ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf31b04 |
|---|---|
| Clone Library Name | barley_pub |
>Q9NX74:DUS2L_HUMAN tRNA-dihydrouridine synthase 2-like - Homo sapiens (Human)| Length = 493 Score = 301 bits (771), Expect = 5e-81 Identities = 158/314 (50%), Positives = 210/314 (66%), Gaps = 4/314 (1%) Frame = +2 Query: 164 YRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERG 343 Y NKL+LAPMVR GTLP RLLA +YGADI Y EE+ID K + C+RV NE L T DF+ Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69 Query: 344 TDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGS 523 D VVFRTC +E++RVVFQMGTSDA RAL A +V NDVA ID+NMGCPK +S GGMG+ Sbjct: 70 -DRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGA 128 Query: 524 ALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVELARRIEKCGVPALAVHGRKVK 703 ALLS P+ I IL+TL + PVTCKIR+L + +DT+ L +RIE+ G+ A+AVHGRK + Sbjct: 129 ALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKRE 188 Query: 704 DRPRDPAKWDEIADVVSALSIPVIANG----DVFEYEDFKRIKDATGATSVMAARGALWN 871 +RP+ P + I + LSIPVIANG + +Y D + + AT A+SVM AR A+WN Sbjct: 189 ERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWN 248 Query: 872 ASIFSPNGKVPWEDFKREYVRKTILWDNCIKSTKTTLREIIMHYICLELPEGKGVIKCGS 1051 SIF G P E+ ++Y+R + +DN +TK L +++ LE P+G+ + S Sbjct: 249 PSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQ--LESPQGRLLHAAQS 306 Query: 1052 SADVARLYGEEDYY 1093 S ++ +G +Y Sbjct: 307 SREICEAFGLGAFY 320
>Q9D7B1:DUS2L_MOUSE tRNA-dihydrouridine synthase 2-like - Mus musculus (Mouse)| Length = 493 Score = 295 bits (756), Expect = 3e-79 Identities = 156/314 (49%), Positives = 209/314 (66%), Gaps = 4/314 (1%) Frame = +2 Query: 164 YRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERG 343 Y NKL+LAPMVR GTLP RLLA +YGADI Y EE+ID K + C+RV NE L T DF+ Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPD 69 Query: 344 TDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGS 523 D VVFRTC +E+ RVVFQMGTSDA RAL A +V NDVA ID+NMGCPK +S GGMG+ Sbjct: 70 -DRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGA 128 Query: 524 ALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVELARRIEKCGVPALAVHGRKVK 703 ALLS P+ I IL+TL + + PVTCKIR+L + +DT+ L +RIE+ G+ A+AVHGR Sbjct: 129 ALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRD 188 Query: 704 DRPRDPAKWDEIADVVSALSIPVIANG----DVFEYEDFKRIKDATGATSVMAARGALWN 871 +RP+ P + I + LSIPVIANG + ++ D + + AT A+SVM AR A+WN Sbjct: 189 ERPQHPVSCEVIRAIAETLSIPVIANGGSHDHIQQHVDIEDFRQATAASSVMVARAAMWN 248 Query: 872 ASIFSPNGKVPWEDFKREYVRKTILWDNCIKSTKTTLREIIMHYICLELPEGKGVIKCGS 1051 SIF +G P E+ ++Y+R + +DN +TK L +++ LE P+G+ + S Sbjct: 249 PSIFLKDGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQ--LESPQGRLLHAAQS 306 Query: 1052 SADVARLYGEEDYY 1093 S ++ +G +Y Sbjct: 307 SQEICEAFGLGAFY 320
>P53720:DUS2_YEAST tRNA-dihydrouridine synthase 2 - Saccharomyces cerevisiae (Baker's| yeast) Length = 384 Score = 174 bits (441), Expect = 1e-42 Identities = 113/298 (37%), Positives = 172/298 (57%), Gaps = 21/298 (7%) Frame = +2 Query: 164 YRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFL--- 334 Y KLVLAPMVRAG LP RL+A +GAD+ + EIID K + C R N +L T D++ Sbjct: 4 YAGKLVLAPMVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCVRKENTALQTVDYVVPS 63 Query: 335 --ERGTDSVVFRTCPQ-ERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSV 505 + +++VFRT P+ E +++FQ+G++ A +AA V NDV+ IDIN GCPK FS+ Sbjct: 64 KVQTRPETLVFRTYPKLESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHFSI 123 Query: 506 SGGMGSALLSKPELIHDILTTLRRNL----NTPVTCKIRLLNTRQDTVELARRIEKCGVP 673 GMGSALL P+ + IL L +N+ + P++ KIRLL+T+QDT++L +R+ G+ Sbjct: 124 HSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATGIT 183 Query: 674 ALAVHGRKVKDRPRDPAKWD---EIADVVSALSIPVIANGDVFEYEDFKRIK-DATGATS 841 L VH RK + R R+ D EI ++ A ++ +I NG + + F ++ + T+ Sbjct: 184 NLTVHCRKTEMRNREQPITDYIAEIYEICQANNVSLIVNGAIRDRSHFHDLQANHWKNTN 243 Query: 842 V--MAARGALWNASIFSPNGK-----VPWEDFKREYVRKTILWDNCIKSTKTTLREII 994 + M A A + ++F K W RE+++ +DN I +TK L I+ Sbjct: 244 IGGMIAECAERDPTVFDHTSKPSEDGPSWVVACREFIQWATKFDNHIGNTKYMLSRIV 301
>Q32M08:DUS4L_MOUSE tRNA-dihydrouridine synthase 4-like - Mus musculus (Mouse)| Length = 324 Score = 137 bits (344), Expect = 2e-31 Identities = 85/258 (32%), Positives = 130/258 (50%), Gaps = 9/258 (3%) Frame = +2 Query: 179 VLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTDSVV 358 V APMVR L FR L +Y D+ Y II FV + + T Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQ---------- 79 Query: 359 FRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSK 538 CP ++ Q +DA AA +VC IDIN GCP+ ++++ G G+ L++K Sbjct: 80 -GDCP-----LIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINK 133 Query: 539 PELIHDILTTLRRNLNTP---VTCKIRLLNTRQDTVELARRIEKCGVPALAVHGRKVKDR 709 PEL+HD++ +R + +P V+ KIR+ + T++L R+ E GV + VHGR V++R Sbjct: 134 PELVHDMVRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEER 193 Query: 710 PRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASIFSP 889 P +D I + +SIP++ANGD+ ++ + + TG VM ARG L N ++F+ Sbjct: 194 -HQPVHYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAG 252 Query: 890 NGKVP------WEDFKRE 925 + P W D E Sbjct: 253 YEETPLKCIWDWVDISLE 270
>O95620:DUS4L_HUMAN tRNA-dihydrouridine synthase 4-like - Homo sapiens (Human)| Length = 317 Score = 134 bits (338), Expect = 9e-31 Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 3/245 (1%) Frame = +2 Query: 179 VLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTDSVV 358 V APMVR L FR L +Y D+ Y I+ FV + + T Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQ---------- 79 Query: 359 FRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSK 538 CP ++ Q +DA AA IVC IDIN GCP+ ++++ G G+ L++K Sbjct: 80 -GDCP-----LIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133 Query: 539 PELIHDILTTLRRNLNTP---VTCKIRLLNTRQDTVELARRIEKCGVPALAVHGRKVKDR 709 PEL+ D++ +R + TP V+ KIR+ + + TV+L ++ E GV + VHGR ++R Sbjct: 134 PELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEER 193 Query: 710 PRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASIFSP 889 P +D I + +SIPVIANGD+ ++ + + TG VM ARG L N ++F+ Sbjct: 194 -HQPVHYDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAG 252 Query: 890 NGKVP 904 + P Sbjct: 253 YEETP 257
>Q06063:DUS4_YEAST tRNA-dihydrouridine synthase 4 - Saccharomyces cerevisiae (Baker's| yeast) Length = 367 Score = 125 bits (313), Expect = 7e-28 Identities = 79/248 (31%), Positives = 117/248 (47%), Gaps = 5/248 (2%) Frame = +2 Query: 179 VLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTDSVV 358 + PMVR LPFR L EY DI Y I+ ++V + L T + Sbjct: 42 IAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNN---------- 91 Query: 359 FRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSK 538 E ++ Q+G ++ LK E+V I IN GCP + G+G AL+ Sbjct: 92 ------EDTPLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALIYN 145 Query: 539 PELIHDILTTLRRNLNTP--VTCKIRLLNTRQDTVELARRIEKCGVPALAVHGRKVKDRP 712 +L+ ++ ++ + KIR+ +TVEL R++ GV + +HGR + R Sbjct: 146 SDLLCSMVHAVKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRS 205 Query: 713 RDPAKWDEIADVVSALS---IPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASIF 883 PA D I ++ +S +PVIANGD F+ D +RI TGA VMA RG L N ++F Sbjct: 206 SQPANLDAIKYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLLSNPALF 265 Query: 884 SPNGKVPW 907 + PW Sbjct: 266 AGYTTCPW 273
>Q6P1R4:DUS1L_HUMAN tRNA-dihydrouridine synthase 1-like - Homo sapiens (Human)| Length = 473 Score = 119 bits (298), Expect = 4e-26 Identities = 79/246 (32%), Positives = 119/246 (48%), Gaps = 2/246 (0%) Frame = +2 Query: 179 VLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTDSVV 358 V+APMV L +RLL+ +GA + Y + FV E+L Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENL-------------Y 66 Query: 359 FRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSK 538 CP++R +V Q +D ++AA + + AID+N+GCP+ + G G+ L + Sbjct: 67 CEVCPEDRPLIV-QFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDE 125 Query: 539 PELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVELARRIEKCGVPALAVHGR--KVKDRP 712 +L+ ++ L+ PVTCKIR+ TV A+ +EK G L VHGR + K Sbjct: 126 WDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPL 185 Query: 713 RDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASIFSPN 892 A W+ I V A++IPV ANG++ +D +R TG VM+A G L N ++F Sbjct: 186 SGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGR 245 Query: 893 GKVPWE 910 WE Sbjct: 246 SPAVWE 251
>Q8K582:DUS1L_RAT tRNA-dihydrouridine synthase 1-like - Rattus norvegicus (Rat)| Length = 438 Score = 119 bits (297), Expect = 5e-26 Identities = 79/246 (32%), Positives = 118/246 (47%), Gaps = 2/246 (0%) Frame = +2 Query: 179 VLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTDSVV 358 V+APMV L +RLL+ +GA + Y + FV E+L Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCD----------- 68 Query: 359 FRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSK 538 CP++R +V Q +D ++AA + + AID+N+GCP+ + G G+ L + Sbjct: 69 --VCPEDRPLIV-QFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEE 125 Query: 539 PELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVELARRIEKCGVPALAVHGR--KVKDRP 712 +L+ ++ L+ PVTCKIR+ TV A+ +EK G L VHGR + K Sbjct: 126 WDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPM 185 Query: 713 RDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASIFSPN 892 A W+ I V A+ IPV ANG++ +D +R TG VM+A G L N ++F Sbjct: 186 AGTASWEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGR 245 Query: 893 GKVPWE 910 WE Sbjct: 246 SPAVWE 251
>Q8C2P3:DUS1L_MOUSE tRNA-dihydrouridine synthase 1-like - Mus musculus (Mouse)| Length = 475 Score = 119 bits (297), Expect = 5e-26 Identities = 79/246 (32%), Positives = 118/246 (47%), Gaps = 2/246 (0%) Frame = +2 Query: 179 VLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTDSVV 358 V+APMV L +RLL+ +GA + Y + FV E+L Sbjct: 20 VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCD----------- 68 Query: 359 FRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSK 538 CP++R +V Q +D ++AA + + AID+N+GCP+ + G G+ L + Sbjct: 69 --VCPEDRPLIV-QFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEE 125 Query: 539 PELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVELARRIEKCGVPALAVHGR--KVKDRP 712 +L+ ++ L+ PVTCKIR+ TV A+ +EK G L VHGR + K Sbjct: 126 WDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPM 185 Query: 713 RDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASIFSPN 892 A W+ I V A+ IPV ANG++ +D +R TG VM+A G L N ++F Sbjct: 186 AGTASWEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGR 245 Query: 893 GKVPWE 910 WE Sbjct: 246 SPAVWE 251
>Q9CLW3:DUSB_PASMU tRNA-dihydrouridine synthase B - Pasteurella multocida| Length = 332 Score = 118 bits (296), Expect = 7e-26 Identities = 81/242 (33%), Positives = 120/242 (49%), Gaps = 3/242 (1%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFV-HCQRVTNESLGTTDFLERG 343 +N++ LAPM PFR + YGA +T+ E + + V H ++ L E G Sbjct: 9 KNRIFLAPMAGITDQPFRRICTHYGAGLTFSEMMSTNPQVWHTEK---SKLRLAHHQEAG 65 Query: 344 TDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGS 523 ++V C + +M + + AEI IDINMGCP GS Sbjct: 66 INAVQIAGCDPD------EMAKAAQINVEYGAEI-------IDINMGCPAKKVNRKMAGS 112 Query: 524 ALLSKPELIHDILTTLRRNLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPALAVHGRK 697 ALL P+L+ IL + +++ PVT KIR ++ +E+A+ E+CG+ AL +HGR Sbjct: 113 ALLQYPDLVKQILNKVVKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRT 172 Query: 698 VKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNAS 877 A++D I V LSIP+IANGD+ E K + D T A ++M RG+L N Sbjct: 173 RSCMFEGEAEYDNIKAVKEQLSIPIIANGDITSAEKAKYVLDYTNADAIMIGRGSLGNPW 232 Query: 878 IF 883 +F Sbjct: 233 LF 234
>Q09504:YQI2_CAEEL Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2 -| Caenorhabditis elegans Length = 284 Score = 114 bits (286), Expect = 9e-25 Identities = 78/241 (32%), Positives = 115/241 (47%), Gaps = 3/241 (1%) Frame = +2 Query: 191 MVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTDSVVFRTC 370 MVR L FR L Y D+ + I F+ ++ + L C Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSV---------------C 45 Query: 371 PQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSKPELI 550 + +V Q T D +AAE+V +D+N GCPK S G GSALLSKPEL+ Sbjct: 46 EGDSPLIV-QFATDDPFVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELL 104 Query: 551 HDILTTLRRNLNTP---VTCKIRLLNTRQDTVELARRIEKCGVPALAVHGRKVKDRPRDP 721 D++ R + P V+ KIR+ + + TV+L R+ E GV L VHGR R +P Sbjct: 105 ADMVRQTRARIPDPDFSVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQR-AEP 163 Query: 722 AKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASIFSPNGKV 901 + V ++S+P+IANG + E+ + + TG +MAA G L N ++F+ + Sbjct: 164 IDIQALRIVKDSVSVPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHEHT 223 Query: 902 P 904 P Sbjct: 224 P 224
>P44965:DUSB_HAEIN tRNA-dihydrouridine synthase B - Haemophilus influenzae| Length = 330 Score = 114 bits (284), Expect = 2e-24 Identities = 85/242 (35%), Positives = 122/242 (50%), Gaps = 3/242 (1%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGT 346 RN+++LAPM PFR L A YGA +T+ E + + V + L ++ L G Sbjct: 9 RNRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDL--GL 66 Query: 347 DSVVFRTCPQERDRVVFQMGTSDAVRALKAAEI-VCNDVAAIDINMGCPKAFSVSGGMGS 523 ++V Q+ SD + +AA I V IDINMGCP GS Sbjct: 67 NAV--------------QIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGS 112 Query: 524 ALLSKPELIHDILTTLRRNLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPALAVHGRK 697 ALL P+L+ IL + +N PVT KIR + ++ V++ + E+CG+ AL VHGR Sbjct: 113 ALLQFPDLVEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT 172 Query: 698 VKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNAS 877 A++D I V A++IPVIANGD+ K + + TGA ++M R AL N Sbjct: 173 RACLFEGEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLNYTGADAIMIGRAALGNPW 232 Query: 878 IF 883 +F Sbjct: 233 LF 234
