ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf25f18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL110115.38|HSJ324O17 Human DNA sequence from clone RP3-324O... 48 0.094
2emb|BX647112.1|HSM807256 Homo sapiens genomic DNA; cDNA DKFZp686... 48 0.094
3emb|BX248583.1| Blochmannia floridanus complete genome 46 0.37
4gb|AC130800.23| Medicago truncatula clone mth2-36b7, complete se... 46 0.37
5gb|AC148396.3| Medicago truncatula chromosome 2 BAC clone mth2-1... 46 0.37
6gb|AC153526.13| Mus musculus 10 BAC RP23-383C2 (Roswell Park Can... 44 1.5
7gb|AC140329.3| Mus musculus BAC clone RP23-404O10 from chromosom... 44 1.5
8dbj|AK049796.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 44 1.5
9gb|AF491350.1| Mus musculus hemopoietic lineage switch protein 5... 44 1.5
10gb|AC153525.12| Mus musculus 10 BAC RP23-440I21 (Roswell Park Ca... 44 1.5
11gb|AC018760.4|AC018760 Homo sapiens chromosome 5 clone CTB-99P17... 44 1.5
12gb|AC010219.4|AC010219 Homo sapiens chromosome 5 clone CTC-251I1... 44 1.5
13gb|AC120425.12| Mus musculus chromosome 14, clone RP24-510K2, co... 44 1.5
14emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome 3, BA... 44 1.5
15emb|CT832253.1| Oryza sativa (indica cultivar-group) cDNA clone:... 42 5.8
16ref|NM_001067795.1| Oryza sativa (japonica cultivar-group) Os08g... 42 5.8
17ref|NM_001064494.1| Oryza sativa (japonica cultivar-group) Os06g... 42 5.8
18gb|AC099645.11| Mus musculus chromosome 15, clone RP23-426G4, co... 42 5.8
19gb|AC163008.9| Mus musculus chromosome 15, clone RP23-105P11, co... 42 5.8
20gb|AC092327.4| Homo sapiens chromosome 16 clone RP11-158I3, comp... 42 5.8
21gb|AC011480.3| Homo sapiens chromosome 19 clone CTB-124I16, comp... 42 5.8
22dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 5.8
23dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 5.8
24dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 5.8
25gb|AC040170.9| Homo sapiens chromosome 16 clone RP11-514D23, com... 42 5.8
26dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic D... 42 5.8
27dbj|AP005966.3| Oryza sativa (japonica cultivar-group) genomic D... 42 5.8
28dbj|AP005754.3| Oryza sativa (japonica cultivar-group) genomic D... 42 5.8
29dbj|AK072536.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 5.8
30dbj|AK071741.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 5.8
31gb|AY104827.1| Zea mays PCO104267 mRNA sequence 42 5.8
32emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311... 42 5.8
33emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb... 42 5.8

>emb|AL110115.38|HSJ324O17 Human DNA sequence from clone RP3-324O17 on chromosome 20 Contains the
             5' end of the ID1 gene for inhibitor of DNA binding 1,
             dominant negative helix-loop-helix protein, two novel
             genes, the 3' end of the HM13 gene for histocompatibility
             (minor) 13 an MCT-1 (multiple copies in a T-cell
             malignancies) pseudogene and five CpG islands, complete
             sequence
          Length = 79419
 Score = 48.1 bits (24), Expect = 0.094
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 1271  atctttcaaatgcccatattgccc 1294
             ||||||||||||||||||||||||
Sbjct: 25871 atctttcaaatgcccatattgccc 25848



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>emb|BX647112.1|HSM807256 Homo sapiens genomic DNA; cDNA DKFZp686O07111 (from clone
            DKFZp686O07111)
          Length = 5905

 Score = 48.1 bits (24), Expect = 0.094
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 1271 atctttcaaatgcccatattgccc 1294
            ||||||||||||||||||||||||
Sbjct: 4863 atctttcaaatgcccatattgccc 4840



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>emb|BX248583.1| Blochmannia floridanus complete genome
          Length = 705557

 Score = 46.1 bits (23), Expect = 0.37
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 1037   agtgttgccaattcttcttaaac 1059
              |||||||||||||||||||||||
Sbjct: 230150 agtgttgccaattcttcttaaac 230128



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>gb|AC130800.23| Medicago truncatula clone mth2-36b7, complete sequence
          Length = 133868

