| Clone Name | FLbaf25f18 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL110115.38|HSJ324O17 Human DNA sequence from clone RP3-324O17 on chromosome 20 Contains the 5' end of the ID1 gene for inhibitor of DNA binding 1, dominant negative helix-loop-helix protein, two novel genes, the 3' end of the HM13 gene for histocompatibility (minor) 13 an MCT-1 (multiple copies in a T-cell malignancies) pseudogene and five CpG islands, complete sequence Length = 79419 Score = 48.1 bits (24), Expect = 0.094 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1271 atctttcaaatgcccatattgccc 1294 |||||||||||||||||||||||| Sbjct: 25871 atctttcaaatgcccatattgccc 25848
>emb|BX647112.1|HSM807256 Homo sapiens genomic DNA; cDNA DKFZp686O07111 (from clone DKFZp686O07111) Length = 5905 Score = 48.1 bits (24), Expect = 0.094 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1271 atctttcaaatgcccatattgccc 1294 |||||||||||||||||||||||| Sbjct: 4863 atctttcaaatgcccatattgccc 4840
>emb|BX248583.1| Blochmannia floridanus complete genome Length = 705557 Score = 46.1 bits (23), Expect = 0.37 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1037 agtgttgccaattcttcttaaac 1059 ||||||||||||||||||||||| Sbjct: 230150 agtgttgccaattcttcttaaac 230128
>gb|AC130800.23| Medicago truncatula clone mth2-36b7, complete sequence Length = 133868 Score = 46.1 bits (23), Expect = 0.37 Identities = 35/39 (89%) Strand = Plus / Minus Query: 1179 caaggtagcgatgagaatcctccaatgcttcttccatgt 1217 |||||||| || ||||||||||||||||| || |||||| Sbjct: 13668 caaggtagtgaagagaatcctccaatgctgctgccatgt 13630
>gb|AC148396.3| Medicago truncatula chromosome 2 BAC clone mth2-17k4, complete sequence Length = 108273 Score = 46.1 bits (23), Expect = 0.37 Identities = 35/39 (89%) Strand = Plus / Minus Query: 1179 caaggtagcgatgagaatcctccaatgcttcttccatgt 1217 |||||||| || ||||||||||||||||| || |||||| Sbjct: 107931 caaggtagtgaagagaatcctccaatgctgctgccatgt 107893
>gb|AC153526.13| Mus musculus 10 BAC RP23-383C2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 200117 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1094 gtctatgaaagaatttcctttc 1115 |||||||||||||||||||||| Sbjct: 17973 gtctatgaaagaatttcctttc 17994
>gb|AC140329.3| Mus musculus BAC clone RP23-404O10 from chromosome 14, complete sequence Length = 202811 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1333 tctgaggatttcttactctgtg 1354 |||||||||||||||||||||| Sbjct: 171795 tctgaggatttcttactctgtg 171816
>dbj|AK049796.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530050H12 product:unclassifiable, full insert sequence Length = 2389 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1333 tctgaggatttcttactctgtg 1354 |||||||||||||||||||||| Sbjct: 1967 tctgaggatttcttactctgtg 1988
>gb|AF491350.1| Mus musculus hemopoietic lineage switch protein 5 (Hls5) gene, exons 1 through 6 and complete cds Length = 22979 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1333 tctgaggatttcttactctgtg 1354 |||||||||||||||||||||| Sbjct: 8390 tctgaggatttcttactctgtg 8411
>gb|AC153525.12| Mus musculus 10 BAC RP23-440I21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 199418 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1094 gtctatgaaagaatttcctttc 1115 |||||||||||||||||||||| Sbjct: 36706 gtctatgaaagaatttcctttc 36685
>gb|AC018760.4|AC018760 Homo sapiens chromosome 5 clone CTB-99P17, complete sequence Length = 95855 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1245 gtgaaattatcaaagaacagct 1266 |||||||||||||||||||||| Sbjct: 3124 gtgaaattatcaaagaacagct 3103
>gb|AC010219.4|AC010219 Homo sapiens chromosome 5 clone CTC-251I16, complete sequence Length = 127922 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1245 gtgaaattatcaaagaacagct 1266 |||||||||||||||||||||| Sbjct: 14149 gtgaaattatcaaagaacagct 14170
>gb|AC120425.12| Mus musculus chromosome 14, clone RP24-510K2, complete sequence Length = 209178 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1333 tctgaggatttcttactctgtg 1354 |||||||||||||||||||||| Sbjct: 183792 tctgaggatttcttactctgtg 183771
>emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12 Length = 144628 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 520 tactgaatgagattattgcaaa 541 |||||||||||||||||||||| Sbjct: 29110 tactgaatgagattattgcaaa 29131
>emb|CT832253.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA125B06, full insert sequence Length = 1608 Score = 42.1 bits (21), Expect = 5.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 1252 tatcaaagaacagctcccgatctttcaaatgcccata 1288 ||||||||| ||||||| || | |||||||||||||| Sbjct: 1332 tatcaaagagcagctccagacccttcaaatgcccata 1368
>ref|NM_001067795.1| Oryza sativa (japonica cultivar-group) Os08g0215200 (Os08g0215200) mRNA, partial cds Length = 3006 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 gatgctgcatcaaacctaaac 344 ||||||||||||||||||||| Sbjct: 1987 gatgctgcatcaaacctaaac 1967