>P53759:DUS1_YEAST tRNA-dihydrouridine synthase 1 - Saccharomyces cerevisiae (Baker's| yeast) Length = 423 Score = 112 bits (280), Expect = 5e-24 Identities = 73/240 (30%), Positives = 122/240 (50%), Gaps = 4/240 (1%) Frame = +2 Query: 179 VLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTDSVV 358 ++APMV L +R+L+ YGA + Y + F ++ ++ + D S V Sbjct: 32 IVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLD------GSSV 85 Query: 359 FRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSK 538 R +V Q +D L AA++V + A+D+N+GCP+ + G GS L+ + Sbjct: 86 DRP-------LVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 138 Query: 539 PELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVELARRIEKCGVPALAVHG--RKVKDRP 712 +LIH+++ TL +NL PVT KIR+ + + ++ A+ + G L VHG R+ K + Sbjct: 139 WDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQK 198 Query: 713 RDPAKWDEIADVVSALSIPVI--ANGDVFEYEDFKRIKDATGATSVMAARGALWNASIFS 886 A W+ I + L + ANG++ ED R + GA +VM+A G L+N +F+ Sbjct: 199 TGLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFN 258
>O52539:DUSB_ERWCA tRNA-dihydrouridine synthase B - Erwinia carotovora| Length = 321 Score = 109 bits (273), Expect = 3e-23 Identities = 81/240 (33%), Positives = 115/240 (47%), Gaps = 2/240 (0%) Frame = +2 Query: 170 NKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTD 349 N+L+ APM PFR L GA +T E + + V R L E G Sbjct: 10 NRLIAAPMAGISDRPFRALCHAMGAGMTVSEMLSSNPEVW--RSDKSRLRMVHSDEPGIR 67 Query: 350 SVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSAL 529 +V C + +M + + A A+I IDINMGCP GSAL Sbjct: 68 AVQIAGCDPD------EMAAARRINADSGAQI-------IDINMGCPAKKVNRKMAGSAL 114 Query: 530 LSKPELIHDILTTLRRNLNTPVTCKIRL--LNTRQDTVELARRIEKCGVPALAVHGRKVK 703 L P+L+ IL+T+ + ++ PVT KIR ++ VE+A+ E CG+ AL +HGR Sbjct: 115 LQYPDLVKQILSTVVKAVDVPVTLKIRTGWAPEHRNCVEIAKLAEDCGIQALTIHGRTRA 174 Query: 704 DRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASIF 883 A++D I V A+SIP+IANGD+ + + + D TGA ++M R A IF Sbjct: 175 CLFNGFAEYDSIRAVKQAVSIPIIANGDITDPHKARAVLDYTGADALMIGRAAQGRPWIF 234
>O52533:DUSB_PROVU tRNA-dihydrouridine synthase B - Proteus vulgaris| Length = 323 Score = 107 bits (266), Expect = 2e-22 Identities = 82/242 (33%), Positives = 120/242 (49%), Gaps = 3/242 (1%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGT 346 +N L+ APM PFR L + GA +T E + + V + + +D E G Sbjct: 9 KNCLIAAPMAGVTDRPFRSLCYDMGAGMTVSEMLSSNPQVWQTDKSRLRMVHSD--ELGI 66 Query: 347 DSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAI-DINMGCPKAFSVSGGMGS 523 SV Q+ SD V AA+I + A I DINMGCP GS Sbjct: 67 RSV--------------QIAGSDPVDMAAAAKINADSGAQIIDINMGCPAKKVNKKLAGS 112 Query: 524 ALLSKPELIHDILTTLRRNLNTPVTCKIRL--LNTRQDTVELARRIEKCGVPALAVHGRK 697 ALL P+L+ +IL+ + ++ PVT KIR ++ VE+A+ E+CG+ AL +HGR Sbjct: 113 ALLRHPDLVAEILSAVVNAVDVPVTLKIRTGWSPDERNCVEIAKLAERCGIQALTIHGRT 172 Query: 698 VKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNAS 877 + + A++D I V +SIP+IANGD+ + + + D TGA ++M R A Sbjct: 173 RECLFKGEAEYDSIRTVKQNVSIPIIANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 Query: 878 IF 883 IF Sbjct: 233 IF 234
>Q96G46:DUS3L_HUMAN tRNA-dihydrouridine synthase 3-like - Homo sapiens (Human)| Length = 650 Score = 105 bits (263), Expect = 4e-22 Identities = 78/250 (31%), Positives = 116/250 (46%), Gaps = 7/250 (2%) Frame = +2 Query: 158 MDYRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLE 337 +D R KL LAP+ G LPFR + +GAD+T GE + C + + L+ Sbjct: 301 LDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAV------CTNLLQGQMSEWALLK 354 Query: 338 RGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCN--DVAAIDINMGCPKAFSVSG 511 R +F Q+ + K AE++ +V +DIN+GCP Sbjct: 355 RHQCEDIFGV----------QLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKK 404 Query: 512 GMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVELARR----IEKCGVPAL 679 G G AL+++ I+ + + L+ P+T KIR Q+ V LA R + GV + Sbjct: 405 GGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIR--TGVQERVNLAHRLLPELRDWGVALV 462 Query: 680 AVHGRKVKDRPRDPAKWDEIADVVSALS-IPVIANGDVFEYEDFKRIKDATGATSVMAAR 856 +HGR + R A W I + V A S +P+ NGD+ +ED R TG T +M AR Sbjct: 463 TLHGRSREQRYTKLADWQYIEECVQAASPMPLFGNGDILSFEDANRAMQ-TGVTGIMIAR 521 Query: 857 GALWNASIFS 886 GAL +F+ Sbjct: 522 GALLKPWLFT 531
>Q8CWL2:DUSB_VIBVU tRNA-dihydrouridine synthase B - Vibrio vulnificus| Length = 322 Score = 105 bits (262), Expect = 6e-22 Identities = 84/247 (34%), Positives = 116/247 (46%), Gaps = 8/247 (3%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFV-----HCQRVTNESLGTTDF 331 +NKL++APM PFR L YGA + E + + + QR+ +E Sbjct: 9 KNKLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPQLWKTSKSKQRMVHEG------ 62 Query: 332 LERGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEI-VCNDVAAIDINMGCPKAFSVS 508 E G SV Q+ SD AA+ V N IDINMGCP Sbjct: 63 -ESGIRSV--------------QIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVNK 107 Query: 509 GGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPALA 682 GSALL P++I IL + ++ PVT K R ++ + +A+ E CG+ ALA Sbjct: 108 KLAGSALLKYPDIIEQILKAVVDAVDVPVTLKTRTGWDTENKNCIHIAKLAEDCGIQALA 167 Query: 683 VHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGA 862 +HGR + A++D I V A+SIPVIANGD+ E K + + TGA ++M R A Sbjct: 168 LHGRTKACMYKGEAEYDSIKAVKQAVSIPVIANGDIDSPEKAKYVLEYTGADALMIGRPA 227 Query: 863 LWNASIF 883 IF Sbjct: 228 QGRPWIF 234
>P0A2R6:DUSB_SALTY tRNA-dihydrouridine synthase B - Salmonella typhimurium| Length = 321 Score = 105 bits (262), Expect = 6e-22 Identities = 83/242 (34%), Positives = 113/242 (46%), Gaps = 3/242 (1%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGT 346 RN+L+ APM PFR L E GA +T E + + V + + D E G Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD--EPGI 66 Query: 347 DSVVFRTCPQERDRVVFQMGTSDAVRALKAAEI-VCNDVAAIDINMGCPKAFSVSGGMGS 523 +V Q+ SD V AA I V + IDINMGCP GS Sbjct: 67 RTV--------------QIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAGS 112 Query: 524 ALLSKPELIHDILTTLRRNLNTPVTCKIRL--LNTRQDTVELARRIEKCGVPALAVHGRK 697 ALL P+L+ IL + ++ PVT KIR ++ VE+A+ E CG+ AL +HGR Sbjct: 113 ALLQYPDLVKSILIGVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRT 172 Query: 698 VKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNAS 877 A++D I V +SIP+IANGD+ + + D TGA ++M R A Sbjct: 173 RACLFNGEAEYDSIRAVKQKVSIPIIANGDITNPHKARAVLDYTGADALMIGRAAQGRPW 232 Query: 878 IF 883 IF Sbjct: 233 IF 234
>P0A2R7:DUSB_SALTI tRNA-dihydrouridine synthase B - Salmonella typhi| Length = 321 Score = 105 bits (262), Expect = 6e-22 Identities = 83/242 (34%), Positives = 113/242 (46%), Gaps = 3/242 (1%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGT 346 RN+L+ APM PFR L E GA +T E + + V + + D E G Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD--EPGI 66 Query: 347 DSVVFRTCPQERDRVVFQMGTSDAVRALKAAEI-VCNDVAAIDINMGCPKAFSVSGGMGS 523 +V Q+ SD V AA I V + IDINMGCP GS Sbjct: 67 RTV--------------QIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAGS 112 Query: 524 ALLSKPELIHDILTTLRRNLNTPVTCKIRL--LNTRQDTVELARRIEKCGVPALAVHGRK 697 ALL P+L+ IL + ++ PVT KIR ++ VE+A+ E CG+ AL +HGR Sbjct: 113 ALLQYPDLVKSILIGVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRT 172 Query: 698 VKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNAS 877 A++D I V +SIP+IANGD+ + + D TGA ++M R A Sbjct: 173 RACLFNGEAEYDSIRAVKQKVSIPIIANGDITNPHKARAVLDYTGADALMIGRAAQGRPW 232 Query: 878 IF 883 IF Sbjct: 233 IF 234
>Q9KV66:DUSB_VIBCH tRNA-dihydrouridine synthase B - Vibrio cholerae| Length = 322 Score = 105 bits (261), Expect = 7e-22 Identities = 79/241 (32%), Positives = 115/241 (47%), Gaps = 2/241 (0%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGT 346 +N L++APM PFR L YGA + E + C ++ + + + Sbjct: 9 KNNLIVAPMAGVTDRPFRELCLRYGAGMAVSE------MMSCNPALWKTAKSQNRMVHEG 62 Query: 347 DSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSA 526 +S + R V G+ + A A V N IDINMGCP GSA Sbjct: 63 ESGI---------RSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSA 113 Query: 527 LLSKPELIHDILTTLRRNLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPALAVHGRKV 700 LL P++I DIL + +N PVT K R ++ + +A+ E CG+ ALA+HGR Sbjct: 114 LLRYPDVIEDILKAVVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTR 173 Query: 701 KDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASI 880 + A++D I V +A+SIPVIANGD+ E + + + TGA ++M R A I Sbjct: 174 ACMYKGEAEYDSIKAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWI 233 Query: 881 F 883 F Sbjct: 234 F 234
>Q87KU1:DUSB_VIBPA tRNA-dihydrouridine synthase B - Vibrio parahaemolyticus| Length = 322 Score = 104 bits (260), Expect = 1e-21 Identities = 79/241 (32%), Positives = 112/241 (46%), Gaps = 2/241 (0%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGT 346 +N L++APM PFR L YGA + E + + ++ S + G Sbjct: 9 KNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANP-----KLWKTSKSKQRMVHEGE 63 Query: 347 DSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSA 526 + R V G+ + A A V N IDINMGCP GSA Sbjct: 64 SGI----------RSVQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVNKKLAGSA 113 Query: 527 LLSKPELIHDILTTLRRNLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPALAVHGRKV 700 LL P +I +IL + ++ PVT K R ++ V++A+ E CG+ ALA+HGR Sbjct: 114 LLQYPTIIEEILKAVVNAVDVPVTLKTRTGWDTDNKNCVQIAKLAEDCGIQALALHGRTK 173 Query: 701 KDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASI 880 + A++D I V A+SIPVIANGD+ E K + + TGA ++M R A I Sbjct: 174 ACMYKGEAEYDSIKAVKEAISIPVIANGDIDSPEKAKFVLEYTGADALMIGRPAQGRPWI 233 Query: 881 F 883 F Sbjct: 234 F 234
>P41504:DUS_RHILP Probable tRNA-dihydrouridine synthase - Rhizobium leguminosarum bv.| phaseoli Length = 317 Score = 103 bits (258), Expect = 2e-21 Identities = 80/258 (31%), Positives = 120/258 (46%), Gaps = 6/258 (2%) Frame = +2 Query: 158 MDYRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLE 337 M RN++VLAPM +PFR LA +GA + E + + V+ + L F Sbjct: 1 MSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLKAAGF-- 58 Query: 338 RGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVA-AIDINMGCPKAFSVSGG 514 R +V Q+ +A +AA+I + A IDINMGCP + G Sbjct: 59 --------------RPHMV-QLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGY 103 Query: 515 MGSALLSKPELIHDILTTLRRNLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPALAVH 688 GSAL+ P+ ++ + ++ PVT K+RL + ++ARR E G+ + +H Sbjct: 104 SGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEASGIQLVTIH 163 Query: 689 GRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGAL- 865 GR A WD I V +S+P+IANGDV D + I +GA +VM RG Sbjct: 164 GRTRMQFYEGRADWDAIRAVREVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQG 223 Query: 866 --WNASIFSPNGKVPWED 913 W+A + + + ED Sbjct: 224 RPWHAGVLAGAAEPRRED 241
>Q8PP72:DUSB_XANAC tRNA-dihydrouridine synthase B - Xanthomonas axonopodis pv. citri| Length = 332 Score = 103 bits (258), Expect = 2e-21 Identities = 82/241 (34%), Positives = 115/241 (47%), Gaps = 4/241 (1%) Frame = +2 Query: 173 KLVLAPMVRAGTLPFRLLAAEYGADITYGEEII-DHKFVHCQRVTNESLGTTDFLERGTD 349 K++LAPM PFRLL GA + E I D +F GT L R Sbjct: 11 KVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRF----------WGTRKSLHRMDH 60 Query: 350 SVVFRTCPQERDRVVFQMGTSDAVRALKAAEI-VCNDVAAIDINMGCPKAFSVSGGMGSA 526 + E D + Q+ ++ + +AA V + IDINMGCP + GSA Sbjct: 61 A-------GEPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSA 113 Query: 527 LLSKPELIHDILTTLRRNLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPALAVHGRKV 700 L+ EL+ ILT + + +N PVT KIR ++ +AR + CG+ ALAVHGR Sbjct: 114 LMRDEELVARILTAVVQAVNVPVTLKIRTGWDCDHRNGPTIARIAQDCGIAALAVHGRTR 173 Query: 701 KDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASI 880 A++ IA + +AL IPV+ANGD+ + ++ TGA +VM R A I Sbjct: 174 DQHYTGSAEYATIAQIKAALQIPVVANGDIDSPQKAAQVLRETGADAVMIGRAAQGRPWI 233 Query: 881 F 883 F Sbjct: 234 F 234
>O52536:DUSB_KLEPN tRNA-dihydrouridine synthase B - Klebsiella pneumoniae| Length = 321 Score = 103 bits (257), Expect = 2e-21 Identities = 81/241 (33%), Positives = 115/241 (47%), Gaps = 2/241 (0%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGT 346 RN+L+ APM PFR L E GA +T E + + V + + D E G Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVD--EPGI 66 Query: 347 DSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSA 526 +V Q V +M + + A+I IDINMGCP GSA Sbjct: 67 RTV------QIAGSVPKEMAAAARINVESGAQI-------IDINMGCPAKKVNRKLAGSA 113 Query: 527 LLSKPELIHDILTTLRRNLNTPVTCKIRL--LNTRQDTVELARRIEKCGVPALAVHGRKV 700 LL P+ + ILT + + ++ PVT KIR ++ VE+A+ E+CG+ AL +HGR Sbjct: 114 LLQYPDQVKSILTAVVKAVDVPVTLKIRTGWEPEHRNCVEIAQLAEECGIQALTIHGRTR 173 Query: 701 KDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASI 880 A++D I V +SIPVIANGD+ + + + D TGA ++M R A I Sbjct: 174 ACLFNGDAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI 233 Query: 881 F 883 F Sbjct: 234 F 234
>Q7VNP2:DUSB_HAEDU tRNA-dihydrouridine synthase B - Haemophilus ducreyi| Length = 320 Score = 103 bits (257), Expect = 2e-21 Identities = 77/245 (31%), Positives = 121/245 (49%), Gaps = 4/245 (1%) Frame = +2 Query: 161 DYRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFV-HCQRVTNESLGTTDFLE 337 + +++ LAPM PFR L ++ GA +T+ E + + V H ++ L E Sbjct: 7 EINSRIFLAPMAGITDQPFRRLCSQLGAGLTFSEMMSTNPDVWHTEK---SRLRLAHHAE 63 Query: 338 RGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEI-VCNDVAAIDINMGCPKAFSVSGG 514 G ++V Q+ S+ +AA+I V IDINMGCP Sbjct: 64 IGINAV--------------QIAGSEPTEIAEAAKINVAYGAQIIDINMGCPAKKVNKKM 109 Query: 515 MGSALLSKPELIHDILTTLRRNLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPALAVH 688 GSALL +P+L+ IL + ++ PVT KIR T ++ +++A+ EK G+ AL +H Sbjct: 110 AGSALLREPQLVARILDAVVNAVDVPVTLKIRTGWDKTHKNFLQIAKIAEKAGISALTIH 169 Query: 689 GRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALW 868 GR A+++ I V A+ +P+IANGD+ + K + D TGA +VM RG+ Sbjct: 170 GRTRDCLFNGQAEYESIKAVKQAVFMPIIANGDITSPQKAKDVLDYTGADAVMIGRGSFG 229 Query: 869 NASIF 883 +F Sbjct: 230 RPWLF 234