 Score = 46.1 bits (23), Expect = 0.37
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 1179  caaggtagcgatgagaatcctccaatgcttcttccatgt 1217
             |||||||| || ||||||||||||||||| || ||||||
Sbjct: 13668 caaggtagtgaagagaatcctccaatgctgctgccatgt 13630



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>gb|AC148396.3| Medicago truncatula chromosome 2 BAC clone mth2-17k4, complete sequence
          Length = 108273

 Score = 46.1 bits (23), Expect = 0.37
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                     
Query: 1179   caaggtagcgatgagaatcctccaatgcttcttccatgt 1217
              |||||||| || ||||||||||||||||| || ||||||
Sbjct: 107931 caaggtagtgaagagaatcctccaatgctgctgccatgt 107893



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>gb|AC153526.13| Mus musculus 10 BAC RP23-383C2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 200117

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1094  gtctatgaaagaatttcctttc 1115
             ||||||||||||||||||||||
Sbjct: 17973 gtctatgaaagaatttcctttc 17994



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>gb|AC140329.3| Mus musculus BAC clone RP23-404O10 from chromosome 14, complete sequence
          Length = 202811

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 1333   tctgaggatttcttactctgtg 1354
              ||||||||||||||||||||||
Sbjct: 171795 tctgaggatttcttactctgtg 171816



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>dbj|AK049796.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
            enriched library, clone:C530050H12
            product:unclassifiable, full insert sequence
          Length = 2389

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1333 tctgaggatttcttactctgtg 1354
            ||||||||||||||||||||||
Sbjct: 1967 tctgaggatttcttactctgtg 1988



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>gb|AF491350.1| Mus musculus hemopoietic lineage switch protein 5 (Hls5) gene, exons
            1 through 6 and complete cds
          Length = 22979

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1333 tctgaggatttcttactctgtg 1354
            ||||||||||||||||||||||
Sbjct: 8390 tctgaggatttcttactctgtg 8411



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>gb|AC153525.12| Mus musculus 10 BAC RP23-440I21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 199418

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1094  gtctatgaaagaatttcctttc 1115
             ||||||||||||||||||||||
Sbjct: 36706 gtctatgaaagaatttcctttc 36685



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>gb|AC018760.4|AC018760 Homo sapiens chromosome 5 clone CTB-99P17, complete sequence
          Length = 95855

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1245 gtgaaattatcaaagaacagct 1266
            ||||||||||||||||||||||
Sbjct: 3124 gtgaaattatcaaagaacagct 3103



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>gb|AC010219.4|AC010219 Homo sapiens chromosome 5 clone CTC-251I16, complete sequence
          Length = 127922

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1245  gtgaaattatcaaagaacagct 1266
             ||||||||||||||||||||||
Sbjct: 14149 gtgaaattatcaaagaacagct 14170



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>gb|AC120425.12| Mus musculus chromosome 14, clone RP24-510K2, complete sequence
          Length = 209178

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1333   tctgaggatttcttactctgtg 1354
              ||||||||||||||||||||||
Sbjct: 183792 tctgaggatttcttactctgtg 183771



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>emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12
          Length = 144628

 Score = 44.1 bits (22), Expect = 1.5
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 520   tactgaatgagattattgcaaa 541
             ||||||||||||||||||||||
Sbjct: 29110 tactgaatgagattattgcaaa 29131



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>emb|CT832253.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA125B06, full
            insert sequence
          Length = 1608

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 1252 tatcaaagaacagctcccgatctttcaaatgcccata 1288
            ||||||||| ||||||| || | ||||||||||||||
Sbjct: 1332 tatcaaagagcagctccagacccttcaaatgcccata 1368



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>ref|NM_001067795.1| Oryza sativa (japonica cultivar-group) Os08g0215200 (Os08g0215200)
            mRNA, partial cds
          Length = 3006

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 324  gatgctgcatcaaacctaaac 344
            |||||||||||||||||||||
Sbjct: 1987 gatgctgcatcaaacctaaac 1967



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>ref|NM_001064494.1| Oryza sativa (japonica cultivar-group) Os06g0588900 (Os06g0588900)
            mRNA, complete cds
          Length = 1601

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 1252 tatcaaagaacagctcccgatctttcaaatgcccata 1288
            ||||||||| ||||||| || | ||||||||||||||
Sbjct: 1331 tatcaaagagcagctccagacccttcaaatgcccata 1367



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>gb|AC099645.11| Mus musculus chromosome 15, clone RP23-426G4, complete sequence
          Length = 208095

