ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf25i13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O54916:REPS1_MOUSE RalBP1-associated Eps domain-containing prote... 37 0.33
2Q61CX7:LIN28_CAEBR Protein lin-28 - Caenorhabditis briggsae 35 0.74
3P50851:LRBA_HUMAN Lipopolysaccharide-responsive and beige-like a... 33 3.7
4O18964:SYNJ1_BOVIN Synaptojanin-1 - Bos taurus (Bovine) 33 4.8
5Q811L6:MAST4_MOUSE Microtubule-associated serine/threonine-prote... 33 4.8
6P39935:IF4F1_YEAST Eukaryotic initiation factor 4F subunit p150 ... 32 6.2
7Q864S8:BRCA2_FELCA Breast cancer type 2 susceptibility protein h... 32 6.2
8O95359:TACC2_HUMAN Transforming acidic coiled-coil-containing pr... 32 8.1
9P49796:RGS3_HUMAN Regulator of G-protein signaling 3 - Homo sapi... 32 8.1

>O54916:REPS1_MOUSE RalBP1-associated Eps domain-containing protein 1 - Mus musculus|
            (Mouse)
          Length = 743
 Score = 36.6 bits (83), Expect = 0.33
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
 Frame = -1

Query: 1376 ALIHKAPLRCPPAQIHLEAQWRLPSSQDHKRP*TQL*ALSSLLPHRHN-------PSSST 1218
            A++H  P+R  P++IH++      +S DH  P + L    S L   +        PS +T
Sbjct: 397  AIVHPVPIRMTPSKIHMQEMELKRTSSDHTNPTSPLLVKPSDLSEENKINSSVKFPSGNT 456

Query: 1217 LNSIQMAYQHPSDHQRI 1167
            ++    +   PSD ++I
Sbjct: 457  VDGYSSSDSFPSDPEQI 473



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>Q61CX7:LIN28_CAEBR Protein lin-28 - Caenorhabditis briggsae|
          Length = 237

 Score = 35.4 bits (80), Expect = 0.74
 Identities = 28/106 (26%), Positives = 44/106 (41%)
 Frame = +2

Query: 389 VVADGKQASPPSLQEPAAGVSSLKESLSATTLEENSGQPDQDTVMAPTPSPPGSGIWERI 568
           VV++G+         P   VS     ++  +LEE  G P  D + +PTP   GS  W  +
Sbjct: 4   VVSEGRNGGNERYS-PQDDVSKELPDINGLSLEETMGIPSFDRLPSPTPRYFGSCKWFNV 62

Query: 569 RRDWGLAYYIRVDLGGSFHTYPYAGGPFQSLEEAEKAMDRYFLQHR 706
            + +G             H        F+SL+E E+    Y++Q R
Sbjct: 63  SKGYGFVIDDNTGEDLFVHQSNLNMQGFRSLDEGERV--SYYIQER 106



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>P50851:LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein - Homo|
            sapiens (Human)
          Length = 2863

 Score = 33.1 bits (74), Expect = 3.7
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 18/112 (16%)
 Frame = +2

Query: 266  FRDLEDAVRARYVSI----YLSWHRRSKHRDLPPPSTDRMFHFLFVVADGKQASPPSLQE 433
            FRD+ED+ +A+++++    ++S    SK+RD+  P  +R  H       G +    SL E
Sbjct: 1520 FRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNER--HSQSCTETGSENENVSLSE 1577

Query: 434  --PAA----GVSSLKESLSATTLEENSGQPDQDTV--------MAPTPSPPG 547
              PAA      +S++ES S ++         ++T         + P  +PPG
Sbjct: 1578 ITPAAFSTLTTASVEESESTSSARRRDSGIGEETATGLGSHVEVTPHTAPPG 1629



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>O18964:SYNJ1_BOVIN Synaptojanin-1 - Bos taurus (Bovine)|
          Length = 1324

 Score = 32.7 bits (73), Expect = 4.8
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
 Frame = -1

Query: 728  DALIVLDPDVEGNSDPWLSQLPLGSETALP-HKDTCGKSPRDRP*C---NTLIPSHVVF- 564
            DA +  D D+EG+ D + +++    E  LP H      S   RP       +  SH+ + 
Sbjct: 1002 DAEVTADFDMEGDVDDYSAEV----EEILPQHLQPSSSSALARPPVLHPGPVPASHLPYR 1057