>Q28BT8:DUS3L_XENTR tRNA-dihydrouridine synthase 3-like - Xenopus tropicalis (Western| clawed frog) (Silurana tropicalis) Length = 639 Score = 103 bits (257), Expect = 2e-21 Identities = 77/250 (30%), Positives = 113/250 (45%), Gaps = 7/250 (2%) Frame = +2 Query: 158 MDYRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLE 337 +D+RNKL LAP+ G LPFR L +GADIT GE C + L+ Sbjct: 290 IDFRNKLYLAPLTTCGNLPFRRLCKRFGADITCGE------MAMCTNLLQGQPSEWALLK 343 Query: 338 RGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCN--DVAAIDINMGCPKAFSVSG 511 R +F Q+ + K AE++ DV +DIN+GCP Sbjct: 344 RHHSEDIFGV----------QLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKK 393 Query: 512 GMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVELARR----IEKCGVPAL 679 G G L+++ I+ + L+ P+T KIR Q+ + +A + + GV + Sbjct: 394 GGGCGLMNRTNKFEQIVKGMNSVLDVPLTVKIR--TGVQEKINIAHKLIPNLRDWGVSLV 451 Query: 680 AVHGRKVKDRPRDPAKWDEIADVVSALS-IPVIANGDVFEYEDFKRIKDATGATSVMAAR 856 +HGR + R A W+ IA S +P+ NGD+ YED R TG + +M AR Sbjct: 452 TLHGRSREQRYTKLADWEYIAQCADIASPLPLFGNGDIISYEDANRALQ-TGVSGIMLAR 510 Query: 857 GALWNASIFS 886 GAL +F+ Sbjct: 511 GALLKPWLFT 520
>Q9HUW1:DUSB_PSEAE tRNA-dihydrouridine synthase B - Pseudomonas aeruginosa| Length = 332 Score = 102 bits (254), Expect = 5e-21 Identities = 79/240 (32%), Positives = 110/240 (45%), Gaps = 2/240 (0%) Frame = +2 Query: 170 NKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTD 349 N+L+LAPM PFR L GA + E + R+ N + G D Sbjct: 13 NRLILAPMAGVTDRPFRQLCRRLGAGMVVSEMVTSDV-----RLWNSRKSRLRLIHDGED 67 Query: 350 SVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSAL 529 R V G A+ A A V IDINMGCP + GSAL Sbjct: 68 E----------PRSVQIAGGDPAMLAEAAQRNVELGAQIIDINMGCPAKKVCNKAAGSAL 117 Query: 530 LSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDT--VELARRIEKCGVPALAVHGRKVK 703 L L+ +IL + R ++ PVT KIR R + V +A+ E+ G+ ALAVHGR Sbjct: 118 LRDEALVAEILDAVVRAVDVPVTLKIRTGWDRDNRNGVTVAKLAEQAGIQALAVHGRTRA 177 Query: 704 DRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASIF 883 D A+++ IA + A+SIPV ANGD+ E +++ + TG +++ R A IF Sbjct: 178 DLYTGEAEYETIAAIKQAVSIPVFANGDIDSPEKARKVIEQTGVDALLIGRAAQGRPWIF 237
>P0ABT5:DUSB_ECOLI tRNA-dihydrouridine synthase B - Escherichia coli| Length = 321 Score = 102 bits (254), Expect = 5e-21 Identities = 82/242 (33%), Positives = 111/242 (45%), Gaps = 3/242 (1%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGT 346 RN+L+ APM PFR L E GA +T E + + V L E G Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQV--WESDKSRLRMVHIDEPGI 66 Query: 347 DSVVFRTCPQERDRVVFQMGTSDAVRALKAAEI-VCNDVAAIDINMGCPKAFSVSGGMGS 523 +V Q+ SD AA I V + IDINMGCP GS Sbjct: 67 RTV--------------QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGS 112 Query: 524 ALLSKPELIHDILTTLRRNLNTPVTCKIRL--LNTRQDTVELARRIEKCGVPALAVHGRK 697 ALL P+++ ILT + ++ PVT KIR ++ E+A+ E CG+ AL +HGR Sbjct: 113 ALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRT 172 Query: 698 VKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNAS 877 A++D I V +SIPVIANGD+ + + + D TGA ++M R A Sbjct: 173 RACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 Query: 878 IF 883 IF Sbjct: 233 IF 234
>P0ABT6:DUSB_ECOL6 tRNA-dihydrouridine synthase B - Escherichia coli O6| Length = 321 Score = 102 bits (254), Expect = 5e-21 Identities = 82/242 (33%), Positives = 111/242 (45%), Gaps = 3/242 (1%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGT 346 RN+L+ APM PFR L E GA +T E + + V L E G Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQV--WESDKSRLRMVHIDEPGI 66 Query: 347 DSVVFRTCPQERDRVVFQMGTSDAVRALKAAEI-VCNDVAAIDINMGCPKAFSVSGGMGS 523 +V Q+ SD AA I V + IDINMGCP GS Sbjct: 67 RTV--------------QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGS 112 Query: 524 ALLSKPELIHDILTTLRRNLNTPVTCKIRL--LNTRQDTVELARRIEKCGVPALAVHGRK 697 ALL P+++ ILT + ++ PVT KIR ++ E+A+ E CG+ AL +HGR Sbjct: 113 ALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRT 172 Query: 698 VKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNAS 877 A++D I V +SIPVIANGD+ + + + D TGA ++M R A Sbjct: 173 RACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 Query: 878 IF 883 IF Sbjct: 233 IF 234
>P0ABT7:DUSB_ECO57 tRNA-dihydrouridine synthase B - Escherichia coli O157:H7| Length = 321 Score = 102 bits (254), Expect = 5e-21 Identities = 82/242 (33%), Positives = 111/242 (45%), Gaps = 3/242 (1%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGT 346 RN+L+ APM PFR L E GA +T E + + V L E G Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQV--WESDKSRLRMVHIDEPGI 66 Query: 347 DSVVFRTCPQERDRVVFQMGTSDAVRALKAAEI-VCNDVAAIDINMGCPKAFSVSGGMGS 523 +V Q+ SD AA I V + IDINMGCP GS Sbjct: 67 RTV--------------QIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGS 112 Query: 524 ALLSKPELIHDILTTLRRNLNTPVTCKIRL--LNTRQDTVELARRIEKCGVPALAVHGRK 697 ALL P+++ ILT + ++ PVT KIR ++ E+A+ E CG+ AL +HGR Sbjct: 113 ALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRT 172 Query: 698 VKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNAS 877 A++D I V +SIPVIANGD+ + + + D TGA ++M R A Sbjct: 173 RACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 Query: 878 IF 883 IF Sbjct: 233 IF 234
>Q8EJR8:DUSB_SHEON tRNA-dihydrouridine synthase B - Shewanella oneidensis| Length = 322 Score = 101 bits (252), Expect = 8e-21 Identities = 79/241 (32%), Positives = 113/241 (46%), Gaps = 2/241 (0%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGT 346 +N+L++APM FR L YGA + E + + E T +R T Sbjct: 9 KNQLIVAPMAGVTDQAFRNLCLRYGAALAVSEMLSSNP---------EVWDTDKSRQRMT 59 Query: 347 DSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSA 526 S +E R V G + A A V IDINMGCP GSA Sbjct: 60 HS------GEEGIRSVQIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSA 113 Query: 527 LLSKPELIHDILTTLRRNLNTPVTCKIRL--LNTRQDTVELARRIEKCGVPALAVHGRKV 700 L+ P L+ DIL + ++ PVT KIR ++ V++A+ E CG+ +LAVHGR Sbjct: 114 LMQNPPLVKDILQAVVAAVDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTR 173 Query: 701 KDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASI 880 + + A++D I + +SIPV+ANGD+ E + + D TG ++M RGA I Sbjct: 174 QCMYKGNAEYDTIKAIKQNVSIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPWI 233 Query: 881 F 883 F Sbjct: 234 F 234
>P37567:DUS1_BACSU Probable tRNA-dihydrouridine synthase 1 - Bacillus subtilis| Length = 333 Score = 101 bits (252), Expect = 8e-21 Identities = 75/240 (31%), Positives = 118/240 (49%), Gaps = 5/240 (2%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGT 346 +N++VLAPM FRL E+GA + E + D ++ T L +++ Sbjct: 10 KNRVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILYNNARTMGML----YIDERE 65 Query: 347 DSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAA--IDINMGCPKAFSVSGGMG 520 + + +++ +V +AA+ V + A IDINMGCP G Sbjct: 66 KPLSLQIFGGKKETLV------------EAAKFVDQNTTADIIDINMGCPVPKITKCDAG 113 Query: 521 SALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQD---TVELARRIEKCGVPALAVHG 691 + L P+ I+++++ + +N PVT K+R+ +D V+ A+ +E+ G A+A+HG Sbjct: 114 AKWLLDPDKIYEMVSAVVDAVNKPVTVKMRM-GWDEDHIFAVKNAQAVERAGGKAVALHG 172 Query: 692 RKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWN 871 R A WD I +V ++SIPVI NGDV +D KR+ D TG VM R AL N Sbjct: 173 RTRVQMYEGTANWDIIKEVKQSVSIPVIGNGDVKTPQDAKRMLDETGVDGVMIGRAALGN 232
>Q87VS1:DUSB_PSESM tRNA-dihydrouridine synthase B - Pseudomonas syringae pv. tomato| Length = 337 Score = 101 bits (251), Expect = 1e-20 Identities = 80/241 (33%), Positives = 110/241 (45%), Gaps = 3/241 (1%) Frame = +2 Query: 170 NKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTD 349 N L+LAPM PFR L + GA + E + + N + G Sbjct: 13 NGLILAPMAGVTDQPFRQLCRQLGAGLVVSEMVTSD-----MSLWNSRKSRLRMIHAGD- 66 Query: 350 SVVFRTCPQERDRVVFQMGTSDAVRALKAAEI-VCNDVAAIDINMGCPKAFSVSGGMGSA 526 P+ R Q+ DA AA V IDINMGCP + GSA Sbjct: 67 -------PEPRS---VQIAGGDAQMMADAARANVELGAQIIDINMGCPAKKVCNKAAGSA 116 Query: 527 LLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDT--VELARRIEKCGVPALAVHGRKV 700 LL +L++DIL + ++ PVT KIR R + + +A+ E+ G+ ALAVHGR Sbjct: 117 LLKDEQLVNDILQAVVAAVDVPVTLKIRTGWDRDNRNGLTVAKIAEQAGIQALAVHGRTR 176 Query: 701 KDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASI 880 D A++D IA + A+SIPV ANGD+ E + + ATGA ++ R A I Sbjct: 177 ADLYTGEAEYDTIAMIKQAVSIPVFANGDIDSPEKARHVLQATGADGLLIGRAAQGRPWI 236 Query: 881 F 883 F Sbjct: 237 F 237
>Q7ZWS1:DUS3L_XENLA tRNA-dihydrouridine synthase 3-like - Xenopus laevis (African| clawed frog) Length = 640 Score = 101 bits (251), Expect = 1e-20 Identities = 77/250 (30%), Positives = 111/250 (44%), Gaps = 7/250 (2%) Frame = +2 Query: 158 MDYRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLE 337 +D+RNKL LAP+ G LPFR + GADIT GE C + L+ Sbjct: 291 IDFRNKLYLAPLTTCGNLPFRRICKRLGADITCGE------MAMCTNLLQGQPSEWALLK 344 Query: 338 RGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCN--DVAAIDINMGCPKAFSVSG 511 R +F Q+ + K AE++ DV +DIN+GCP Sbjct: 345 RHHSEDIFGV----------QLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKK 394 Query: 512 GMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVELARR----IEKCGVPAL 679 G G L+++ I+ + L+ P+T KIR Q+ V +A + + GV + Sbjct: 395 GGGCGLMNRTNKFEQIVKGMNSVLDVPLTVKIR--TGVQEKVNIAHKLIPNLRDWGVSLV 452 Query: 680 AVHGRKVKDRPRDPAKWDEIADVVSALS-IPVIANGDVFEYEDFKRIKDATGATSVMAAR 856 +HGR + R A W+ I S +P+ NGD+ YED R TG VM AR Sbjct: 453 TLHGRSREQRYTKLANWEYIDQCAKIASPVPLFGNGDIISYEDANRALQ-TGVAGVMLAR 511 Query: 857 GALWNASIFS 886 GAL+ +F+ Sbjct: 512 GALFKPWLFT 521
>Q83PZ5:DUSB_SHIFL tRNA-dihydrouridine synthase B - Shigella flexneri| Length = 321 Score = 100 bits (250), Expect = 1e-20 Identities = 80/242 (33%), Positives = 113/242 (46%), Gaps = 3/242 (1%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGT 346 RN+L+ APM PFR L E GA +T E + + V L E G Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVW--ESDKSRLRMVHIDEPGI 66 Query: 347 DSV-VFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGS 523 +V + + P+E M + + A+I IDINMGCP GS Sbjct: 67 RTVQIAGSAPKE-------MADAARINVESGAQI-------IDINMGCPAKKVNRKLAGS 112 Query: 524 ALLSKPELIHDILTTLRRNLNTPVTCKIRL--LNTRQDTVELARRIEKCGVPALAVHGRK 697 ALL P+++ ILT + ++ PVT KIR ++ E+A+ E CG+ AL +HGR Sbjct: 113 ALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRT 172 Query: 698 VKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNAS 877 A++D I V +SIPVIANGD+ + + + D TGA ++M R A Sbjct: 173 RACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 Query: 878 IF 883 IF Sbjct: 233 IF 234
>Q8ZAX7:DUSB_YERPE tRNA-dihydrouridine synthase B - Yersinia pestis| Length = 321 Score = 100 bits (249), Expect = 2e-20 Identities = 79/241 (32%), Positives = 109/241 (45%), Gaps = 3/241 (1%) Frame = +2 Query: 170 NKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTD 349 N L+ APM PFR L GA + E + + V R L E G Sbjct: 10 NCLIAAPMAGITDRPFRALCHGMGAGMAVSEMLSSNPEVW--RTDKSRLRMVHVDEPGIR 67 Query: 350 SVVFRTCPQERDRVVFQMGTSDAVRALKAAEI-VCNDVAAIDINMGCPKAFSVSGGMGSA 526 +V Q+ +D AA I V + IDINMGCP GSA Sbjct: 68 NV--------------QIAGNDPDEMAAAARINVASGAQIIDINMGCPAKKVNRKLAGSA 113 Query: 527 LLSKPELIHDILTTLRRNLNTPVTCKIRL--LNTRQDTVELARRIEKCGVPALAVHGRKV 700 LL P+L+ IL+ + ++ PVT KIR ++ +E+A+ E CG+ AL +HGR Sbjct: 114 LLQHPDLVKQILSAVVNAVDVPVTLKIRTGWSPEHRNCIEIAQLAENCGIQALTIHGRTR 173 Query: 701 KDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASI 880 A++D I V +SIPVIANGD+ + + + D TGA ++M R A I Sbjct: 174 SCLFNGEAEYDSIRAVKQTVSIPVIANGDITDPHKARAVLDYTGADALMIGRAAQGRPWI 233 Query: 881 F 883 F Sbjct: 234 F 234
>Q08111:DUS_RHOCA Probable tRNA-dihydrouridine synthase - Rhodobacter capsulatus| (Rhodopseudomonas capsulata) Length = 324 Score = 100 bits (248), Expect = 2e-20 Identities = 75/233 (32%), Positives = 114/233 (48%), Gaps = 4/233 (1%) Frame = +2 Query: 176 LVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTDSV 355 ++LAPM LPFR + A +GA + E + + E L + + Sbjct: 14 VLLAPMAGITDLPFRRMVARFGAGLVVSEMV----------ASGEMLTAKPSVRAKAQAE 63 Query: 356 VFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAI-DINMGCPKAFSVSGGM-GSAL 529 + P Q+ +A +AA+IV + A I DINMGCP A V+GG+ G+AL Sbjct: 64 LTAGLPTS-----VQLAGREAAPMAEAAKIVADMGAEIIDINMGCP-AKKVTGGLSGAAL 117 Query: 530 LSKPELIHDILTTLRRNLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPALAVHGRKVK 703 + P+ ++ + ++ PVT K+RL + + E+A R E GV + +HGR Sbjct: 118 MRNPDHALRLIEAVVGAVDLPVTLKMRLGWDEDQLNAAEIAARAEAAGVKMIVIHGRTRM 177 Query: 704 DRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGA 862 A W IA V +A+S+PV+ANGD+ + +R D +GA VM RGA Sbjct: 178 QFYTGAADWRAIAAVRAAVSVPVVANGDITDAASARRALDQSGAAGVMVGRGA 230
>Q8PCH1:DUSB_XANCP tRNA-dihydrouridine synthase B - Xanthomonas campestris pv.| campestris Length = 332 Score = 99.4 bits (246), Expect = 4e-20 Identities = 80/241 (33%), Positives = 114/241 (47%), Gaps = 4/241 (1%) Frame = +2 Query: 173 KLVLAPMVRAGTLPFRLLAAEYGADITYGEEII-DHKFVHCQRVTNESLGTTDFLERGTD 349 K++LAPM PFRLL GA + E I D +F GT L R Sbjct: 11 KVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRF----------WGTRKSLHRMDH 60 Query: 350 SVVFRTCPQERDRVVFQMGTSDAVRALKAAEI-VCNDVAAIDINMGCPKAFSVSGGMGSA 526 + E D + Q+ ++ + +AA V + IDINMGCP + GSA Sbjct: 61 A-------GEPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSA 113 Query: 527 LLSKPELIHDILTTLRRNLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPALAVHGRKV 700 L+ +L+ IL+ + R ++ PVT KIR ++ +AR + CG+ ALAVHGR Sbjct: 114 LMRDEDLVARILSAVVRAVDVPVTLKIRTGWDCDHRNGPTIARIAQDCGIAALAVHGRTR 173 Query: 701 KDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASI 880 A++ IA + +AL IPVIANGD+ + ++ TG +VM R A I Sbjct: 174 DQHYTGTAEYATIAQIKAALQIPVIANGDIDSPQKAAQVLRDTGVDAVMIGRAAQGRPWI 233 Query: 881 F 883 F Sbjct: 234 F 234
>O52532:DUSB_SERMA tRNA-dihydrouridine synthase B - Serratia marcescens| Length = 334 Score = 99.0 bits (245), Expect = 5e-20 Identities = 77/240 (32%), Positives = 108/240 (45%), Gaps = 2/240 (0%) Frame = +2 Query: 170 NKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTD 349 N L+ APM PFR L GA + E + + V R L E G Sbjct: 10 NCLIAAPMAGITDRPFRTLCHAMGAGMAVSEMLSSNPEVW--RTDKSRLRMVHSDEPGIR 67 Query: 350 SVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSAL 529 SV C + M + + A++ IDINMGCP GSAL Sbjct: 68 SVQIAGCDPD------DMAAAARINVASGAQL-------IDINMGCPAKKVNRKLAGSAL 114 Query: 530 LSKPELIHDILTTLRRNLNTPVTCKIRL--LNTRQDTVELARRIEKCGVPALAVHGRKVK 703 L P+L+ IL + ++ PVT KIR ++ VE+A+ E CG+ AL +HGR Sbjct: 115 LQYPDLVKRILHAVVDAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRA 174 Query: 704 DRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASIF 883 A++D I V ++SIP+IANGD+ + + + D TGA ++M R A IF Sbjct: 175 CLFNGDAEYDSIRAVKQSVSIPIIANGDITDPHKARAVLDYTGADALMIGRAAQGRPWIF 234
