ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf31b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q0MQH4:NDUS5_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur p... 31 3.1
2O43920:NDUS5_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur p... 31 3.1
3Q4R3M6:NDUS5_MACFA NADH dehydrogenase [ubiquinone] iron-sulfur p... 31 4.1
4Q0MQH3:NDUS5_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur p... 31 4.1
5P50259:TBB_PORPU Tubulin beta chain - Porphyra purpurea 30 9.1

>Q0MQH4:NDUS5_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 - Pan|
           troglodytes (Chimpanzee)
          Length = 106
 Score = 31.2 bits (69), Expect = 3.1
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +2

Query: 113 VDGGEEEEAMASGWGINGNKGRCYDF---WLDFSSCMSRCRQPSDCGLLREDYLECLHHS 283
           +  GE+   MA         GRC+ F   W++ +  +   R   +C +  +D++ECL   
Sbjct: 20  IQSGEQPYKMA---------GRCHAFEKEWIECAHGIGYTRAEKECKIEYDDFVECLLRQ 70

Query: 284 KEFQRRNRI 310
           K  +R   I
Sbjct: 71  KTMRRAGTI 79



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>O43920:NDUS5_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 - Homo|
           sapiens (Human)
          Length = 106

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +2

Query: 113 VDGGEEEEAMASGWGINGNKGRCYDF---WLDFSSCMSRCRQPSDCGLLREDYLECLHHS 283
           +  GE+   MA         GRC+ F   W++ +  +   R   +C +  +D++ECL   
Sbjct: 20  IQSGEQPYKMA---------GRCHAFEKEWIECAHGIGYTRAEKECKIEYDDFVECLLRQ 70

Query: 284 KEFQRRNRI 310
           K  +R   I
Sbjct: 71  KTMRRAGTI 79



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>Q4R3M6:NDUS5_MACFA NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 - Macaca|
           fascicularis (Crab eating macaque) (Cynomolgus monkey)
          Length = 106

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 176 RCYDF---WLDFSSCMSRCRQPSDCGLLREDYLECLHHSKEFQRRNRI 310
           RC+ F   W++ +  +   R   +C +  +D++ECL   K  +R N I
Sbjct: 32  RCHAFEKEWIECAHGIGAIRAEKECKIEYDDFIECLLRQKTMRRVNAI 79



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>Q0MQH3:NDUS5_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 - Gorilla|
           gorilla gorilla (Lowland gorilla)
          Length = 106

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 173 GRCYDF---WLDFSSCMSRCRQPSDCGLLREDYLECLHHSKEFQRRNRI 310
           GRC+ F   W++ +  +   R   +C +  +D++ECL   K  +R   I
Sbjct: 31  GRCHAFEKEWIECAHGIGYTRAEKECKIEYDDFVECLLRQKTMRRAGTI 79



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>P50259:TBB_PORPU Tubulin beta chain - Porphyra purpurea|
          Length = 457

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +2

Query: 86  ERRKGEAAKVDGGEEEEAMASGWGINGNK 172
           E ++ EAA V+G EEE+A A G  +NG++
Sbjct: 421 ELQQYEAATVEGEEEEDAYAEGAVVNGDQ 449


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 65,727,978
Number of extensions: 1068179
Number of successful extensions: 2618
Number of sequences better than 10.0: 5
Number of HSP's gapped: 2618
Number of HSP's successfully gapped: 5
Length of query: 205
Length of database: 100,686,439
Length adjustment: 108
Effective length of query: 97
Effective length of database: 71,062,579
Effective search space: 6893070163
Effective search space used: 6893070163
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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