagatcaccgggaaga 18126508 Query: 665 gcgcggaccagctgtggaacgactacaaggccaagta 701 || | | ||||||||| | || |||||||||||||| Sbjct: 18126509 ccgtgcagcagctgtggcaggattacaaggccaagta 18126545 Score = 61.9 bits (31), Expect = 3e-06 Identities = 94/115 (81%) Strand = Plus / Minus Query: 91 acgttcgacgtgacgaacgaggcgtcgagcacagccggcggccagcgattcgacagggag 150 |||||||| | ||||||| |||||||||||| |||||||| ||||| |||||| ||||| Sbjct: 18120879 acgttcgatgcgacgaacacggcgtcgagcaccgccggcgggcagcggttcgaccgggag 18120820 Query: 151 tacggcgccgcctacgccaagcaagtgctctcggatgcttcctccttcacctggg 205 ||||| | |||||| ||||| |||||| | || || || ||||||| ||||| Sbjct: 18120819 gtcggcgtggactacgcgaagcaggtgctcgccgacgcgtcgtccttcatctggg 18120765 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Minus Query: 589 gggttcgtggcggagatgaacggcaagctcaaggacggctacaacgacgactacttcgtg 648 |||||||||||| || | ||||||||| | |||||||| |||| |||||||| |||||| Sbjct: 18122731 gggttcgtggcgcagctcaacggcaagatgaaggacggatacagcgacgacttcttcgtc 18122672 Query: 649 cagatc 654 |||||| Sbjct: 18122671 cagatc 18122666 Score = 50.1 bits (25), Expect = 0.013 Identities = 34/37 (91%) Strand = Plus / Minus Query: 379 gtgctgtaccacgaggtggtgcacgtgtggcagtggg 415 |||||||||||||||| | ||||||||||||||||| Sbjct: 18122944 gtgctgtaccacgaggcgacgcacgtgtggcagtggg 18122908
>gb|AF079526.1|AF079526 Triticum aestivum secretory protein (WAS-2) mRNA, complete cds Length = 894 Score = 143 bits (72), Expect = 1e-30 Identities = 207/252 (82%) Strand = Plus / Plus Query: 449 tcgaggggatcgcggactacgtgcggctcaaggccgggtacgtagcggcgaactgggtga 508 ||||||||||||| ||||||||||||||||||||||||| || ||| | ||||||||| Sbjct: 453 tcgaggggatcgccgactacgtgcggctcaaggccgggttcgcgccggggcactgggtga 512 Query: 509 aggagggcggcggcagccggtgggacgagggatacgacgtgacggccaggttcctggact 568 || ||| ||| ||||||||| |||| |||||||| ||||| |||||||| |||| Sbjct: 513 agccggggcagggcgaccggtgggatcaggggtacgacgtcacggcgaggttccttgact 572 Query: 569 actgcgactcgcgcaagcccgggttcgtggcggagatgaacggcaagctcaaggacggct 628 |||||||||||| ||||||||||||||| ||| | | |||| |||| | ||| || | Sbjct: 573 actgcgactcgctcaagcccgggttcgtcgcgcacgtcaacgccaagatgaagagtgggt 632 Query: 629 acaacgacgactacttcgtgcagatcctcgggacgagcgcggaccagctgtggaacgact 688 ||| |||||||| ||||| |||||| ||||||| || || | | ||||||||||| |||| Sbjct: 633 acaccgacgacttcttcgcgcagattctcgggaagaacgtgcagcagctgtggaaggact 692 Query: 689 acaaggccaagt 700 |||| ||||||| Sbjct: 693 acaaagccaagt 704 Score = 48.1 bits (24), Expect = 0.052 Identities = 33/36 (91%) Strand = Plus / Plus Query: 379 gtgctgtaccacgaggtggtgcacgtgtggcagtgg 414 |||||||||||||||| | |||||||||||||||| Sbjct: 386 gtgctgtaccacgaggcgacgcacgtgtggcagtgg 421