>Q88DK5:DUSB_PSEPK tRNA-dihydrouridine synthase B - Pseudomonas putida (strain KT2440)| Length = 337 Score = 96.7 bits (239), Expect = 3e-19 Identities = 78/242 (32%), Positives = 111/242 (45%), Gaps = 3/242 (1%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGT 346 RN L+LAPM PFR L GA + E + + R ++ L R Sbjct: 12 RNNLILAPMAGVTDQPFRTLCQRLGAGMVVSEMVSSDMSLWNSRKSS--------LRR-- 61 Query: 347 DSVVFRTCPQERDRVVFQMGTSDAVRALKAAEI-VCNDVAAIDINMGCPKAFSVSGGMGS 523 + P+ R Q+ DA AA+ V IDINMGCP + GS Sbjct: 62 ---IHEGDPEPRS---VQIAGGDAQMMAAAAKANVEAGAQIIDINMGCPAKKVCNKAAGS 115 Query: 524 ALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTR--QDTVELARRIEKCGVPALAVHGRK 697 ALL L+ +IL + ++ PVT KIR R ++ + +A+ E+ G+ ALAVHGR Sbjct: 116 ALLRDEALVSEILHAVVSAVDVPVTLKIRTGWDRANKNGLNVAKIAEQAGIQALAVHGRT 175 Query: 698 VKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNAS 877 D A++D I + A+SIPV ANGD+ E + + + TG ++ R A Sbjct: 176 RADLYTGEAEYDTIGAIKQAVSIPVFANGDITSPEKARAVLETTGVDGLLIGRAAQGRPW 235 Query: 878 IF 883 IF Sbjct: 236 IF 237
>Q55724:DUS1_SYNY3 Probable tRNA-dihydrouridine synthase 1 - Synechocystis sp. (strain| PCC 6803) Length = 355 Score = 95.5 bits (236), Expect = 6e-19 Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 2/234 (0%) Frame = +2 Query: 170 NKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTD 349 ++++ +P+ L FR L Y E++ +H R + Sbjct: 42 SRVLQSPLSGVTDLVFRRLVRRYAPQAMLYTEMVSATEIHHLRTLPQ------------- 88 Query: 350 SVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSAL 529 V P+E + A A + V ++DINMGCP G GS+L Sbjct: 89 --VMEIDPRENPISIQLFDCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGGGSSL 146 Query: 530 LSKPELIHDILTTLRRNLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPALAVHGRKVK 703 L +P + I+ T+ ++ PVT K RL + + VE A+R++ G L +HGR Sbjct: 147 LRQPAVAEAIVKTVVAAVDVPVTVKTRLGWDDGEINIVEFAQRLQDAGAQMLTLHGRTRA 206 Query: 704 DRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGAL 865 A+W IA V AL+IPVIANGD+F E + TGA VM +RG+L Sbjct: 207 QGYNGRARWQWIAKVKQALTIPVIANGDIFSVEAAIACLEETGADGVMCSRGSL 260
>P45672:DUS_AZOBR Probable tRNA-dihydrouridine synthase - Azospirillum brasilense| Length = 328 Score = 94.4 bits (233), Expect = 1e-18 Identities = 73/232 (31%), Positives = 107/232 (46%), Gaps = 3/232 (1%) Frame = +2 Query: 176 LVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTDSV 355 ++LAPM LPFR L + G + E V Q + E+ T +E Sbjct: 14 VILAPMSGVTDLPFRRLVKQSGCGLVVSE------MVASQAMIRENRQTLRMVE------ 61 Query: 356 VFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAI-DINMGCPKAFSVSGGMGSALL 532 C E+ + Q+ + +AA++ + AAI DIN GCP V+G GS+L+ Sbjct: 62 ----CEPEQFPMAVQLAGCEPDVMAEAAKLNEDRGAAIIDINFGCPVKKVVNGHAGSSLM 117 Query: 533 SKPELIHDILTTLRRNLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPALAVHGRKVKD 706 L IL + + PVT K+R ++ + LAR E+CG+ + VHGR + Sbjct: 118 RDEALAARILEATAKAVTIPVTLKMRKGWDDSSLNAPRLARIAEECGIKLVTVHGRTREQ 177 Query: 707 RPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGA 862 A W I V A+SIPV+ NGD+ ++ R +GA VM RGA Sbjct: 178 FYNGTADWSFIRSVKEAVSIPVVVNGDITSFDAVDRALAESGADGVMIGRGA 229
>Q8ZGV2:DUSC_YERPE tRNA-dihydrouridine synthase C - Yersinia pestis| Length = 312 Score = 94.0 bits (232), Expect = 2e-18 Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 18/207 (8%) Frame = +2 Query: 299 VTNESLGTTDFLERGTDSVV-----FRTCPQERDRVVFQMGTSDAVRAL---------KA 436 V + L T+FL R D ++ +R CP+ ++ Q GT ++ L A Sbjct: 23 VNDYDLCITEFL-RVVDQLLPAKSFYRLCPELHNQSRTQSGTLVRIQLLGQYPEWLAENA 81 Query: 437 AEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNL--NTPVTCKIR 610 A V +D+N GCP G G+ LL PELI+ +R + + PVT KIR Sbjct: 82 ARAVALGSYGVDLNCGCPSKLVNGSGGGATLLKDPELIYQGAKAMRAAVPAHLPVTVKIR 141 Query: 611 L-LNTRQDTVELARRIEKCGVPALAVHGRKVKDRPR-DPAKWDEIADVVSALSIPVIANG 784 L ++ E+A +++ G LAVHGR +D + + W I ++ L+IPVIANG Sbjct: 142 LGWDSGDRQFEIADAVQQAGATELAVHGRTKEDGYQAERINWQAIGEIRQRLTIPVIANG 201 Query: 785 DVFEYEDFKRIKDATGATSVMAARGAL 865 ++++Y+ + TG +VM RGAL Sbjct: 202 EIWDYQSAQECMKVTGCDAVMLGRGAL 228
>P44606:DUSC_HAEIN tRNA-dihydrouridine synthase C - Haemophilus influenzae| Length = 310 Score = 93.2 bits (230), Expect = 3e-18 Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 17/209 (8%) Frame = +2 Query: 347 DSVVFRTCPQERDRVVFQMGTSDAVRAL---------KAAEIVCNDVAAIDINMGCPKAF 499 + V +R CP+ +++ GT V+ L A + ID+N GCP Sbjct: 43 EKVFYRLCPELKNQGFTSSGTPVRVQLLGQHPKCLAENAIRAIDLGSHGIDLNCGCPSKT 102 Query: 500 SVSGGMGSALLSKPELIHDILTTLRRNLNT--PVTCKIRL-LNTRQDTVELARRIEKCGV 670 G+ALL +PELI+ LRR + + PV+ K+RL + E+A +E+ G Sbjct: 103 VNGSNGGAALLKQPELIYRATQALRRAVPSEFPVSVKVRLGWDDISQAFEIADAVEQGGA 162 Query: 671 PALAVHGRKVKDRPR-DPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVM 847 + VHGR D R D W +I++V LSIPVIANG+++ ++D + TG +M Sbjct: 163 TEITVHGRTKADGYRADRINWKKISEVRERLSIPVIANGEIWHWQDGQDCLSQTGCQDLM 222 Query: 848 AARGAL----WNASIFSPNGKVPWEDFKR 922 RGAL + + S K+PW + ++ Sbjct: 223 VGRGALNIPNLSHVLKSNAEKMPWYEIQK 251
>Q3KRC5:DUS3L_RAT tRNA-dihydrouridine synthase 3-like - Rattus norvegicus (Rat)| Length = 640 Score = 93.2 bits (230), Expect = 3e-18 Identities = 73/250 (29%), Positives = 108/250 (43%), Gaps = 7/250 (2%) Frame = +2 Query: 158 MDYRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLE 337 +D KL LAP+ G LPFR + +GAD+T GE C + + L+ Sbjct: 291 LDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGE------MAMCTNLLQGQMSEWALLK 344 Query: 338 RGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCN--DVAAIDINMGCPKAFSVSG 511 R +F Q+ + K AE++ DV +DIN+GCP Sbjct: 345 RHPCEDIFGV----------QLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKK 394 Query: 512 GMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVELARR----IEKCGVPAL 679 G G AL+++ I+ + L+ P+T K+R Q+ V LA R + GV + Sbjct: 395 GGGCALMNRSAKFQQIVRGMNEVLDVPLTVKMR--TGVQERVSLAHRLLPELRNWGVALV 452 Query: 680 AVHGRKVKDRPRDPAKWDEIADVVSALS-IPVIANGDVFEYEDFKRIKDATGATSVMAAR 856 +HGR + R A W I S +P+ NGD+ +ED TG +M AR Sbjct: 453 TLHGRSREQRYTRLADWPYIEQCAKVASPMPLFGNGDILSFED-ANCAMQTGVAGIMVAR 511 Query: 857 GALWNASIFS 886 GAL +F+ Sbjct: 512 GALLKPWLFT 521
>Q8EFG7:DUSC_SHEON tRNA-dihydrouridine synthase C - Shewanella oneidensis| Length = 315 Score = 92.8 bits (229), Expect = 4e-18 Identities = 57/153 (37%), Positives = 80/153 (52%), Gaps = 3/153 (1%) Frame = +2 Query: 416 AVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNT-- 589 A A++A E+ + V D N GCP G+ LL P IHDI+ +R+ + Sbjct: 78 AENAMRAIELGSHGV---DANFGCPAKMVNRSNGGAVLLQYPNTIHDIVRAMRQAVPAEH 134 Query: 590 PVTCKIRL-LNTRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSI 766 PVT KIRL + +E A + + G LA+H R D + PA W+ I +V L I Sbjct: 135 PVTAKIRLGYEDKSLFMENALAVYEAGATELAIHARSKVDGYKPPAYWEYITEVRERLPI 194 Query: 767 PVIANGDVFEYEDFKRIKDATGATSVMAARGAL 865 PVIANG+++ +D KR TG S+M RGA+ Sbjct: 195 PVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAI 227
>Q884C6:DUSC_PSESM tRNA-dihydrouridine synthase C - Pseudomonas syringae pv. tomato| Length = 317 Score = 92.4 bits (228), Expect = 5e-18 Identities = 56/159 (35%), Positives = 88/159 (55%), Gaps = 5/159 (3%) Frame = +2 Query: 398 QMGTSDAVRALKAAEIVCN-DVAAIDINMGCP-KAFSVSGGMGSALLSKPELIHDILTTL 571 Q+ SD V + A C +D+N GCP K + S G G+ LL +PEL+H I++ + Sbjct: 68 QLLGSDPVCLAENAAFACELGAPVLDLNFGCPAKTVNRSRG-GAILLKEPELLHTIVSQV 126 Query: 572 RRNL--NTPVTCKIRLLNTRQD-TVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIA 742 RR + + PVT K+RL D ++ AR + G + VH R D + PA W+ IA Sbjct: 127 RRAVPKDIPVTAKMRLGYENTDGALDCARALADGGAAQIVVHARTKVDGYKPPAHWEWIA 186 Query: 743 DVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARG 859 + + +PV+ANG+++ ED++R ++ GA +M RG Sbjct: 187 RIQEVVKVPVVANGEIWTVEDWRRCREICGARDIMIGRG 225
>Q91XI1:DUS3L_MOUSE tRNA-dihydrouridine synthase 3-like - Mus musculus (Mouse)| Length = 637 Score = 92.4 bits (228), Expect = 5e-18 Identities = 73/250 (29%), Positives = 109/250 (43%), Gaps = 7/250 (2%) Frame = +2 Query: 158 MDYRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLE 337 +D KL LAP+ G LPFR + +GAD+T GE + C + + L+ Sbjct: 288 LDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAV------CTNLLQGQMSEWALLK 341 Query: 338 RGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCN--DVAAIDINMGCPKAFSVSG 511 R +F Q+ + K AE++ DV +DIN+GCP Sbjct: 342 RHPCEDIFGV----------QLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKK 391 Query: 512 GMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVELARR----IEKCGVPAL 679 G G AL+++ I+ + L+ P+T K+R Q+ V LA R + GV + Sbjct: 392 GGGCALMNRSAKFQQIVRGVNGVLDVPLTVKMR--TGVQERVSLAHRLLPELRDWGVALV 449 Query: 680 AVHGRKVKDRPRDPAKWDEIADVVSALS-IPVIANGDVFEYEDFKRIKDATGATSVMAAR 856 +HGR + R A W I S +P+ NGD+ +ED TG +M AR Sbjct: 450 TLHGRSREQRYTRLADWPYIEQCAKVASPMPLFGNGDILSFED-ANCAMQTGVAGIMVAR 508 Query: 857 GALWNASIFS 886 GAL +F+ Sbjct: 509 GALLKPWLFT 518
>Q88LF2:DUSC_PSEPK tRNA-dihydrouridine synthase C - Pseudomonas putida (strain KT2440)| Length = 323 Score = 92.0 bits (227), Expect = 7e-18 Identities = 56/159 (35%), Positives = 89/159 (55%), Gaps = 5/159 (3%) Frame = +2 Query: 398 QMGTSDAVRALKAAEIVCN-DVAAIDINMGCP-KAFSVSGGMGSALLSKPELIHDILTTL 571 Q+ SD V + A + C ID+N GCP K + S G G+ LL +PEL+H I+ + Sbjct: 68 QLLGSDPVCLAENAALACELGAPVIDLNFGCPAKTVNKSRG-GAVLLKEPELLHAIVREV 126 Query: 572 RRNL--NTPVTCKIRL-LNTRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIA 742 RR + N PVT K+RL ++ +E A + + G L VH R + + PA W+ +A Sbjct: 127 RRAVPANIPVTSKMRLGFDSPDGALECATALAEGGSAHLVVHARTKVEGYKPPAHWEWVA 186 Query: 743 DVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARG 859 V + +PV ANG+++ +D++R ++ +GA +M RG Sbjct: 187 RVQDVVKVPVFANGEIWTVDDWRRCREVSGAEDIMLGRG 225
>Q8XYX1:DUSC_RALSO tRNA-dihydrouridine synthase C - Ralstonia solanacearum| (Pseudomonas solanacearum) Length = 326 Score = 90.9 bits (224), Expect = 1e-17 Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%) Frame = +2 Query: 389 VVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILTT 568 V+ +G+ A AA+ ID+N GCP G G+ LL+ PEL+H I++T Sbjct: 67 VIQLLGSDPEWLARNAAQAATVSPHGIDLNFGCPAKVVNRHGGGAMLLATPELLHRIVST 126 Query: 569 LRRNL--NTPVTCKIRL-LNTRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEI 739 +R + VT K+RL ++ + A + + G +L VH R R PA WD I Sbjct: 127 VRAAVPARIAVTAKMRLGVSDTSLAIACATALAEGGAASLVVHARTRDHGYRPPAHWDWI 186 Query: 740 ADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGAL 865 A + A+ +PV+ANG+V+ +D+ R + +G VM RGA+ Sbjct: 187 ARIADAVRVPVVANGEVWTVDDWARCRAVSGCDDVMIGRGAV 228
>Q9HZ95:DUSC_PSEAE tRNA-dihydrouridine synthase C - Pseudomonas aeruginosa| Length = 319 Score = 90.9 bits (224), Expect = 1e-17 Identities = 66/201 (32%), Positives = 101/201 (50%), Gaps = 13/201 (6%) Frame = +2 Query: 296 RVTNESLGTTDFLERGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAA--- 466 R+T+ L T F + P+ RD + GT V+ L + D AA Sbjct: 35 RITDRLLPATAF---------HKLAPELRDGSRTRAGTPMRVQLLGSDPACLADNAAFAC 85 Query: 467 ------IDINMGCP-KAFSVSGGMGSALLSKPELIHDILTTLRRNLNTP--VTCKIRL-L 616 ID+N GCP K + S G G+ LL +PEL+HDI+ +RR + + VT K+RL Sbjct: 86 ELGAPVIDLNFGCPAKTVNRSRG-GAVLLKEPELMHDIVAAVRRAVPSEIAVTSKMRLGY 144 Query: 617 NTRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFE 796 ++ ++ AR + G + VH R D R PA W+ +A V A+ +PV ANG+V+ Sbjct: 145 DSPDGALDCARALADGGSAHVVVHARTKVDGYRPPAHWEWVARVAEAVRVPVFANGEVWT 204 Query: 797 YEDFKRIKDATGATSVMAARG 859 +D+ R ++ +G +M RG Sbjct: 205 LDDYLRCREVSGVEDIMLGRG 225
>Q9JUP6:DUSC_NEIMA tRNA-dihydrouridine synthase C - Neisseria meningitidis serogroup A| Length = 333 Score = 90.9 bits (224), Expect = 1e-17 Identities = 59/158 (37%), Positives = 80/158 (50%), Gaps = 3/158 (1%) Frame = +2 Query: 401 MGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRN 580 +G+ A A E V ID+N GCP G+ LL +PELI I+ TLR Sbjct: 82 LGSDADNMAANALEAVRFGADKIDLNFGCPAPTVNRHKGGAILLKEPELIFHIVKTLRER 141 Query: 581 L--NTPVTCKIRL-LNTRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVV 751 L + P+T K+RL + +E A I + G L VH R + PA W+ I + Sbjct: 142 LPAHIPLTAKMRLGYEDKSPALECACAIAEGGACGLTVHARTKAEGYEPPAHWEWIRKIR 201 Query: 752 SALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGAL 865 ++ IPV ANGDVF +D+ IK +G SVM RGA+ Sbjct: 202 DSVDIPVTANGDVFSLQDYIGIKTISGCNSVMLGRGAV 239
>Q87N01:DUSC_VIBPA tRNA-dihydrouridine synthase C - Vibrio parahaemolyticus| Length = 322 Score = 90.5 bits (223), Expect = 2e-17 Identities = 57/153 (37%), Positives = 79/153 (51%), Gaps = 4/153 (2%) Frame = +2 Query: 416 AVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNL--NT 589 A A++AAE+ ID+N GCP G+ALL PELIH ++ R + N Sbjct: 78 AENAIRAAEL---GARGIDLNFGCPAKMVNKSKGGAALLQHPELIHSVVKACRDAVPANI 134 Query: 590 PVTCKIRL-LNTRQDTVELARRIEKCGVPALAVHGR-KVKDRPRDPAKWDEIADVVSALS 763 PV+ KIRL +D E+ I+ G L VH R K KW+ I + S Sbjct: 135 PVSAKIRLGWENPEDCFEIVDAIQSAGANELTVHARTKQGGYKASEIKWEYINKIRERFS 194 Query: 764 IPVIANGDVFEYEDFKRIKDATGATSVMAARGA 862 IP+IANG+++ +ED +R + TG S+M RGA Sbjct: 195 IPLIANGEIWNFEDGQRCIETTGVDSLMVCRGA 227
>Q9JZL5:DUSC_NEIMB tRNA-dihydrouridine synthase C - Neisseria meningitidis serogroup B| Length = 333 Score = 90.5 bits (223), Expect = 2e-17 Identities = 59/153 (38%), Positives = 80/153 (52%), Gaps = 3/153 (1%) Frame = +2 Query: 416 AVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNL--NT 589 A AL+A N ID+N GCP G+ LL +PELI I+ TLR L + Sbjct: 90 AANALEAVRFGANK---IDLNFGCPAPTVNKHKGGAILLKEPELIFHIVKTLRGRLPAHI 146 Query: 590 PVTCKIRL-LNTRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSI 766 P+T K+RL + +E A I + G L VH R + PA W+ I + +++I Sbjct: 147 PLTAKMRLGYEDKSRALECACAIAEGGACGLTVHARTKAEGYEPPAHWEWIRKIRDSVNI 206 Query: 767 PVIANGDVFEYEDFKRIKDATGATSVMAARGAL 865 PV ANGDVF +D+ IK +G SVM RGA+ Sbjct: 207 PVTANGDVFSLQDYIGIKTISGCNSVMLGRGAV 239