>ref|NM_001064494.1| Oryza sativa (japonica cultivar-group) Os06g0588900 (Os06g0588900) mRNA, complete cds Length = 1601 Score = 42.1 bits (21), Expect = 5.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 1252 tatcaaagaacagctcccgatctttcaaatgcccata 1288 ||||||||| ||||||| || | |||||||||||||| Sbjct: 1331 tatcaaagagcagctccagacccttcaaatgcccata 1367
>gb|AC099645.11| Mus musculus chromosome 15, clone RP23-426G4, complete sequence Length = 208095 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1462 atataaagcatgaaagagatg 1482 ||||||||||||||||||||| Sbjct: 174602 atataaagcatgaaagagatg 174622
>gb|AC163008.9| Mus musculus chromosome 15, clone RP23-105P11, complete sequence Length = 211071 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1462 atataaagcatgaaagagatg 1482 ||||||||||||||||||||| Sbjct: 114252 atataaagcatgaaagagatg 114232
>gb|AC092327.4| Homo sapiens chromosome 16 clone RP11-158I3, complete sequence Length = 189756 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1067 ggtactcactgcaaaaaggga 1087 ||||||||||||||||||||| Sbjct: 57763 ggtactcactgcaaaaaggga 57743
>gb|AC011480.3| Homo sapiens chromosome 19 clone CTB-124I16, complete sequence Length = 80878 Score = 42.1 bits (21), Expect = 5.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1197 cctccaatgcttcttccatgtgggc 1221 ||||||||||||||||||| ||||| Sbjct: 37938 cctccaatgcttcttccatctgggc 37914
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 5.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 aaagcagaaacttgcatcctcaaga 245 |||||||||||||||||| |||||| Sbjct: 1088231 aaagcagaaacttgcatcttcaaga 1088255
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 gatgctgcatcaaacctaaac 344 ||||||||||||||||||||| Sbjct: 6725217 gatgctgcatcaaacctaaac 6725197
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 5.8 Identities = 33/37 (89%) Strand = Plus / Minus Query: 1252 tatcaaagaacagctcccgatctttcaaatgcccata 1288 ||||||||| ||||||| || | |||||||||||||| Sbjct: 22715722 tatcaaagagcagctccagacccttcaaatgcccata 22715686
>gb|AC040170.9| Homo sapiens chromosome 16 clone RP11-514D23, complete sequence Length = 173012 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1067 ggtactcactgcaaaaaggga 1087 ||||||||||||||||||||| Sbjct: 21419 ggtactcactgcaaaaaggga 21439
>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0633E08 Length = 136471 Score = 42.1 bits (21), Expect = 5.8 Identities = 33/37 (89%) Strand = Plus / Minus Query: 1252 tatcaaagaacagctcccgatctttcaaatgcccata 1288 ||||||||| ||||||| || | |||||||||||||| Sbjct: 2669 tatcaaagagcagctccagacccttcaaatgcccata 2633
>dbj|AP005966.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1047H05 Length = 187273 Score = 42.1 bits (21), Expect = 5.8 Identities = 33/37 (89%) Strand = Plus / Minus Query: 1252 tatcaaagaacagctcccgatctttcaaatgcccata 1288 ||||||||| ||||||| || | |||||||||||||| Sbjct: 181131 tatcaaagagcagctccagacccttcaaatgcccata 181095
>dbj|AP005754.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0089L03 Length = 172106 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 gatgctgcatcaaacctaaac 344 ||||||||||||||||||||| Sbjct: 77619 gatgctgcatcaaacctaaac 77599
>dbj|AK072536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133P19, full insert sequence Length = 3007 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 gatgctgcatcaaacctaaac 344 ||||||||||||||||||||| Sbjct: 1987 gatgctgcatcaaacctaaac 1967
>dbj|AK071741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110B12, full insert sequence Length = 1603 Score = 42.1 bits (21), Expect = 5.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 1252 tatcaaagaacagctcccgatctttcaaatgcccata 1288 ||||||||| ||||||| || | |||||||||||||| Sbjct: 1333 tatcaaagagcagctccagacccttcaaatgcccata 1369
>gb|AY104827.1| Zea mays PCO104267 mRNA sequence Length = 1531 Score = 42.1 bits (21), Expect = 5.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 939 tgggagaagctagctgaggag 959 ||||||||||||||||||||| Sbjct: 901 tgggagaagctagctgaggag 921
>emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311_G04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 97056 Score = 42.1 bits (21), Expect = 5.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 aaagcagaaacttgcatcctcaaga 245 |||||||||||||||||| |||||| Sbjct: 83503 aaagcagaaacttgcatcttcaaga 83527
>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126974 Score = 42.1 bits (21), Expect = 5.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 aaagcagaaacttgcatcctcaaga 245 |||||||||||||||||| |||||| Sbjct: 27214 aaagcagaaacttgcatcttcaaga 27238 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 291,941,490 Number of extensions: 15461052 Number of successful extensions: 289834 Number of sequences better than 10.0: 34 Number of HSP's gapped: 289834 Number of HSP's successfully gapped: 34 Length of query: 1522 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1499 Effective length of database: 18,503,978,556 Effective search space: 27737463855444 Effective search space used: 27737463855444 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)