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1462   atataaagcatgaaagagatg 1482
              |||||||||||||||||||||
Sbjct: 174602 atataaagcatgaaagagatg 174622



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>gb|AC163008.9| Mus musculus chromosome 15, clone RP23-105P11, complete sequence
          Length = 211071

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1462   atataaagcatgaaagagatg 1482
              |||||||||||||||||||||
Sbjct: 114252 atataaagcatgaaagagatg 114232



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>gb|AC092327.4| Homo sapiens chromosome 16 clone RP11-158I3, complete sequence
          Length = 189756

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1067  ggtactcactgcaaaaaggga 1087
             |||||||||||||||||||||
Sbjct: 57763 ggtactcactgcaaaaaggga 57743



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>gb|AC011480.3| Homo sapiens chromosome 19 clone CTB-124I16, complete sequence
          Length = 80878

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 1197  cctccaatgcttcttccatgtgggc 1221
             ||||||||||||||||||| |||||
Sbjct: 37938 cctccaatgcttcttccatctgggc 37914



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
          Length = 27566993

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 221     aaagcagaaacttgcatcctcaaga 245
               |||||||||||||||||| ||||||
Sbjct: 1088231 aaagcagaaacttgcatcttcaaga 1088255



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 324     gatgctgcatcaaacctaaac 344
               |||||||||||||||||||||
Sbjct: 6725217 gatgctgcatcaaacctaaac 6725197



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 1252     tatcaaagaacagctcccgatctttcaaatgcccata 1288
                ||||||||| ||||||| || | ||||||||||||||
Sbjct: 22715722 tatcaaagagcagctccagacccttcaaatgcccata 22715686



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>gb|AC040170.9| Homo sapiens chromosome 16 clone RP11-514D23, complete sequence
          Length = 173012

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1067  ggtactcactgcaaaaaggga 1087
             |||||||||||||||||||||
Sbjct: 21419 ggtactcactgcaaaaaggga 21439



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>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0633E08
          Length = 136471

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 1252 tatcaaagaacagctcccgatctttcaaatgcccata 1288
            ||||||||| ||||||| || | ||||||||||||||
Sbjct: 2669 tatcaaagagcagctccagacccttcaaatgcccata 2633



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>dbj|AP005966.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1047H05
          Length = 187273

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 1252   tatcaaagaacagctcccgatctttcaaatgcccata 1288
              ||||||||| ||||||| || | ||||||||||||||
Sbjct: 181131 tatcaaagagcagctccagacccttcaaatgcccata 181095



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>dbj|AP005754.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0089L03
          Length = 172106

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 324   gatgctgcatcaaacctaaac 344
             |||||||||||||||||||||
Sbjct: 77619 gatgctgcatcaaacctaaac 77599



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>dbj|AK072536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133P19, full
            insert sequence
          Length = 3007

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 324  gatgctgcatcaaacctaaac 344
            |||||||||||||||||||||
Sbjct: 1987 gatgctgcatcaaacctaaac 1967



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>dbj|AK071741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110B12, full
            insert sequence
          Length = 1603

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                 
Query: 1252 tatcaaagaacagctcccgatctttcaaatgcccata 1288
            ||||||||| ||||||| || | ||||||||||||||
Sbjct: 1333 tatcaaagagcagctccagacccttcaaatgcccata 1369



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>gb|AY104827.1| Zea mays PCO104267 mRNA sequence
          Length = 1531

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 939 tgggagaagctagctgaggag 959
           |||||||||||||||||||||
Sbjct: 901 tgggagaagctagctgaggag 921



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>emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311_G04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 97056

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 221   aaagcagaaacttgcatcctcaaga 245
             |||||||||||||||||| ||||||
Sbjct: 83503 aaagcagaaacttgcatcttcaaga 83527



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>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 126974

 Score = 42.1 bits (21), Expect = 5.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 221   aaagcagaaacttgcatcctcaaga 245
             |||||||||||||||||| ||||||
Sbjct: 27214 aaagcagaaacttgcatcttcaaga 27238


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 291,941,490
Number of extensions: 15461052
Number of successful extensions: 289834
Number of sequences better than 10.0: 34
Number of HSP's gapped: 289834
Number of HSP's successfully gapped: 34
Length of query: 1522
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1499
Effective length of database: 18,503,978,556
Effective search space: 27737463855444
Effective search space used: 27737463855444
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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