>O68273:DUSC_RALEH tRNA-dihydrouridine synthase C - Ralstonia eutropha (strain ATCC| 17699 / H16 / DSM 428 / Stanier 337) (Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)) Length = 322 Score = 90.1 bits (222), Expect = 2e-17 Identities = 73/236 (30%), Positives = 114/236 (48%), Gaps = 4/236 (1%) Frame = +2 Query: 170 NKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTD 349 ++L LAPM R + + G G + +FV RVT L + ER T Sbjct: 2 SRLFLAPMEGLADYVLRDVLTDTG-----GYDGCVSEFV---RVTGSLLPARVY-ERETP 52 Query: 350 SVVFRTCPQERDRVVFQM-GTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSA 526 ++ + +V Q+ G+ A AA ID+N GCP G G+ Sbjct: 53 EILAGGYTRSGTPMVIQLLGSDPEWLARNAAYAATLSPHGIDLNFGCPAKVVNRHGGGAM 112 Query: 527 LLSKPELIHDILTTLRRNL--NTPVTCKIRL-LNTRQDTVELARRIEKCGVPALAVHGRK 697 LL+ PEL++ I+ ++R + + VT K+RL ++ ++ A + + G +L VH R Sbjct: 113 LLTNPELLNRIVASVRAAVPAHIAVTAKMRLGVSDASLAIDCATALAEGGAASLVVHART 172 Query: 698 VKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGAL 865 R PA WD IA + +A+ +PVIANGDV+ D++R + +G VM RGA+ Sbjct: 173 RDHGYRPPAHWDWIARIAAAVDVPVIANGDVWTVADWERCRAVSGCADVMIGRGAV 228
>Q9ZLB6:DUS_HELPJ Probable tRNA-dihydrouridine synthase - Helicobacter pylori J99| (Campylobacter pylori J99) Length = 328 Score = 89.7 bits (221), Expect = 3e-17 Identities = 72/246 (29%), Positives = 112/246 (45%), Gaps = 4/246 (1%) Frame = +2 Query: 158 MDYRNK--LVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDF 331 MD++NK L LAP+ LPFR + ++G D+T E + H V+ T++ L + Sbjct: 1 MDFKNKKWLFLAPLAGYTDLPFRSVVKKFGVDVTTSEMVSSHSLVYAFDKTSKMLEKSPL 60 Query: 332 LERGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSG 511 + + ++ VV +AV + A + V+ ID N GCP + Sbjct: 61 EDHFMAQI-----SGSKESVV-----KEAVEKINALD----HVSGIDFNCGCPAPKVANH 106 Query: 512 GMGSALLSKPELIHDILTTLRRNLNTPVT-CKIRLLNTRQDTVELARRIEKCGVPALAVH 688 G GS LL + +IL +R N N +T K+RL ++ E+A + V + VH Sbjct: 107 GNGSGLLKDLNHLVEILKVIRENTNKKITSVKVRLGFEKKIPKEIAHALNDAPVDYVVVH 166 Query: 689 GRKVKDR-PRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGAL 865 GR DR +D ++ IA + L PVIANG++ + + T A +M R L Sbjct: 167 GRTRSDRYQKDKIDYESIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRATL 226 Query: 866 WNASIF 883 IF Sbjct: 227 RAPWIF 232
>Q9AMN9:DUSC_PSEAC tRNA-dihydrouridine synthase C - Pseudomonas alcaligenes| Length = 315 Score = 89.4 bits (220), Expect = 4e-17 Identities = 55/162 (33%), Positives = 88/162 (54%), Gaps = 4/162 (2%) Frame = +2 Query: 386 RVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCP-KAFSVSGGMGSALLSKPELIHDIL 562 RV F +G+ A AA ID+N GCP K + S G G+ LL +PEL+H I+ Sbjct: 66 RVQF-LGSDPQCLADNAAFACTLGAPVIDLNFGCPAKTVNKSRG-GAVLLKEPELLHAIV 123 Query: 563 TTLRRNL--NTPVTCKIRL-LNTRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWD 733 +RR + PVT K+RL ++ ++ AR + + G + VH R + + PA W+ Sbjct: 124 REVRRTVPAEIPVTAKMRLGFEGKEGALDCARALAEGGASQIVVHARTKVEGYKPPAHWE 183 Query: 734 EIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARG 859 +A V + +PV ANG+V+ +D++R ++ +G +M RG Sbjct: 184 WVARVQEVVGVPVFANGEVWTLDDWRRCREISGVDDIMLGRG 225
>O25427:DUS_HELPY Probable tRNA-dihydrouridine synthase - Helicobacter pylori| (Campylobacter pylori) Length = 328 Score = 88.2 bits (217), Expect = 9e-17 Identities = 72/246 (29%), Positives = 112/246 (45%), Gaps = 4/246 (1%) Frame = +2 Query: 158 MDYRNK--LVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDF 331 MD++NK L LAP+ LPFR + ++G D+T E + H V+ T++ L + Sbjct: 1 MDFKNKKWLFLAPLAGYTDLPFRSVVKKFGVDVTTSEMVSSHSLVYAFDKTSKMLEKSPL 60 Query: 332 LERGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSG 511 + + ++ VV +AV + A E V ID N GCP + Sbjct: 61 EDHFMAQI-----SGSKESVV-----KEAVEKINALE----HVNGIDFNCGCPAPKVANH 106 Query: 512 GMGSALLSKPELIHDILTTLRRNLNTPVT-CKIRLLNTRQDTVELARRIEKCGVPALAVH 688 G GS LL + +L T+R N + +T K+RL ++ E+A + V + VH Sbjct: 107 GNGSGLLKDLNHLVKLLKTIRENTSKKITSVKVRLGFEKKIPKEIAHALNDAPVDYVVVH 166 Query: 689 GRKVKDR-PRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGAL 865 GR D+ +D ++ IA + L PVIANG++ + + T A +M R AL Sbjct: 167 GRTRSDKYQKDKIDYESIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRAAL 226 Query: 866 WNASIF 883 IF Sbjct: 227 RAPWIF 232
>O83945:DUS_TREPA Probable tRNA-dihydrouridine synthase - Treponema pallidum| Length = 340 Score = 86.7 bits (213), Expect = 3e-16 Identities = 73/254 (28%), Positives = 109/254 (42%), Gaps = 12/254 (4%) Frame = +2 Query: 158 MDYRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLE 337 + + + AP+ FR +A E+ A TY E V + + +SL T + Sbjct: 15 LSLKGNVFFAPVAGYSDSAFRSIAIEWEASFTYTE------MVSSEAMVRDSLNTKRLIR 68 Query: 338 RGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCN-DVAAIDINMGCPKAFSVSGG 514 R ++ E + G++ AV A A IV + + IDIN GCP G Sbjct: 69 RASN---------ETHYAIQIFGSNPAVMAETAKLIVDSAQPSCIDINAGCPMPKITKTG 119 Query: 515 MGSALLSKPELIHDILTTLR-----RNLNTPVTCKIRL--LNTRQDTVELARRIEKCGVP 673 G+AL +P +++++ + ++ PVT KIR E AR G Sbjct: 120 AGAALTREPTRLYEVVKAVADAVYAQDARIPVTVKIRAGWEEAHLTWKEAARAAVDAGAQ 179 Query: 674 ALAVHGRKVKDRPRDPAKWDEIADVVSAL----SIPVIANGDVFEYEDFKRIKDATGATS 841 ALA+H R A WD IAD+V +PV +GD+ ED + + + T Sbjct: 180 ALALHPRTCAQCYAGEANWDIIADLVQCARGWGEVPVFGSGDLHAPEDARAMLEHTACAG 239 Query: 842 VMAARGALWNASIF 883 VM ARGA+ N IF Sbjct: 240 VMFARGAMGNPFIF 253
>Q06053:DUS3_YEAST tRNA-dihydrouridine synthase 3 - Saccharomyces cerevisiae (Baker's| yeast) Length = 609 Score = 85.9 bits (211), Expect = 5e-16 Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 31/273 (11%) Frame = +2 Query: 158 MDYRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLE 337 +D +K +++P+ G LP+R L + GAD+TY E + + Sbjct: 289 LDLYHKKIVSPLTTVGNLPYRRLMRKLGADVTYSEMALAVPLI----------------- 331 Query: 338 RGTDS--VVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCN---DVAAIDINMGCPKAFS 502 +GT+S + + E Q+ S A +A KAAE + N +++ I++N GCP Sbjct: 332 QGTNSEWALPKAHTSEFPGFGVQVACSKAWQAAKAAEALANSVSEISEINLNSGCPIDLL 391 Query: 503 VSGGMGSALLSKPELIHDILTTLRR-NLNTPVTCKIRLLNTRQDTVE---LARRIEKCGV 670 G GSALL P + L + + + P+T KIR + + R + + V Sbjct: 392 YRQGSGSALLDNPARMIRCLNAMNYVSKDIPITVKIRTGTKEGHPIAEGLVKRLVNETDV 451 Query: 671 PALAVHGRKVKDRPRDPAKWDEIADVVSAL---------------------SIPVIANGD 787 A+ +HGR + R A WD ++ V L I + NGD Sbjct: 452 AAITLHGRSRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGKEGRDSKNRIQFVGNGD 511 Query: 788 VFEYEDFKR-IKDATGATSVMAARGALWNASIF 883 V +ED+ R + SVM ARGAL IF Sbjct: 512 VNNFEDWYRYLNGNENIDSVMVARGALIKPWIF 544
>Q92JQ6:DUS_RICCN Probable tRNA-dihydrouridine synthase - Rickettsia conorii| Length = 331 Score = 85.1 bits (209), Expect = 8e-16 Identities = 65/237 (27%), Positives = 100/237 (42%), Gaps = 2/237 (0%) Frame = +2 Query: 158 MDYRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLE 337 ++ + ++LAPM L FR L +GA + E + + R +SL + + Sbjct: 7 IELSSNIILAPMSGVTDLEFRRLVKRFGAGLVVSEMVASRAMIVESR---QSLKKSAIMR 63 Query: 338 RGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGM 517 S + E + + ++ + A ID+N GCP V G Sbjct: 64 DDATSACVQLAGCEPNVIAEAAKMNEGMGA-----------KIIDLNFGCPAKKVVGGYS 112 Query: 518 GSALLSKPELIHDILTTLRRNLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPALAVHG 691 GSAL+ +L I + PVT K+R+ + ++ LA+ E GV + VHG Sbjct: 113 GSALMKDEQLAAKIFEATVEAVKLPVTVKMRMGWDDNTKNAPTLAKIAESSGVQMITVHG 172 Query: 692 RKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGA 862 R A WD I V ++ IPVIANGD+ + K +GA +M RGA Sbjct: 173 RTRCQFYSGNADWDFIRSVKESVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGA 229
>Q4UNJ4:DUS_RICFE Probable tRNA-dihydrouridine synthase - Rickettsia felis| (Rickettsia azadi) Length = 325 Score = 84.7 bits (208), Expect = 1e-15 Identities = 70/239 (29%), Positives = 103/239 (43%), Gaps = 4/239 (1%) Frame = +2 Query: 158 MDYRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLE 337 ++ + ++LAPM L FR L +GA + E I V R +S+ + Sbjct: 7 IELSSNVILAPMSDITDLEFRKLVKRFGAGLVVSEMIASRAMVVKSR---QSMQKCAIVH 63 Query: 338 RGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAA--IDINMGCPKAFSVSG 511 S + E + + A K E D+ A ID+N GCP V G Sbjct: 64 DDPTSACVQLAGCEPNVIA---------EAAKMNE----DMGAKIIDLNFGCPAKKVVGG 110 Query: 512 GMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPALAV 685 GSAL+ +L I + + P+T K+R+ + ++ +LA+ E GV + V Sbjct: 111 YAGSALMRDEQLAAKIFEATVKAVKIPITVKMRMGWDDNTKNAPDLAKIAESSGVQMVTV 170 Query: 686 HGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGA 862 HGR A WD I V A+ IPVIANGD+ + K +GA +M RGA Sbjct: 171 HGRTRCQFYSGNADWDFIRSVKEAVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGA 229
>Q9CJW1:DUSC_PASMU tRNA-dihydrouridine synthase C - Pasteurella multocida| Length = 312 Score = 84.0 bits (206), Expect = 2e-15 Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 17/204 (8%) Frame = +2 Query: 353 VVFRTCPQERDRVVFQMGTSDAVRAL---------KAAEIVCNDVAAIDINMGCPKAFSV 505 V +R CP+ + + GT V+ L A + ID+N GCP Sbjct: 45 VFYRLCPELYQQGLTASGTPVRVQLLGQHPQWLAENAQRAIELGSHGIDLNCGCPSKTVN 104 Query: 506 SGGMGSALLSKPELIHDILTTLRRNLNT--PVTCKIRL-LNTRQDTVELARRIEKCGVPA 676 G++LL +PELI+ LR + PV+ K+RL + + E+A +++ G Sbjct: 105 GSNGGASLLKQPELIYHATKALRAAVPKALPVSVKVRLGWDNSEQAFEIADAVQQGGATE 164 Query: 677 LAVHGRKVKDRPR-DPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAA 853 + +HGR D R D W +I DV LSIPVIANG++++++ + TG +M Sbjct: 165 ITIHGRTKMDGYRADRINWAKINDVRQRLSIPVIANGEIWDWQSGQACLAETGCQDLMIG 224 Query: 854 RGAL----WNASIFSPNGKVPWED 913 RGAL + + K+PW + Sbjct: 225 RGALNIPNLSQVVKFNQAKMPWAE 248
>Q9ZED2:DUS_RICPR Probable tRNA-dihydrouridine synthase - Rickettsia prowazekii| Length = 327 Score = 83.6 bits (205), Expect = 2e-15 Identities = 72/239 (30%), Positives = 101/239 (42%), Gaps = 5/239 (2%) Frame = +2 Query: 158 MDYRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLE 337 ++ + ++LAPM L FR L +GA + E I + R +S+ + Sbjct: 7 IELSSNVILAPMSDVTDLEFRKLVKRFGAGLVVSEMIASRAMIMKSR---QSMQKCAIMH 63 Query: 338 RGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAA--IDINMGCPKAFSVSG 511 S + E D + A K E D+ A ID+N GCP V G Sbjct: 64 DDPTSACVQLAGCEPDVIA---------EAAKMNE----DMGAKIIDLNFGCPAKKVVGG 110 Query: 512 GMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLL---NTRQDTVELARRIEKCGVPALA 682 GSAL+ +L I + + PVT K+R+ NTR + LA+ GV + Sbjct: 111 YAGSALMRDEQLAAKIFEATVKAVKIPVTVKMRIGWDDNTR-NAPTLAKIAANSGVQMVT 169 Query: 683 VHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARG 859 VHGR A WD I V A+ IPVIANGD+ + K +GA +M RG Sbjct: 170 VHGRTRCQFYSGNANWDFIRTVKEAVKIPVIANGDITNFAKAKEALQRSGADGIMVGRG 228
>Q1RH84:DUS_RICBR Probable tRNA-dihydrouridine synthase - Rickettsia bellii (strain| RML369-C) Length = 326 Score = 83.6 bits (205), Expect = 2e-15 Identities = 69/239 (28%), Positives = 105/239 (43%), Gaps = 4/239 (1%) Frame = +2 Query: 158 MDYRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLE 337 ++ + ++LAPM L FR L +GA + E I + R +SL ++ Sbjct: 7 IELSSNIILAPMSGVTDLEFRRLVKRFGAGLVVSEMIASRAMIVESR---QSLQKCSIMQ 63 Query: 338 RGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAA--IDINMGCPKAFSVSG 511 S + E + + A K E D+ A ID+N GCP V+G Sbjct: 64 DDATSACVQLAGCEPNVIA---------EAAKMNE----DMGAKIIDLNFGCPAKKVVNG 110 Query: 512 GMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPALAV 685 GSAL+ L I + + PVT K+R+ + ++ LA+ E+ G+ + V Sbjct: 111 YSGSALMRDEGLAAKIFEAAVKAVKIPVTVKMRMGWDDQTKNAPTLAKIAERSGIQMVTV 170 Query: 686 HGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGA 862 HGR A W+ I +V A+ IPVIANGD+ + K + + A VM RGA Sbjct: 171 HGRTRCQFYSGNADWEFIKNVKEAVKIPVIANGDITNFAKAKEALEKSSADGVMVGRGA 229
>Q8DAH1:DUSC_VIBVU tRNA-dihydrouridine synthase C - Vibrio vulnificus| Length = 318 Score = 82.8 bits (203), Expect = 4e-15 Identities = 59/189 (31%), Positives = 90/189 (47%), Gaps = 16/189 (8%) Frame = +2 Query: 347 DSVVFRTCPQERDRVVFQMGTSDAVR------------ALKAAEIVCNDVAAIDINMGCP 490 D V +R CP+ + + G V+ A++AA++ + ID+N GCP Sbjct: 43 DHVFYRLCPELKQGSKTKNGVPVKVQLLGQDPHWMAENAIRAAQLGAH---GIDLNFGCP 99 Query: 491 KAFSVSGGMGSALLSKPELIHDILTTLRRNL--NTPVTCKIRL-LNTRQDTVELARRIEK 661 G+ALL PELI+ ++ R + + PV+ KIRL +D E+ +E+ Sbjct: 100 AKMVNQSKGGAALLQHPELIYQVVKACRDAVPSHIPVSAKIRLGWENPEDCFEIVDAVEQ 159 Query: 662 CGVPALAVHGR-KVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGAT 838 L VH R K KWD I + +IP+IANG+++ Y D + + TG Sbjct: 160 GKADELTVHARTKAGGYKASEIKWDYIDQIRQRSTIPLIANGEIWNYADGQACIETTGID 219 Query: 839 SVMAARGAL 865 S+M RGAL Sbjct: 220 SLMVCRGAL 228
>P33371:DUSC_ECOLI tRNA-dihydrouridine synthase C - Escherichia coli| Length = 315 Score = 82.4 bits (202), Expect = 5e-15 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 13/184 (7%) Frame = +2 Query: 353 VVFRTCPQERDRVVFQMGTSDAVRAL---------KAAEIVCNDVAAIDINMGCPKAFSV 505 V R CP+ ++ GT V+ L AA V +D+N GCP Sbjct: 45 VFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVN 104 Query: 506 SGGMGSALLSKPELIHDILTTLRRNL--NTPVTCKIRL-LNTRQDTVELARRIEKCGVPA 676 G G+ LL PELI+ +R + + PV+ K+RL ++ + E+A +++ G Sbjct: 105 GSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATE 164 Query: 677 LAVHGRKVKDRPR-DPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAA 853 L VHGR + R + W I D+ L+IPVIANG++++++ ++ +G +VM Sbjct: 165 LVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIG 224 Query: 854 RGAL 865 RGAL Sbjct: 225 RGAL 228
>O67533:DUS_AQUAE Probable tRNA-dihydrouridine synthase - Aquifex aeolicus| Length = 316 Score = 81.6 bits (200), Expect = 9e-15 Identities = 63/244 (25%), Positives = 101/244 (41%), Gaps = 5/244 (2%) Frame = +2 Query: 167 RNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGT 346 + +++LAPM FR L GAD TY E + L G Sbjct: 5 KGEVILAPMASYTHSAFRRLCRRLGADRTY----------------TELISAVGVLRNGI 48 Query: 347 DSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAA--IDINMGCPKAFSVSGGMG 520 + +ER + Q+ S+ +A+ ++ ++ IDIN GC + Sbjct: 49 PMKLAYFTEEERP-IHIQVFGSNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAA 107 Query: 521 SALLSKPELIHDILTTLRRNLNT---PVTCKIRLLNTRQDTVELARRIEKCGVPALAVHG 691 +L P L+ +++ L PV+ KIRL + + + ++K GV +A+H Sbjct: 108 GYMLQCPPLMGEVVKETVEALKPYGIPVSAKIRLGFEKDEVERIVEELQKAGVSLIAIHA 167 Query: 692 RKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWN 871 R K A W I + S+P+I +GDV + D +R+ + T VM R AL N Sbjct: 168 RTAKQGFSGKALWHRIKEAKKVASVPIIGSGDVKSWRDIERMFEETECDGVMVGRAALSN 227 Query: 872 ASIF 883 IF Sbjct: 228 PWIF 231