Query: 563  ---VPKCLTREAMVSVP*QCPDPAAQSSPPMS*RSATP*GTRHLQQVPATKEVKPASHPP 393
               VP    R +    P + P P A  S P+    AT      LQQ  +++ ++P   PP
Sbjct: 1058 RGPVPSLPVRPSRA--PSRTPGPPASQSSPVDTLPAT-----QLQQKDSSQTLEPKRPPP 1110

Query: 392  PR 387
            PR
Sbjct: 1111 PR 1112



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>Q811L6:MAST4_MOUSE Microtubule-associated serine/threonine-protein kinase 4 - Mus|
           musculus (Mouse)
          Length = 2618

 Score = 32.7 bits (73), Expect = 4.8
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = +2

Query: 443 GVSSLKESLSATTLEENSGQPDQDTVMAPTPSPPGSGIWERIRRDWGLAYYIRVDLGGSF 622
           G SS + S  + TL E  G+P + +  +  P PPG  +  R+   W  A  + ++ G   
Sbjct: 35  GASSAESSSGSETLSEE-GEPSRFSCRSQPPRPPGGALGTRLPAAWAPA-RVALERGVPT 92

Query: 623 HTYPYAGGPFQSLEEAEKA 679
              P+ GG    + +   A
Sbjct: 93  LPLPHPGGAVLPVPQVSSA 111



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>P39935:IF4F1_YEAST Eukaryotic initiation factor 4F subunit p150 - Saccharomyces|
            cerevisiae (Baker's yeast)
          Length = 952

 Score = 32.3 bits (72), Expect = 6.2
 Identities = 22/69 (31%), Positives = 29/69 (42%)
 Frame = +2

Query: 269  RDLEDAVRARYVSIYLSWHRRSKHRDLPPPSTDRMFHFLFVVADGKQASPPSLQEPAAGV 448
            R L++  R+       S +R S  RD PP S D             Q +PP  +EPAA  
Sbjct: 875  RQLKNNSRSNSRRTNNSSNRHSFRRDAPPASKDSFITTRTYSQRNSQRAPPPKEEPAAPT 934

Query: 449  SSLKESLSA 475
            S+     SA
Sbjct: 935  STATNMFSA 943



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>Q864S8:BRCA2_FELCA Breast cancer type 2 susceptibility protein homolog - Felis|
           silvestris catus (Cat)
          Length = 3372

 Score = 32.3 bits (72), Expect = 6.2
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 392 VADGKQASPPSLQEPAAGVSSLKES-LSATTLEENSGQPDQDTVMAPTPSPPGS 550
           VAD K+   P++ +P+   S +++S +   TL+  S  PD+ + + P P  P S
Sbjct: 718 VADRKEEILPAVSQPSVPYSEVEDSGIHFQTLKSFSSDPDKSSQLTPHPRDPPS 771



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>O95359:TACC2_HUMAN Transforming acidic coiled-coil-containing protein 2 - Homo sapiens|
            (Human)
          Length = 2948

 Score = 32.0 bits (71), Expect = 8.1
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +2

Query: 338  HRDLPPPSTDRMFHFLFVVADGKQASPPSLQEPAAGVSSLKESLSATTLEENSGQPDQDT 517
            H  LPP + + +        D  +AS PS  +PA  +S   +S      EE    P+  T
Sbjct: 1907 HAGLPPSAAEHIVSPSAPAGDRVEASTPSCPDPAKDLSRSSDS------EEAFETPESTT 1960

Query: 518  VMAPTPSPP 544
             +   P+PP
Sbjct: 1961 PVKAPPAPP 1969



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>P49796:RGS3_HUMAN Regulator of G-protein signaling 3 - Homo sapiens (Human)|
          Length = 1198

 Score = 32.0 bits (71), Expect = 8.1
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -1

Query: 509 DPAAQSSPPMS*RSATP*GTRHLQQVPATKEVKPASHPPPRTGSGTSYRLKGGADP 342
           +PA    P  S  SAT  G+      P +K+V P   PPP         L  G +P
Sbjct: 733 EPAPSQEPLSSKDSATSEGSPPGPDAPPSKDVPPCQEPPPAQDLSPCQDLPAGQEP 788


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 303,382,808
Number of extensions: 7147852
Number of successful extensions: 21926
Number of sequences better than 10.0: 9
Number of HSP's gapped: 21907
Number of HSP's successfully gapped: 9
Length of query: 568
Length of database: 100,686,439
Length adjustment: 119
Effective length of query: 449
Effective length of database: 68,045,334
Effective search space: 30552354966
Effective search space used: 30552354966
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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