>gb|AY108161.1| Zea mays PCO128916 mRNA sequence Length = 648 Score = 123 bits (62), Expect = 1e-24 Identities = 149/178 (83%) Strand = Plus / Plus Query: 525 ccggtgggacgagggatacgacgtgacggccaggttcctggactactgcgactcgcgcaa 584 |||||||||| |||| |||||||| ||||| ||||||||||||||||||||||||| ||| Sbjct: 186 ccggtgggaccaggggtacgacgtcacggcgaggttcctggactactgcgactcgctcaa 245 Query: 585 gcccgggttcgtggcggagatgaacggcaagctcaaggacggctacaacgacgactactt 644 ||| || ||||| ||| | | |||| |||| | ||||||||||||| |||||||| ||| Sbjct: 246 gccgggcttcgtcgcgctgctcaacgccaagatgaaggacggctacaccgacgacttctt 305 Query: 645 cgtgcagatcctcgggacgagcgcggaccagctgtggaacgactacaaggccaagtac 702 || |||||||| || | || || | | ||||||||| | ||||||||||| |||||| Sbjct: 306 cgcccagatcctgggcaagaccgtgcagcagctgtggcaggactacaaggctaagtac 363
>emb|Y14202.1|HVY14202 Hordeum vulgare mRNA for hypothetical protein, clone pBH6-17 Length = 859 Score = 95.6 bits (48), Expect = 2e-16 Identities = 144/176 (81%) Strand = Plus / Plus Query: 525 ccggtgggacgagggatacgacgtgacggccaggttcctggactactgcgactcgcgcaa 584 ||||||||| ||||||||||| | ||||| |||||||| |||||||||||||||| || Sbjct: 532 ccggtgggatcagggatacgacatcacggcgaggttcctcgactactgcgactcgctcat 591 Query: 585 gcccgggttcgtggcggagatgaacggcaagctcaaggacggctacaacgacgactactt 644 |||||||||||| ||| || | |||| |||| | ||| ||| |||| ||| || | ||| Sbjct: 592 gcccgggttcgtcgcgcagctcaacgccaagatgaagagcgggtacagcgatgatttctt 651 Query: 645 cgtgcagatcctcgggacgagcgcggaccagctgtggaacgactacaaggccaagt 700 || |||||| ||||||| || || | ||||||||||| |||||||| ||||||| Sbjct: 652 cgcgcagattctcgggaagaacgtccagcagctgtggaaggactacaaagccaagt 707 Score = 67.9 bits (34), Expect = 6e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 449 tcgaggggatcgcggactacgtgcggctcaaggccggg 486 ||||||||||||| |||||||||||||||||||||||| Sbjct: 456 tcgaggggatcgccgactacgtgcggctcaaggccggg 493 Score = 54.0 bits (27), Expect = 8e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 91 acgttcgacgtgacgaacgaggcgtcgagcacagccggcggccagcgattcgaca 145 |||||||||| | ||||| ||||||| |||| |||||||||||||| ||||||| Sbjct: 110 acgttcgacgcgtcgaacacggcgtcgggcaccgccggcggccagcgcttcgaca 164
>emb|CT835760.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126A10, full insert sequence Length = 1013 Score = 79.8 bits (40), Expect = 1e-11 Identities = 52/56 (92%) Strand = Plus / Plus Query: 525 ccggtgggacgagggatacgacgtgacggccaggttcctggactactgcgactcgc 580 |||||||||| |||| |||||||||||||| |||||||| |||||||||||||||| Sbjct: 541 ccggtgggaccaggggtacgacgtgacggcgaggttcctcgactactgcgactcgc 596 Score = 67.9 bits (34), Expect = 6e-08 Identities = 94/114 (82%) Strand = Plus / Plus Query: 589 gggttcgtggcggagatgaacggcaagctcaaggacggctacaacgacgactacttcgtg 648 |||||||||||| || | ||||||||| | |||||||| |||| |||||||| |||||| Sbjct: 611 gggttcgtggcgcagctcaacggcaagatgaaggacggatacagcgacgacttcttcgtc 670 Query: 649 cagatcctcgggacgagcgcggaccagctgtggaacgactacaaggccaagtac 702 |||||| ||| | || || |||||||| ||| | || ||||||||||||||| Sbjct: 671 cagatctccggcaagaccgtcgaccagctctggcaagattacaaggccaagtac 724 Score = 50.1 bits (25), Expect = 0.013 Identities = 34/37 (91%) Strand = Plus / Plus Query: 379 gtgctgtaccacgaggtggtgcacgtgtggcagtggg 415 |||||||||||||||| | ||||||||||||||||| Sbjct: 398 gtgctgtaccacgaggcgacgcacgtgtggcagtggg 434