>Q8XEC6:DUSC_ECO57 tRNA-dihydrouridine synthase C - Escherichia coli O157:H7| Length = 316 Score = 81.6 bits (200), Expect = 9e-15 Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 13/184 (7%) Frame = +2 Query: 353 VVFRTCPQERDRVVFQMGTSDAVRAL---------KAAEIVCNDVAAIDINMGCPKAFSV 505 V R CP+ ++ GT V+ L AA V +D+N GCP Sbjct: 45 VFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVN 104 Query: 506 SGGMGSALLSKPELIHDILTTLRRNL--NTPVTCKIRL-LNTRQDTVELARRIEKCGVPA 676 G G+ LL PELI+ +R + + PV+ K+RL ++ + E+A +++ G Sbjct: 105 GSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATE 164 Query: 677 LAVHGRKVKDRPR-DPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAA 853 L VHGR + R + W I ++ L+IPVIANG++++++ + +G SVM Sbjct: 165 LVVHGRTKEQGYRAEHIDWQAIGEIRQRLNIPVIANGEIWDWQSAQECMAISGCDSVMIG 224 Query: 854 RGAL 865 RGAL Sbjct: 225 RGAL 228
>Q7UC91:DUSC_SHIFL tRNA-dihydrouridine synthase C - Shigella flexneri| Length = 315 Score = 81.3 bits (199), Expect = 1e-14 Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 13/184 (7%) Frame = +2 Query: 353 VVFRTCPQERDRVVFQMGTSDAVRAL---------KAAEIVCNDVAAIDINMGCPKAFSV 505 V R CP+ ++ GT V+ L AA V +D+N GCP Sbjct: 45 VFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGFWGVDLNCGCPSKTVN 104 Query: 506 SGGMGSALLSKPELIHDILTTLRRNL--NTPVTCKIRL-LNTRQDTVELARRIEKCGVPA 676 G G+ LL PELI+ +R + + PV+ K+RL ++ + E+A +++ G Sbjct: 105 GSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATE 164 Query: 677 LAVHGRKVKDRPR-DPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAA 853 L VHGR + R + W I ++ L+IPVIANG++++++ ++ +G +VM Sbjct: 165 LVVHGRTKEQGYRAEHIDWQAIGEIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIG 224 Query: 854 RGAL 865 RGAL Sbjct: 225 RGAL 228
>Q8FFV5:DUSC_ECOL6 tRNA-dihydrouridine synthase C - Escherichia coli O6| Length = 316 Score = 80.9 bits (198), Expect = 2e-14 Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 13/184 (7%) Frame = +2 Query: 353 VVFRTCPQERDRVVFQMGTSDAVRAL---------KAAEIVCNDVAAIDINMGCPKAFSV 505 V R CP+ ++ GT V+ L AA V +D+N GCP Sbjct: 45 VFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVN 104 Query: 506 SGGMGSALLSKPELIHDILTTLRRNL--NTPVTCKIRL-LNTRQDTVELARRIEKCGVPA 676 G G+ LL PELI+ +R + + PV+ K+RL ++ + E+A +++ G Sbjct: 105 GSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATE 164 Query: 677 LAVHGRKVKDRPR-DPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAA 853 L VHGR + R + W I ++ L+IPVIANG++++++ ++ +G +VM Sbjct: 165 LVVHGRTKEQGYRAEHIDWQAIGEIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIG 224 Query: 854 RGAL 865 RGAL Sbjct: 225 RGAL 228
>Q68XZ3:DUS_RICTY Probable tRNA-dihydrouridine synthase - Rickettsia typhi| Length = 327 Score = 80.5 bits (197), Expect = 2e-14 Identities = 84/297 (28%), Positives = 119/297 (40%), Gaps = 4/297 (1%) Frame = +2 Query: 158 MDYRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLE 337 ++ + ++LAPM L FR L +GA + E I + R +S+ + Sbjct: 7 IELSSNVILAPMSNITDLEFRKLVKRFGAGLVVSEMIASRAMIMKSR---QSMQKCAIMH 63 Query: 338 RGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAA--IDINMGCPKAFSVSG 511 S + E D + +DA + + D+ A ID+N GCP V G Sbjct: 64 DDPTSACVQLAGCEPDVI------ADAAK-------MNEDMGAKIIDLNFGCPAKKVVGG 110 Query: 512 GMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPALAV 685 GSAL+ L I + + PVT K+R+ + ++ LA GV + V Sbjct: 111 YAGSALMRDERLATKIFEATVKAVKIPVTVKMRMGWDDNTKNAPTLAVIAASSGVQMVTV 170 Query: 686 HGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGAL 865 HGR A WD I V A+ IPVIANGD+ + K +GA +M RG Sbjct: 171 HGRTRCQFYSGNANWDFIRVVKEAVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGVY 230 Query: 866 WNASIFSPNGKVPWEDFKREYVRKTILWDNCIKSTKTTLREIIMHYICLELPEGKGV 1036 GK PW + Y KT + S L II HY + GK V Sbjct: 231 ---------GK-PWLISQIAYYLKTGK-EKPAPSIAEQLDIIIKHYDAIIDYYGKSV 276
>Q9KT00:DUSC_VIBCH tRNA-dihydrouridine synthase C - Vibrio cholerae| Length = 323 Score = 80.5 bits (197), Expect = 2e-14 Identities = 62/189 (32%), Positives = 87/189 (46%), Gaps = 16/189 (8%) Frame = +2 Query: 347 DSVVFRTCPQERDR--------VVFQMGTSD----AVRALKAAEIVCNDVAAIDINMGCP 490 D V +R CP+ + V Q+ D A A++AAE+ ID+N GCP Sbjct: 43 DHVFYRLCPELQQGSKTPSGVPVKVQLLGQDPHWMAENAIRAAEL---GAYGIDLNFGCP 99 Query: 491 KAFSVSGGMGSALLSKPELIHDILTTLRRNL--NTPVTCKIRL-LNTRQDTVELARRIEK 661 G+ALL PELI+ ++ R + + PV+ KIRL +D E+ + + Sbjct: 100 AKMVNQSKGGAALLQHPELIYQVVKACRDAVPAHIPVSAKIRLGWEDPEDCFEIVDAVAQ 159 Query: 662 CGVPALAVHGR-KVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGAT 838 L VH R K KW I + SIP+IANG+V+ Y D + TG Sbjct: 160 AKADELTVHARTKAGGYKASEIKWHYIDQIRQKCSIPLIANGEVWNYADGQACIQTTGVD 219 Query: 839 SVMAARGAL 865 S+M RGAL Sbjct: 220 SLMVCRGAL 228
>Q8ZNM4:DUSC_SALTY tRNA-dihydrouridine synthase C - Salmonella typhimurium| Length = 312 Score = 80.5 bits (197), Expect = 2e-14 Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 13/184 (7%) Frame = +2 Query: 353 VVFRTCPQERDRVVFQMGTSDAVRAL---------KAAEIVCNDVAAIDINMGCPKAFSV 505 V R CP+ GT ++ L AA +D+N GCP Sbjct: 45 VFHRICPELHHASRTPSGTPVRIQLLGQHPQWLAENAARATALGSYGVDLNCGCPSKVVN 104 Query: 506 SGGMGSALLSKPELIHDILTTLRRNL--NTPVTCKIRL-LNTRQDTVELARRIEKCGVPA 676 G G+ LL PELI+ +R + + PVT K+RL ++ E+A +++ G Sbjct: 105 GSGGGATLLKDPELIYQGAKAMRAAVPSHLPVTVKVRLGWDSGDRKFEIADAVQQAGASE 164 Query: 677 LAVHGR-KVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAA 853 L VHGR K + + W I ++ L+IPVIANG++ +++ + +G +VM Sbjct: 165 LVVHGRTKAQGYRAEHIDWQAIGEIRQRLTIPVIANGEILDWQSAQACMATSGCDAVMIG 224 Query: 854 RGAL 865 RGAL Sbjct: 225 RGAL 228
>Q8Z5B2:DUSC_SALTI tRNA-dihydrouridine synthase C - Salmonella typhi| Length = 312 Score = 80.5 bits (197), Expect = 2e-14 Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 4/137 (2%) Frame = +2 Query: 467 IDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNL--NTPVTCKIRL-LNTRQDTV 637 +D+N GCP G G+ LL+ PELI+ +R + + PVT K+RL ++ Sbjct: 92 VDLNCGCPSKVVNGSGGGATLLTDPELIYQGAKAMRAAVPSHLPVTVKVRLGWDSGDRKF 151 Query: 638 ELARRIEKCGVPALAVHGR-KVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKR 814 E+A +++ G L VHGR K + + W I ++ L+IPVIANG++++++ + Sbjct: 152 EIADAVQQAGASELVVHGRTKAQGYRAEHIDWQAIGEIRQRLTIPVIANGEIWDWQSAQA 211 Query: 815 IKDATGATSVMAARGAL 865 +G +VM RGAL Sbjct: 212 CMATSGCDAVMIGRGAL 228
>Q7VKU5:DUSC_HAEDU tRNA-dihydrouridine synthase C - Haemophilus ducreyi| Length = 325 Score = 76.6 bits (187), Expect = 3e-13 Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 4/137 (2%) Frame = +2 Query: 467 IDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNT--PVTCKIRL-LNTRQDTV 637 ID N GCP G+ALL PELI+ +R + PV+ K+RL + Sbjct: 97 IDFNCGCPSKTVNGSHGGAALLKDPELIYCATKAIREAVPKAQPVSVKMRLGWDCASQCF 156 Query: 638 ELARRIEKCGVPALAVHGRKVKDRPR-DPAKWDEIADVVSALSIPVIANGDVFEYEDFKR 814 E+A I++ G + VHGR +D R + W I + L+IPVIANG++ ++ ++ Sbjct: 157 EIADAIQQAGADEITVHGRTKQDGYRAERINWQAIGQIQQRLNIPVIANGEILDFNSAQK 216 Query: 815 IKDATGATSVMAARGAL 865 ++ T +M RGAL Sbjct: 217 CREITACCGLMIGRGAL 233
>Q50049:DUS_MYCLE Probable tRNA-dihydrouridine synthase - Mycobacterium leprae| Length = 384 Score = 75.9 bits (185), Expect = 5e-13 Identities = 73/262 (27%), Positives = 112/262 (42%), Gaps = 26/262 (9%) Frame = +2 Query: 179 VLAPMVRAGTLPFRLLAAEYGADITYGEEI------------------IDHKFVHCQRVT 304 +LAPM + FR L E+G+ T G + I +V C+ VT Sbjct: 1 MLAPMAGVTNVTFRTLCREFGS--TRGNLLRPAPPHLRSPLEQSQVGTISGLYV-CEMVT 57 Query: 305 NESLGTTDFLERGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAA--IDIN 478 +L +ER ++ T + Q+ T D AA++V ++ A ID+N Sbjct: 58 ARAL-----VERNAVTIHMTTFAPDESPRSLQLYTVDPATTYTAAKMVADEGLADHIDMN 112 Query: 479 MGCPKAFSVSGGMGSALLSKPELIHDILTTLRR---NLNTPVTCKIRL-LNTRQDT-VEL 643 GCP G G+AL K L I+ R PVT K R+ ++ T ++ Sbjct: 113 FGCPMPKVTRRGGGAALPYKRRLFGQIVAAAVRATEGTKIPVTVKFRIGIDDEHHTHLDA 172 Query: 644 ARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSAL-SIPVIANGDVFEYEDFKRIK 820 R E G A+A+H R R A W +IA + + +IPV+ NGD+++ D + Sbjct: 173 GRIAEAEGAAAVALHARTAAQRYSGTADWAQIAQLKQQVRTIPVLGNGDIYDASDALAMM 232 Query: 821 DATGATSVMAARGALWNASIFS 886 TG V+ RG L +F+ Sbjct: 233 AVTGCDGVVIGRGCLGRPWLFA 254
>O53835:DUS_MYCTU Probable tRNA-dihydrouridine synthase - Mycobacterium tuberculosis| Length = 389 Score = 72.8 bits (177), Expect = 4e-12 Identities = 67/251 (26%), Positives = 108/251 (43%), Gaps = 8/251 (3%) Frame = +2 Query: 158 MDYRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLE 337 ++ + +VLAPM + FR L + + +V C+ VT +L +E Sbjct: 18 IELASPVVLAPMAGVTNVAFRALCRQLEQSKV---GTVSGLYV-CEMVTARAL-----IE 68 Query: 338 RGTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAA--IDINMGCPKAFSVSG 511 R ++ T + Q+ T D AA ++ + A ID+N GCP Sbjct: 69 RHPVTMHMTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKR 128 Query: 512 GMGSALLSKPELIHDILTTLRR---NLNTPVTCKIRLL--NTRQDTVELARRIEKCGVPA 676 G G+AL K L I+ R + PVT K R+ + ++ R E G A Sbjct: 129 GGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAA 188 Query: 677 LAVHGRKVKDRPRDPAKWDEIADVVSAL-SIPVIANGDVFEYEDFKRIKDATGATSVMAA 853 +A+H R R A W++IA + + +IPV+ NGD+++ D + TG V+ Sbjct: 189 VALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIG 248 Query: 854 RGALWNASIFS 886 RG L +F+ Sbjct: 249 RGCLGRPWLFA 259
>Q9CL29:DUSA_PASMU tRNA-dihydrouridine synthase A - Pasteurella multocida| Length = 327 Score = 54.7 bits (130), Expect = 1e-06 Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 5/183 (2%) Frame = +2 Query: 164 YRNKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERG 343 YR + +APM+ T R ++ H ++ + VT ++ + Sbjct: 9 YRGRFSVAPMLDWTTRHCRYFHRQFS----------QHALLYTEMVTTGAI-----IHAK 53 Query: 344 TDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCN-DVAAIDINMGCPKAFSVSGGMG 520 D + F P E V Q+G SD + + A+I I++N+GCP +G G Sbjct: 54 YDHLEFS--PAENP-VALQLGGSDPTQLAQCAKIAQQRGYTEINLNVGCPSDRVQNGMFG 110 Query: 521 SALLSKPELIHDILTTLRRNLNTPVTCKIRL----LNTRQDTVELARRIEKCGVPALAVH 688 + L++K +L+ D ++ ++ ++ PVT K R+ L++ + E +++ + G +H Sbjct: 111 ACLMAKADLVADCVSAMQTEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIH 170 Query: 689 GRK 697 RK Sbjct: 171 ARK 173
>P72872:DUS2_SYNY3 Probable tRNA-dihydrouridine synthase 2 - Synechocystis sp. (strain| PCC 6803) Length = 334 Score = 53.9 bits (128), Expect = 2e-06 Identities = 52/253 (20%), Positives = 107/253 (42%), Gaps = 14/253 (5%) Frame = +2 Query: 170 NKLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTD 349 N L +APM+ FR ++ H ++ + +T +++ G Sbjct: 11 NPLSVAPMMDHTDRHFRYFL----------RQLTRHTLLYTEMITAQAI------LHGDR 54 Query: 350 SVVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCN-DVAAIDINMGCPKAFSVSGGMGSA 526 + P+E+ V Q+G D + A I + I++N+GCP SG G+ Sbjct: 55 QRLLNFSPEEKP-VALQLGGDDPQLLAECARIGQDWGYDEINLNVGCPSDRVQSGNFGAC 113 Query: 527 LLSKPELIHDILTTLRRNLNTPVTCKIRL----LNTRQDTVELARRIEKCGVPALAVHGR 694 L+++P+L+ ++ +++ + PVT K R+ ++ +D V + G VH R Sbjct: 114 LMAQPDLVAQCVSAMQKAVEIPVTVKHRIGIDHRDSYEDLVHFVEIVANAGCQRFTVHAR 173 Query: 695 KV--------KDRPRDPAKWDEIADVVSAL-SIPVIANGDVFEYEDFKRIKDATGATSVM 847 K ++R P +++++ + + + NG + + E + + + +VM Sbjct: 174 KAWLQGLSPKENRTIPPLRYEDVYQLKKDFPQLLIEINGGITQTEQIQ--QHLSHVDAVM 231 Query: 848 AARGALWNASIFS 886 R A N +F+ Sbjct: 232 VGRAAYENPYLFA 244
>O31546:DUS2_BACSU Probable tRNA-dihydrouridine synthase 2 - Bacillus subtilis| Length = 325 Score = 53.5 bits (127), Expect = 3e-06 Identities = 59/249 (23%), Positives = 96/249 (38%), Gaps = 9/249 (3%) Frame = +2 Query: 179 VLAPMVRAGTLPFRLLAAEYGA-DITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTDSV 355 VLAPM + FR + +E G D+ + E + H G DSV Sbjct: 15 VLAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSESYCHPD---------------GKDSV 59 Query: 356 VFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVA--AIDINMGCPKAFSVSGGMGSAL 529 R E ++ + D + I ++ +DINMGCP G GS L Sbjct: 60 RGRLTFTEDEQPIVAHIWGDKPENFRKMSIGMAELGFKGLDINMGCPVPNVAGNGKGSGL 119 Query: 530 LSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDT-VELARRIEKCGVPALAVHGRKVKD 706 + +P + +++ + PV+ K RL T D E I K + L++H R + Sbjct: 120 ICRPAVAAELIQAAKAG-GLPVSVKTRLGYTDVDEWREWLTHILKQDIANLSIHLRTRAE 178 Query: 707 RPRDPAKWDEIADVVS-----ALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWN 871 + A W+ I ++ A + NGD+ + + ++ + G +M RG N Sbjct: 179 MSKVDAHWELIPEIKKLRDEVAPDTLLTINGDIPDRQTGLKLAEQYGVDGIMIGRGIFTN 238 Query: 872 ASIFSPNGK 898 F K Sbjct: 239 PFAFEKEPK 247
>Q9KUX9:DUSA_VIBCH tRNA-dihydrouridine synthase A - Vibrio cholerae| Length = 327 Score = 53.1 bits (126), Expect = 3e-06 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 8/149 (5%) Frame = +2 Query: 275 HKFVHCQRVTNESLGTTDFLERGTDSVVFRTCPQERDRVVFQMGTS---DAVRALKAAEI 445 H+ + Q + + TT + G F QE V Q G S D K A+ Sbjct: 24 HRLLSAQTLLYTEMVTTGAIIHGRGD--FLAYNQEEHPVALQFGGSNPKDLAHCAKLAQE 81 Query: 446 VCNDVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTR 625 D I++N+GCP +G G+ L+ +P+L+ + + +R ++ PVT K R+ Sbjct: 82 RGYD--EINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDD 139 Query: 626 QDTVE-----LARRIEKCGVPALAVHGRK 697 QD+ E +A EK G +H RK Sbjct: 140 QDSYEFLTQFIATVAEKGGCEQFTIHARK 168
>Q8CWK7:DUSA_VIBVU tRNA-dihydrouridine synthase A - Vibrio vulnificus| Length = 326 Score = 52.0 bits (123), Expect = 7e-06 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 13/150 (8%) Frame = +2 Query: 287 HCQR----VTNESLGTTDFLERGT---DSVVFRTCPQERDRVVFQMGTSDAVRALKAAEI 445 HC+ +T E+L T+ + G F QE V Q+G S+ A++ Sbjct: 19 HCRYFHRLMTKETLLYTEMITTGAIIHGKGDFLAYNQEEHPVALQLGGSNPQDLATCAKL 78 Query: 446 VCN-DVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNT 622 +++N+GCP +G G+ L+++P+L+ D + ++ ++ PVT K R+ Sbjct: 79 AAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVVDIPVTVKTRIGID 138 Query: 623 RQDTVELARRI-----EKCGVPALAVHGRK 697 QD+ E EK G +H RK Sbjct: 139 DQDSYEFLTDFVSIVSEKGGCEQFTIHARK 168
>Q8EAJ0:DUSA_SHEON tRNA-dihydrouridine synthase A - Shewanella oneidensis| Length = 335 Score = 51.6 bits (122), Expect = 1e-05 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Frame = +2 Query: 359 FRTCPQERDRVVFQMGTSDAVRALKAAEIVCN-DVAAIDINMGCPKAFSVSGGMGSALLS 535 + T QE + Q+G S+ V + A++ +++N+GCP +G G+ L++ Sbjct: 59 YLTYNQEEHPLALQLGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMA 118 Query: 536 KPELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVELARR----IEKCGVPALAVHGRK 697 +PEL+ + + +++ ++ PVT K R+ QD+ E + G +H RK Sbjct: 119 EPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARK 176
>Q87L85:DUSA_VIBPA tRNA-dihydrouridine synthase A - Vibrio parahaemolyticus| Length = 326 Score = 51.2 bits (121), Expect = 1e-05 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 13/150 (8%) Frame = +2 Query: 287 HCQR----VTNESLGTTDFLERGT---DSVVFRTCPQERDRVVFQMGTSDAVRALKAAEI 445 HC+ +T E+L T+ + G F +E + Q+G S+ K A++ Sbjct: 19 HCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPEDLAKCAKL 78 Query: 446 VCN-DVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNT 622 I++N+GCP +G G+ L+++P+L+ D + ++ ++ PVT K R+ Sbjct: 79 AQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVVDVPVTVKTRIGID 138 Query: 623 RQDTVELARRI-----EKCGVPALAVHGRK 697 QD+ E EK G +H RK Sbjct: 139 DQDSYEFLTDFVSIVSEKGGCEQFTIHARK 168
>Q8NYV4:DUS_STAAW Probable tRNA-dihydrouridine synthase - Staphylococcus aureus| (strain MW2) Length = 328 Score = 50.4 bits (119), Expect = 2e-05 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 6/159 (3%) Frame = +2 Query: 467 IDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDT-VEL 643 ID+NMGCP A G GS L+ +P++ +I+ + PV+ K RL D + Sbjct: 99 IDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATKAG-GLPVSVKTRLGYYEIDEWKDW 157 Query: 644 ARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVS-----ALSIPVIANGDVFEYEDF 808 + + + + L++H R K+ + A W+ I + + A + + NGD+ + + Sbjct: 158 LKHVFEQDIANLSIHLRTRKEMSKVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTG 217 Query: 809 KRIKDATGATSVMAARGALWNASIFSPNGKVPWEDFKRE 925 + + G VM RG N F K P E +E Sbjct: 218 LELAEKYGIDGVMIGRGIFHNPFAFE---KEPREHTSKE 253
>Q6GD38:DUS_STAAS Probable tRNA-dihydrouridine synthase - Staphylococcus aureus| (strain MSSA476) Length = 328 Score = 50.4 bits (119), Expect = 2e-05 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 6/159 (3%) Frame = +2 Query: 467 IDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDT-VEL 643 ID+NMGCP A G GS L+ +P++ +I+ + PV+ K RL D + Sbjct: 99 IDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATKAG-GLPVSVKTRLGYYEIDEWKDW 157 Query: 644 ARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVS-----ALSIPVIANGDVFEYEDF 808 + + + + L++H R K+ + A W+ I + + A + + NGD+ + + Sbjct: 158 LKHVFEQDIANLSIHLRTRKEMSKVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTG 217 Query: 809 KRIKDATGATSVMAARGALWNASIFSPNGKVPWEDFKRE 925 + + G VM RG N F K P E +E Sbjct: 218 LELAEKYGIDGVMIGRGIFHNPFAFE---KEPREHTSKE 253
>P67717:DUS_STAAN Probable tRNA-dihydrouridine synthase - Staphylococcus aureus| (strain N315) Length = 328 Score = 50.4 bits (119), Expect = 2e-05 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 6/159 (3%) Frame = +2 Query: 467 IDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDT-VEL 643 ID+NMGCP A G GS L+ +P++ +I+ + PV+ K RL D + Sbjct: 99 IDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATKAG-GLPVSVKTRLGYYEIDEWKDW 157 Query: 644 ARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVS-----ALSIPVIANGDVFEYEDF 808 + + + + L++H R K+ + A W+ I + + A + + NGD+ + + Sbjct: 158 LKHVFEQDIANLSIHLRTRKEMSKVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTG 217 Query: 809 KRIKDATGATSVMAARGALWNASIFSPNGKVPWEDFKRE 925 + + G VM RG N F K P E +E Sbjct: 218 LELAEKYGIDGVMIGRGIFHNPFAFE---KEPREHTSKE 253
>P67716:DUS_STAAM Probable tRNA-dihydrouridine synthase - Staphylococcus aureus| (strain Mu50 / ATCC 700699) Length = 328 Score = 50.4 bits (119), Expect = 2e-05 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 6/159 (3%) Frame = +2 Query: 467 IDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDT-VEL 643 ID+NMGCP A G GS L+ +P++ +I+ + PV+ K RL D + Sbjct: 99 IDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATKAG-GLPVSVKTRLGYYEIDEWKDW 157 Query: 644 ARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVS-----ALSIPVIANGDVFEYEDF 808 + + + + L++H R K+ + A W+ I + + A + + NGD+ + + Sbjct: 158 LKHVFEQDIANLSIHLRTRKEMSKVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTG 217 Query: 809 KRIKDATGATSVMAARGALWNASIFSPNGKVPWEDFKRE 925 + + G VM RG N F K P E +E Sbjct: 218 LELAEKYGIDGVMIGRGIFHNPFAFE---KEPREHTSKE 253
>Q5HJT5:DUS_STAAC Probable tRNA-dihydrouridine synthase - Staphylococcus aureus| (strain COL) Length = 328 Score = 50.4 bits (119), Expect = 2e-05 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 6/159 (3%) Frame = +2 Query: 467 IDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDT-VEL 643 ID+NMGCP A G GS L+ +P++ +I+ + PV+ K RL D + Sbjct: 99 IDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATKAG-GLPVSVKTRLGYYEIDEWKDW 157 Query: 644 ARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVS-----ALSIPVIANGDVFEYEDF 808 + + + + L++H R K+ + A W+ I + + A + + NGD+ + + Sbjct: 158 LKHVFEQDIANLSIHLRTRKEMSKVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTG 217 Query: 809 KRIKDATGATSVMAARGALWNASIFSPNGKVPWEDFKRE 925 + + G VM RG N F K P E +E Sbjct: 218 LELAEKYGIDGVMIGRGIFHNPFAFE---KEPREHTSKE 253
>Q6GKK9:DUS_STAAR Probable tRNA-dihydrouridine synthase - Staphylococcus aureus| (strain MRSA252) Length = 328 Score = 49.7 bits (117), Expect = 4e-05 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 6/145 (4%) Frame = +2 Query: 467 IDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDT-VEL 643 ID+NMGCP A G GS L+ +P++ +I+ + PV+ K RL D + Sbjct: 99 IDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATKAG-GLPVSVKTRLGYYEIDEWKDW 157 Query: 644 ARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVS-----ALSIPVIANGDVFEYEDF 808 + + + + L++H R K+ + A W+ I + + A + + NGD+ + + Sbjct: 158 LKHVFEQDIANLSIHLRTRKEMSKVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTG 217 Query: 809 KRIKDATGATSVMAARGALWNASIF 883 + + G VM RG N F Sbjct: 218 LELAEKYGIDGVMIGRGIFHNPFAF 242
>Q8CU07:DUS_STAES Probable tRNA-dihydrouridine synthase - Staphylococcus epidermidis| (strain ATCC 12228) Length = 326 Score = 49.3 bits (116), Expect = 5e-05 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 6/159 (3%) Frame = +2 Query: 467 IDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRL-LNTRQDTVEL 643 ID+NMGCP A G GS L+ +PE +I+ + PV+ K RL + + Sbjct: 99 IDLNMGCPVANVAKKGKGSGLILRPETAAEIIQASKAG-GLPVSVKTRLGYYDIDEWRDW 157 Query: 644 ARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVS-----ALSIPVIANGDVFEYEDF 808 + + + + L++H R K+ + A W+ I + + A + + NGD+ + + Sbjct: 158 LKHVFEQDIANLSIHLRTRKEMSKVDAHWELIEAIKTLRDEIAPNTLLTINGDIPDRQTG 217 Query: 809 KRIKDATGATSVMAARGALWNASIFSPNGKVPWEDFKRE 925 + + G +M RG N F K P E +E Sbjct: 218 LELANKYGIDGIMIGRGIFHNPFAFE---KEPREHSSKE 253
>Q5HKD5:DUS_STAEQ Probable tRNA-dihydrouridine synthase - Staphylococcus epidermidis| (strain ATCC 35984 / RP62A) Length = 326 Score = 49.3 bits (116), Expect = 5e-05 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 6/159 (3%) Frame = +2 Query: 467 IDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRL-LNTRQDTVEL 643 ID+NMGCP A G GS L+ +PE +I+ + PV+ K RL + + Sbjct: 99 IDLNMGCPVANVAKKGKGSGLILRPETAAEIIQASKAG-GLPVSVKTRLGYYDIDEWRDW 157 Query: 644 ARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVS-----ALSIPVIANGDVFEYEDF 808 + + + + L++H R K+ + A W+ I + + A + + NGD+ + + Sbjct: 158 LKHVFEQDIANLSIHLRTRKEMSKVDAHWELIEAIKTLRDEIAPNTLLTINGDIPDRQTG 217 Query: 809 KRIKDATGATSVMAARGALWNASIFSPNGKVPWEDFKRE 925 + + G +M RG N F K P E +E Sbjct: 218 LELANKYGIDGIMIGRGIFHNPFAFE---KEPREHSSKE 253
>Q3ZYM9:HIS4_DEHSC 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Dehalococcoides sp. (strain CBDB1) Length = 244 Score = 47.8 bits (112), Expect = 1e-04 Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 7/131 (5%) Frame = +2 Query: 515 MGSALLSKPELIHDILTTLRRNL-------NTPVTCKIRLLNTRQDTVELARRIEKCGVP 673 +G+A + PEL+ +I ++ N V + + NT D +ELAR ++K G+ Sbjct: 109 LGTAAVENPELVKEICARYADSVAVSIDARNGKVATRGWVTNTEIDALELARSMKKLGIR 168 Query: 674 ALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAA 853 ++ +D + I D++SA+++PVIA+G V + +KD + A Sbjct: 169 RF-IYTDISRDGTLSEPNFAAIRDLISAINVPVIASGGVSSLSHLRLLKD-------IGA 220 Query: 854 RGALWNASIFS 886 GA+ +I++ Sbjct: 221 EGAIVGKAIYT 231
>Q87AY2:DUSA_XYLFT tRNA-dihydrouridine synthase A - Xylella fastidiosa (strain| Temecula1 / ATCC 700964) Length = 332 Score = 46.6 bits (109), Expect = 3e-04 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Frame = +2 Query: 389 VVFQMGTSDAVRALKAAEIVCN-DVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILT 565 V Q+G S+ KAA I + + I++N GCP +G G+ L+ +P L+ D + Sbjct: 72 VALQLGGSEPALLAKAASIAVDWGYSEINLNCGCPSDRVQAGSFGACLMREPALVADCVA 131 Query: 566 TLRRNLNTPVTCKIRL-LNTRQDTVELARRIE 658 + ++ PVT K RL +N D A+ ++ Sbjct: 132 AMAAVVSVPVTVKCRLGVNEDDDYGRFAKFVD 163
>Q9PGB5:DUSA_XYLFA tRNA-dihydrouridine synthase A - Xylella fastidiosa| Length = 340 Score = 46.2 bits (108), Expect = 4e-04 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Frame = +2 Query: 389 VVFQMGTSDAVRALKAAEIVCN-DVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILT 565 V Q+G S+ KAA I + + I++N GCP +G G+ L+ +P L+ D + Sbjct: 72 VALQLGGSEPALLAKAARIAVDWGYSEINLNCGCPSDRVQAGSFGARLMREPALVADCVA 131 Query: 566 TLRRNLNTPVTCKIRL-LNTRQDTVELARRIE 658 + ++ PVT K RL +N D A+ ++ Sbjct: 132 AMAAVVSVPVTVKCRLGVNEDDDYGRFAKFVD 163
>Q7UBC5:DUSA_SHIFL tRNA-dihydrouridine synthase A - Shigella flexneri| Length = 330 Score = 45.4 bits (106), Expect = 7e-04 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Frame = +2 Query: 374 QERDRVVFQMGTSDAVRALKAAEIV-CNDVAAIDINMGCPKAFSVSGGMGSALLSKPELI 550 +E V Q+G SD + A++ I++N+GCP +G G+ L+ +L+ Sbjct: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 Query: 551 HDILTTLRRNLNTPVTCKIRLLNTRQDTVE 640 D + +R ++ PVT K R+ QD+ E Sbjct: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYE 150
>Q7VNV2:DUSA_HAEDU tRNA-dihydrouridine synthase A - Haemophilus ducreyi| Length = 323 Score = 45.4 bits (106), Expect = 7e-04 Identities = 57/253 (22%), Positives = 103/253 (40%), Gaps = 14/253 (5%) Frame = +2 Query: 164 YRNKLVLAPMVRAGTLPFRLLAAEYGAD-ITYGEEIIDHKFVHCQRVTNESLGTTDFLER 340 YR + +APM+ T R ++ + Y E I +H + D LE Sbjct: 6 YRGRFAVAPMLDWTTRHCRYFHRQFSQQALLYTEMITAPAILHAKY---------DLLEY 56 Query: 341 GTDSVVFRTCPQERDRVVFQMGTSDAVRALKAAEIV-CNDVAAIDINMGCPKAFSVSGGM 517 P E+ V Q+G SD + A++V I++N+GCP +G Sbjct: 57 D---------PAEQP-VALQLGGSDPTQLANCAKLVQARGYTEINLNVGCPSDRVQNGMF 106 Query: 518 GSALLSKPELIHDILTTLRRNLNTPVTCKIRL-LNTRQDTVELARRIEKCGVPA--LAVH 688 G+ L++ +L+ D + ++ ++ PVT K R+ ++T L I+K + VH Sbjct: 107 GACLMANADLVADCIKAMQDVVDIPVTIKHRIGIDTLDSYAFLCDFIDKIQPYSQDFIVH 166 Query: 689 GRKV--------KDRPRDPAKWDEIADVVSAL-SIPVIANGDVFEYEDFKRIKDATGATS 841 RK ++R P ++ + + + + NG + ++ K + T Sbjct: 167 ARKAWLSGLSPKENREIPPLDYERVYQLKRDFPQLNISINGGIKTIDEIK--QHLTKVDG 224 Query: 842 VMAARGALWNASI 880 VM R A N ++ Sbjct: 225 VMVGREAYQNPAL 237
>P32695:DUSA_ECOLI tRNA-dihydrouridine synthase A - Escherichia coli| Length = 330 Score = 45.4 bits (106), Expect = 7e-04 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Frame = +2 Query: 374 QERDRVVFQMGTSDAVRALKAAEIV-CNDVAAIDINMGCPKAFSVSGGMGSALLSKPELI 550 +E V Q+G SD + A++ I++N+GCP +G G+ L+ +L+ Sbjct: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 Query: 551 HDILTTLRRNLNTPVTCKIRLLNTRQDTVE 640 D + +R ++ PVT K R+ QD+ E Sbjct: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYE 150
>Q8FB30:DUSA_ECOL6 tRNA-dihydrouridine synthase A - Escherichia coli O6| Length = 331 Score = 45.4 bits (106), Expect = 7e-04 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Frame = +2 Query: 374 QERDRVVFQMGTSDAVRALKAAEIV-CNDVAAIDINMGCPKAFSVSGGMGSALLSKPELI 550 +E V Q+G SD + A++ I++N+GCP +G G+ L+ +L+ Sbjct: 62 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 121 Query: 551 HDILTTLRRNLNTPVTCKIRLLNTRQDTVE 640 D + +R ++ PVT K R+ QD+ E Sbjct: 122 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYE 151
>Q8X5V6:DUSA_ECO57 tRNA-dihydrouridine synthase A - Escherichia coli O157:H7| Length = 330 Score = 45.4 bits (106), Expect = 7e-04 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Frame = +2 Query: 374 QERDRVVFQMGTSDAVRALKAAEIV-CNDVAAIDINMGCPKAFSVSGGMGSALLSKPELI 550 +E V Q+G SD + A++ I++N+GCP +G G+ L+ +L+ Sbjct: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 Query: 551 HDILTTLRRNLNTPVTCKIRLLNTRQDTVE 640 D + +R ++ PVT K R+ QD+ E Sbjct: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYE 150
>Q884G7:DUSA_PSESM tRNA-dihydrouridine synthase A - Pseudomonas syringae pv. tomato| Length = 336 Score = 45.1 bits (105), Expect = 0.001 Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 14/148 (9%) Frame = +2 Query: 389 VVFQMGTSDAVRALKAAEIV-CNDVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILT 565 + Q+G S A A + +++N+GCP + +G+ L++ P+L+ D + Sbjct: 74 LALQLGGSTAAGLAACARLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVK 133 Query: 566 TLRRNLNTPVTCKIRL-LNTRQDTVEL---ARRIEKCGVPALAVHGR--------KVKDR 709 +R + PVT K R+ +N R EL + G + VH R ++R Sbjct: 134 AMRDAVGIPVTVKHRIGINGRDSYAELCDFVGTVHDAGCQSFTVHARIAILEGLSPKENR 193 Query: 710 PRDPAKWDEIADVVSAL-SIPVIANGDV 790 P ++D +A + + + ++ NG + Sbjct: 194 DIPPLRYDVVAQLKTDFPELEIVLNGGI 221
>Q88KX0:DUSA_PSEPK tRNA-dihydrouridine synthase A - Pseudomonas putida (strain KT2440)| Length = 336 Score = 45.1 bits (105), Expect = 0.001 Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 4/80 (5%) Frame = +2 Query: 467 IDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRL-LNTRQDTVEL 643 +++N+GCP + +G+ L++ P L+ D + +R ++TPVT K R+ +N R EL Sbjct: 101 VNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVSTPVTVKHRIGINGRDSYAEL 160 Query: 644 A---RRIEKCGVPALAVHGR 694 + ++ + G + VH R Sbjct: 161 SDFVGQVREAGCRSFTVHAR 180