>ref|NM_001071460.1| Oryza sativa (japonica cultivar-group) Os10g0490900 (Os10g0490900) mRNA, complete cds Length = 768 Score = 79.8 bits (40), Expect = 1e-11 Identities = 52/56 (92%) Strand = Plus / Plus Query: 525 ccggtgggacgagggatacgacgtgacggccaggttcctggactactgcgactcgc 580 |||||||||| |||| |||||||||||||| |||||||| |||||||||||||||| Sbjct: 576 ccggtgggaccaggggtacgacgtgacggcgaggttcctcgactactgcgactcgc 631 Score = 60.0 bits (30), Expect = 1e-05 Identities = 57/66 (86%) Strand = Plus / Plus Query: 589 gggttcgtggcggagatgaacggcaagctcaaggacggctacaacgacgactacttcgtg 648 |||||||||||| || | ||||||||| | |||||||| |||| |||||||| |||||| Sbjct: 646 gggttcgtggcgcagctcaacggcaagatgaaggacggatacagcgacgacttcttcgtc 705 Query: 649 cagatc 654 |||||| Sbjct: 706 cagatc 711 Score = 50.1 bits (25), Expect = 0.013 Identities = 34/37 (91%) Strand = Plus / Plus Query: 379 gtgctgtaccacgaggtggtgcacgtgtggcagtggg 415 |||||||||||||||| | ||||||||||||||||| Sbjct: 433 gtgctgtaccacgaggcgacgcacgtgtggcagtggg 469
>ref|NM_001071459.1| Oryza sativa (japonica cultivar-group) Os10g0490800 (Os10g0490800) mRNA, complete cds Length = 687 Score = 77.8 bits (39), Expect = 6e-11 Identities = 48/51 (94%) Strand = Plus / Plus Query: 379 gtgctgtaccacgaggtggtgcacgtgtggcagtgggggctgcaggactac 429 |||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 355 gtgctgtaccacgaggcgacgcacgtgtggcagtgggggctgcaggactac 405 Score = 75.8 bits (38), Expect = 2e-10 Identities = 130/158 (82%), Gaps = 2/158 (1%) Strand = Plus / Plus Query: 546 cgtgacggccaggttcctggactactgcgactcgcg-caagcccgggttcgtggcggaga 604 ||||||||| |||||| | |||||||||||| ||| |||||| |||||||| || || | Sbjct: 522 cgtgacggcgaggttcttcgactactgcgaca-gcgtcaagccagggttcgtcgccgaca 580 Query: 605 tgaacggcaagctcaaggacggctacaacgacgactacttcgtgcagatcctcgggacga 664 | || | |||| | |||||||| ||||| | ||||||||||||||||||| ||||| || Sbjct: 581 tcaatgccaagttgaaggacgggtacaatgtcgactacttcgtgcagatcaccgggaaga 640 Query: 665 gcgcggaccagctgtggaacgactacaaggccaagtac 702 || | | ||||||||| | || ||||||||||||||| Sbjct: 641 ccgtgcagcagctgtggcaggattacaaggccaagtac 678 Score = 61.9 bits (31), Expect = 3e-06 Identities = 94/115 (81%) Strand = Plus / Plus Query: 91 acgttcgacgtgacgaacgaggcgtcgagcacagccggcggccagcgattcgacagggag 150 |||||||| | ||||||| |||||||||||| |||||||| ||||| |||||| ||||| Sbjct: 64 acgttcgatgcgacgaacacggcgtcgagcaccgccggcgggcagcggttcgaccgggag 123 Query: 151 tacggcgccgcctacgccaagcaagtgctctcggatgcttcctccttcacctggg 205 ||||| | |||||| ||||| |||||| | || || || ||||||| ||||| Sbjct: 124 gtcggcgtggactacgcgaagcaggtgctcgccgacgcgtcgtccttcatctggg 178
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 46.1 bits (23), Expect = 0.21 Identities = 35/39 (89%) Strand = Plus / Minus Query: 245 ccgatggcgacaccgtcaccctcgccgtccgcgacacga 283 ||||||||| |||| |||||||||||| ||||| ||||| Sbjct: 2117239 ccgatggcggcaccatcaccctcgccgcccgcgccacga 2117201
>ref|XM_421792.2| PREDICTED: Gallus gallus inositol polyphosphate-5-phosphatase F (INPP5F), mRNA Length = 3613 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Plus Query: 504 ggtgaaggagggcggcggcagc 525 |||||||||||||||||||||| Sbjct: 143 ggtgaaggagggcggcggcagc 164
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 44.1 bits (22), Expect = 0.82 Identities = 28/30 (93%) Strand = Plus / Plus Query: 242 ccgccgatggcgacaccgtcaccctcgccg 271 |||||||||||||||||||| || |||||| Sbjct: 1205664 ccgccgatggcgacaccgtcgccgtcgccg 1205693
>emb|CR407401.1| Gallus gallus finished cDNA, clone ChEST710n2 Length = 1096 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Plus Query: 504 ggtgaaggagggcggcggcagc 525 |||||||||||||||||||||| Sbjct: 148 ggtgaaggagggcggcggcagc 169
>gb|CP000478.1| Syntrophobacter fumaroxidans MPOB, complete genome Length = 4990251 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 agcccgggttcgtggcggaga 604 ||||||||||||||||||||| Sbjct: 3433677 agcccgggttcgtggcggaga 3433657
>gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome Length = 3225748 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 683 acgactacaaggccaagtactcccagggc 711 |||||||| |||||||||||||| ||||| Sbjct: 2961510 acgactacgaggccaagtactccgagggc 2961538
>ref|XM_601516.2| PREDICTED: Bos taurus similar to keratin 5b (LOC523221), mRNA Length = 1590 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 tcctcctcctggccctggcag 73 ||||||||||||||||||||| Sbjct: 569 tcctcctcctggccctggcag 549
>emb|AL138741.13| Human DNA sequence from clone RP3-516D24 on chromosome 6, complete sequence Length = 67372 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 cctccttcacctggggcatct 211 ||||||||||||||||||||| Sbjct: 53555 cctccttcacctggggcatct 53575
>gb|AC093618.4| Homo sapiens BAC clone RP13-570B21 from 4, complete sequence Length = 9788 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 ttcctccttcacctggggcat 209 ||||||||||||||||||||| Sbjct: 1925 ttcctccttcacctggggcat 1905
>gb|AC006287.1|AC006287 Homo sapiens, clone hRPK.22_A_1, complete sequence Length = 176153 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 ttcctccttcacctggggcat 209 ||||||||||||||||||||| Sbjct: 76 ttcctccttcacctggggcat 96
>emb|X99395.1|MMENOGD M.musculus gene encoding endonuclease G Length = 3525 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 cgcagcagccgctgtcctcct 59 ||||||||||||||||||||| Sbjct: 2576 cgcagcagccgctgtcctcct 2556 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 105,188,864 Number of extensions: 5840121 Number of successful extensions: 130658 Number of sequences better than 10.0: 24 Number of HSP's gapped: 130642 Number of HSP's successfully gapped: 64 Length of query: 858 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 836 Effective length of database: 18,508,616,841 Effective search space: 15473203679076 Effective search space used: 15473203679076 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