>P44794:DUSA_HAEIN tRNA-dihydrouridine synthase A - Haemophilus influenzae| Length = 327 Score = 45.1 bits (105), Expect = 0.001 Identities = 44/197 (22%), Positives = 81/197 (41%), Gaps = 22/197 (11%) Frame = +2 Query: 377 ERDRVVFQMGTSDAVRALKAAEIVCN-DVAAIDINMGCPKAFSVSGGMGSALLSKPELIH 553 + + V Q+G SD + A++ I++N+GCP +G G+ L++K +L+ Sbjct: 62 QENPVALQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVA 121 Query: 554 DILTTLRRNLNTPVTCKIRL----LNTRQDTVELARRIEKCGVPALAVHGRKVKDRPRDP 721 D + ++ + PVT K R+ L++ + + +++ G +H RK P Sbjct: 122 DCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSP 181 Query: 722 AKWDEI--ADVVSALS-------IPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNA 874 + EI D + + + NG + E+ K + VM R A N Sbjct: 182 KENREIPPLDYIRVYQLKRDFPHLTIAINGGIKTIEEMK--QHLQYVDGVMVGREAYQNP 239 Query: 875 S--------IFSPNGKV 901 S +F PN + Sbjct: 240 SLLGQIDQALFDPNAPI 256
>Q8PFF8:DUSA_XANAC tRNA-dihydrouridine synthase A - Xanthomonas axonopodis pv. citri| Length = 334 Score = 44.7 bits (104), Expect = 0.001 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 14/172 (8%) Frame = +2 Query: 389 VVFQMGTSDAVRALKAAEIVCN-DVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILT 565 + Q+G SD +AA I I++N GCP +G G+ L+ +P L+ + + Sbjct: 68 LALQLGGSDPALLAQAAAIAQEWGFDEINLNCGCPSDRVQAGRFGACLMREPALVAECVA 127 Query: 566 TLRRNLNTPVTCKIRL-LNTRQDTVELARRIEK---CGVPALAVHGRKV--------KDR 709 + + P+T K RL ++ D AR +++ G + VH R ++R Sbjct: 128 AMCAATHLPITVKCRLGVDDDDDYALFARFVDQVVAAGAAMVVVHARNAWLKGLSPKENR 187 Query: 710 PRDPAKWDEIADVVSAL-SIPVIANGDVFEYEDFKRIKDATGATSVMAARGA 862 P ++D + +PV+ NG + E I A VM R A Sbjct: 188 EVPPLRYDWAYRLKQERPGLPVVLNGGIVAVE--PAIAHLQHADGVMLGRAA 237
>Q3Z6V7:HIS4_DEHE1 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Dehalococcoides ethenogenes (strain 195) Length = 237 Score = 44.3 bits (103), Expect = 0.002 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 7/131 (5%) Frame = +2 Query: 515 MGSALLSKPELIHDILTTLRRNL-------NTPVTCKIRLLNTRQDTVELARRIEKCGVP 673 +G+ + PEL+ +I ++ N V + + +T D +ELAR ++K GV Sbjct: 102 LGTVAVENPELVREICARYADSVAVSIDARNGKVATRGWVNSTEVDALELARSMKKLGVK 161 Query: 674 ALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAA 853 ++ +D + I D++SA+++PVIA+G V + +KD + A Sbjct: 162 RF-IYTDISRDGTLSEPNFAAIRDLISAINMPVIASGGVSSLSHLRLLKD-------IGA 213 Query: 854 RGALWNASIFS 886 GA+ +I++ Sbjct: 214 EGAIVGKAIYT 224
>Q8ZKH4:DUSA_SALTY tRNA-dihydrouridine synthase A - Salmonella typhimurium| Length = 332 Score = 43.9 bits (102), Expect = 0.002 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Frame = +2 Query: 374 QERDRVVFQMGTSDAVRALKAAEIV-CNDVAAIDINMGCPKAFSVSGGMGSALLSKPELI 550 +E V Q+G SD + A++ I++N+GCP +G G+ L+ +L+ Sbjct: 63 EEEHPVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 122 Query: 551 HDILTTLRRNLNTPVTCKIRLLNTRQDT 634 D + +R ++ PVT K R+ QD+ Sbjct: 123 ADCVKAMRDVVSIPVTVKTRIGIDDQDS 150
>Q8Z1T1:DUSA_SALTI tRNA-dihydrouridine synthase A - Salmonella typhi| Length = 332 Score = 43.9 bits (102), Expect = 0.002 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Frame = +2 Query: 374 QERDRVVFQMGTSDAVRALKAAEIV-CNDVAAIDINMGCPKAFSVSGGMGSALLSKPELI 550 +E V Q+G SD + A++ I++N+GCP +G G+ L+ +L+ Sbjct: 63 EEEHPVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 122 Query: 551 HDILTTLRRNLNTPVTCKIRLLNTRQDT 634 D + +R ++ PVT K R+ QD+ Sbjct: 123 ADCVKAMRDVVSIPVTVKTRIGIDDQDS 150
>P96192:DUSC_AZOVI tRNA-dihydrouridine synthase C - Azotobacter vinelandii| Length = 309 Score = 43.5 bits (101), Expect = 0.003 Identities = 40/141 (28%), Positives = 56/141 (39%), Gaps = 14/141 (9%) Frame = +2 Query: 401 MGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRN 580 +G+ A A AA AID+N GCP S + G D + RN Sbjct: 70 LGSDPACLAENAALAAELGAPAIDLNFGCPAKTSTARGA------------DGCCSTSRN 117 Query: 581 LNTPVTCKI-----RLLNTRQDTVELA---------RRIEKCGVPALAVHGRKVKDRPRD 718 P + + R RQD + R + + GV L VH R + R Sbjct: 118 CCMPSSARCAGPCRRCAGDRQDAPGVRPARGRPGVRRALVEGGVAHLVVHARTKVEGYRP 177 Query: 719 PAKWDEIADVVSALSIPVIAN 781 PA W+ +A V A+++PV AN Sbjct: 178 PASWEWLARVREAVAVPVYAN 198
>Q8P3X4:DUSA_XANCP tRNA-dihydrouridine synthase A - Xanthomonas campestris pv.| campestris Length = 335 Score = 43.5 bits (101), Expect = 0.003 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 14/152 (9%) Frame = +2 Query: 389 VVFQMGTSDAVRALKAAEIV-CNDVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILT 565 + Q+G SD +AA+I I++N GCP +G G+ L+ +P L+ D + Sbjct: 69 LALQLGGSDPALLAQAAQIAQAWGYDEINLNCGCPSDRVQAGRFGACLMREPALVADCVA 128 Query: 566 TLRRNLNTPVTCKIRL-LNTRQDTVELARRIEK---CGVPALAVHGRKV--------KDR 709 + PVT K RL ++ D A I++ G + VH R ++R Sbjct: 129 AMCAATALPVTVKCRLGVDDDDDYAVFAGFIDQVVGAGAAMVVVHARNAWLKGLSPKENR 188 Query: 710 PRDPAKWDEIADVVSAL-SIPVIANGDVFEYE 802 P ++D + ++PV+ NG + E Sbjct: 189 EVPPLRYDWAYRLKQERPALPVVLNGGIASVE 220
>Q8PW56:PYRD_METMA Dihydroorotate dehydrogenase - Methanosarcina mazei (Methanosarcina| frisia) Length = 314 Score = 41.6 bits (96), Expect = 0.010 Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 18/163 (11%) Frame = +2 Query: 464 AIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIR--------LLN 619 A ++N+ CP A G G+A+ S P L+ + ++ +N PV K+ + N Sbjct: 132 AFELNVSCPHA----EGYGAAIGSNPCLVEAVTAAVKDVVNVPVWVKLTPNVADITCIGN 187 Query: 620 TRQ----DTVELARRIE------KCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIP 769 + D V ++ + G P L + + P + D+ +AL IP Sbjct: 188 AAESGGADAVVAINTVKGMAIDIESGYPVLGNRSGGLSGKAVKPVAVKCVYDLFTALEIP 247 Query: 770 VIANGDVFEYEDFKRIKDATGATSVMAARGALWNASIFSPNGK 898 VI G V +ED + A GA +V IFS GK Sbjct: 248 VIGVGGVSSWEDAVEMIMA-GAAAVQVGSAVYDRVGIFSEIGK 289
>Q8TT55:PYRD_METAC Dihydroorotate dehydrogenase - Methanosarcina acetivorans| Length = 311 Score = 41.2 bits (95), Expect = 0.013 Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 18/162 (11%) Frame = +2 Query: 464 AIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIR--------LLN 619 A+++N+ CP A G G+A+ S P L+ + ++ +N PV K+ + N Sbjct: 129 ALELNVSCPHA----EGYGAAVGSNPCLVEAVTAAVKDVVNVPVWVKLTPNVADITCIGN 184 Query: 620 TRQ----DTVELARRIE------KCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIP 769 + D V ++ + G P L + + P + D+ +AL IP Sbjct: 185 AAESGGADAVVAINTVKGMAIDIESGYPVLGNRSGGLSGKAVKPVAVKCVYDLYTALEIP 244 Query: 770 VIANGDVFEYEDFKRIKDATGATSVMAARGALWNASIFSPNG 895 VI G V +ED + A GA +V IFS G Sbjct: 245 VIGVGGVSSWEDAVELMMA-GAAAVQVGSAVYDRVDIFSEIG 285
>Q8ZJ14:DUSA_YERPE tRNA-dihydrouridine synthase A - Yersinia pestis| Length = 345 Score = 41.2 bits (95), Expect = 0.013 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 24/195 (12%) Frame = +2 Query: 389 VVFQMGTSDAVRALKAAEIV-CNDVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILT 565 V Q+G SD A++ I++N+GCP +G G+ L+ + +L+ D + Sbjct: 75 VALQLGGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQNGRFGACLMGEADLVADCIK 134 Query: 566 TLRRNLNTPVTCKIRL----LNTRQDTVELARRIEKCG-VPALAVHGRKV--------KD 706 +R + PVT K R+ L++ + E + + + G +H RK ++ Sbjct: 135 AMRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSPKEN 194 Query: 707 RPRDPAKWDEIADVVSAL-SIPVIANGDVFEYEDFK-RIKDATGATSVMAARGALWNASI 880 R P ++ + + ++ + NG V + K +K G VM R A N I Sbjct: 195 REVPPLDYERVYQLKRDFPALTIAINGGVKTLAEAKEHLKHLDG---VMMGREAYQNPGI 251 Query: 881 --------FSPNGKV 901 F PN V Sbjct: 252 LTQVDRELFDPNAPV 266
>Q9HL35:PYRD_THEAC Dihydroorotate dehydrogenase - Thermoplasma acidophilum| Length = 300 Score = 40.8 bits (94), Expect = 0.017 Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Frame = +2 Query: 464 AIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVEL 643 A+++N+ CP G G + S P+L+ DI+ ++ ++ PV K L D +E+ Sbjct: 121 AVELNLSCPHV----KGFGLEVGSDPDLVEDIVNEMKSKISVPVFAK--LSPNVSDIIEI 174 Query: 644 ARRIEKCGVPAL--AVHGRKVKDRPRDPAKWDEIADVVSALSIPVIAN-GDVFEYEDFKR 814 A+ EK L V K+ R R P + + LS P I G + YE K Sbjct: 175 AKAAEKADAYVLINTVKAMKIDIRARMPV----LTNAYGGLSGPAIKPVGVRYVYEVKKE 230 Query: 815 I-KDATGATSVMAARGAL 865 KD G + A+ Sbjct: 231 TGKDIIGVGGITTYEDAV 248
>Q1GEZ5:HIS42_SILST 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase 2 - Silicibacter sp. (strain TM1040) Length = 240 Score = 40.4 bits (93), Expect = 0.023 Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 7/129 (5%) Frame = +2 Query: 515 MGSALLSKPELIHDILTTLRRNL-------NTPVTCKIRLLNTRQDTVELARRIEKCGVP 673 +G+ + P+L+ + + N V K T + +LA+ E GV Sbjct: 102 LGTVAVENPDLVREAARAFPGKVAVGIDARNGKVATKGWAEETDVEVTDLAKSFEDAGVA 161 Query: 674 ALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAA 853 A+ ++ ++D D A + +A+SIPVIA+G V ED +K A + + Sbjct: 162 AI-IYTDIMRDGAMKGPNIDATAALANAVSIPVIASGGVSSLEDLHALKSCGAALNGAIS 220 Query: 854 RGALWNASI 880 AL++ +I Sbjct: 221 GRALYDGAI 229
>Q3IT10:HIS4_NATPD 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) Length = 239 Score = 40.0 bits (92), Expect = 0.029 Identities = 28/77 (36%), Positives = 39/77 (50%) Frame = +2 Query: 617 NTRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFE 796 +T D E A R E G + V+ + + DEIA VV A+ IPVIA+G V Sbjct: 146 STGLDPAEAAARYEAEGAGGVLFTDVDVEGQ-LSGVRADEIARVVDAVDIPVIASGGVST 204 Query: 797 YEDFKRIKDATGATSVM 847 D + +KDA A +V+ Sbjct: 205 LSDIEALKDAGAAATVV 221
>Q9A230:HIS4_CAUCR 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Caulobacter crescentus (Caulobacter vibrioides) Length = 241 Score = 40.0 bits (92), Expect = 0.029 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%) Frame = +2 Query: 635 VELARRIEKCGVPALAVHGRKVKDRPRDPA----KWDEIADVVSALSIPVIANGDVFEYE 802 ++L+RR E GV AL + D RD A + + ++ A+SIPVIA+G V Sbjct: 149 IDLSRRFEDAGVAALII-----TDISRDGALTGVNVEGVGELADAVSIPVIASGGVAAVA 203 Query: 803 DFKRIKDATGATSVMAARGALWNASIFSPN 892 D +R+K G A G A P+ Sbjct: 204 DIERLKARQGVEIAGAILGRSLYAGTIKPS 233
>Q8FY08:HIS4_BRUSU 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Brucella suis Length = 243 Score = 39.7 bits (91), Expect = 0.038 Identities = 22/66 (33%), Positives = 36/66 (54%) Frame = +2 Query: 620 TRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEY 799 +R +ELA++ E GV A+ ++ +D WD + A+SIPVIA+G + Sbjct: 144 SRLGVIELAKKFEGAGVAAI-IYTDIDRDGVLAGINWDSTLALAEAVSIPVIASGGLASM 202 Query: 800 EDFKRI 817 ED +R+ Sbjct: 203 EDIRRL 208
>Q8YE36:HIS4_BRUME 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Brucella melitensis Length = 243 Score = 39.7 bits (91), Expect = 0.038 Identities = 22/66 (33%), Positives = 36/66 (54%) Frame = +2 Query: 620 TRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEY 799 +R +ELA++ E GV A+ ++ +D WD + A+SIPVIA+G + Sbjct: 144 SRLGVIELAKKFEGAGVAAI-IYTDIDRDGVLAGINWDSTLALAEAVSIPVIASGGLASM 202 Query: 800 EDFKRI 817 ED +R+ Sbjct: 203 EDIRRL 208
>Q57AH4:HIS4_BRUAB 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Brucella abortus Length = 243 Score = 39.7 bits (91), Expect = 0.038 Identities = 22/66 (33%), Positives = 36/66 (54%) Frame = +2 Query: 620 TRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEY 799 +R +ELA++ E GV A+ ++ +D WD + A+SIPVIA+G + Sbjct: 144 SRLGVIELAKKFEGAGVAAI-IYTDIDRDGVLAGINWDSTLALAEAVSIPVIASGGLASM 202 Query: 800 EDFKRI 817 ED +R+ Sbjct: 203 EDIRRL 208
>Q2YQY9:HIS4_BRUA2 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Brucella abortus (strain 2308) Length = 243 Score = 39.7 bits (91), Expect = 0.038 Identities = 22/66 (33%), Positives = 36/66 (54%) Frame = +2 Query: 620 TRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEY 799 +R +ELA++ E GV A+ ++ +D WD + A+SIPVIA+G + Sbjct: 144 SRLGVIELAKKFEGAGVAAI-IYTDIDRDGVLAGINWDSTLALAEAVSIPVIASGGLASM 202 Query: 800 EDFKRI 817 ED +R+ Sbjct: 203 EDIRRL 208
>Q82WM5:HIS4_NITEU 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Nitrosomonas europaea Length = 249 Score = 39.3 bits (90), Expect = 0.050 Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 9/131 (6%) Frame = +2 Query: 515 MGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLN-------TRQDTVELARRIEKCGVP 673 +G+A + P +HD + + K + T D ++LA++ + GV Sbjct: 104 IGTAAVKVPGFLHDACYAFPGQIMVGLDAKSGKVAVDGWSKVTGHDVIDLAKKFQDYGVE 163 Query: 674 ALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKD--ATGATSVM 847 A+ +H +D + ++ AL+IPVIA+G V +D +++ + + G T V+ Sbjct: 164 AI-IHTDIGRDGMLSGLNIEATVELAQALTIPVIASGGVTNLDDIRKLCEVQSEGITGVI 222 Query: 848 AARGALWNASI 880 R A++ S+ Sbjct: 223 TGR-AIYQGSL 232
>Q98CT3:HIS4_RHILO 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Rhizobium loti (Mesorhizobium loti) Length = 247 Score = 38.9 bits (89), Expect = 0.066 Identities = 23/61 (37%), Positives = 33/61 (54%) Frame = +2 Query: 635 VELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKR 814 VELAR+ E GV A+ ++ +D WD D+ A+SIPVIA+G + D R Sbjct: 149 VELARKFEGAGVAAI-IYTDIDRDGVLTGINWDATIDLAEAVSIPVIASGGLASIADIVR 207 Query: 815 I 817 + Sbjct: 208 M 208
>Q0AEU2:HIS4_NITEC 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Nitrosomonas eutropha (strain C71) Length = 248 Score = 38.9 bits (89), Expect = 0.066 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Frame = +2 Query: 620 TRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEY 799 T D ++LA++ + GV A+ +H +D + + ++ AL+IPVIA+G V Sbjct: 146 TGHDVIDLAKKFQDYGVEAI-IHTDIGRDGMLNGLNIEATVELAQALTIPVIASGGVTNL 204 Query: 800 EDFKRI--KDATGATSVMAARGALWNASI 880 +D +++ + G T V+ R A++ S+ Sbjct: 205 DDIRKLCQVQSEGITGVITGR-AIYQGSL 232
>Q8PWS2:HIS4_METMA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Methanosarcina mazei (Methanosarcina frisia) Length = 246 Score = 38.9 bits (89), Expect = 0.066 Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 10/121 (8%) Frame = +2 Query: 515 MGSALLSKPELIHDILTTL-RRNLNTPVTCKIRLLNTR-------QDTVELARRIEKCGV 670 +G+A L PEL+ + ++ ++N + K ++ + Q VE+ R+ E+ G Sbjct: 107 LGTAALQNPELVKQLSSSFGSSHVNVALDAKNGKISIKGWTEECAQTPVEMGRKFEELGA 166 Query: 671 PALAVHGRKVKDRPR--DPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSV 844 +L + + +P E+ V ++SIPVIA+G V ED K +K TGA V Sbjct: 167 GSLLFTNIDTEGLMQGVNPVPTKEL---VESVSIPVIASGGVSTLEDIKTLK-KTGAAGV 222 Query: 845 M 847 + Sbjct: 223 V 223
>Q0C639:HIS4_HYPNA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Hyphomonas neptunium (strain ATCC 15444) Length = 241 Score = 38.5 bits (88), Expect = 0.086 Identities = 54/213 (25%), Positives = 81/213 (38%), Gaps = 36/213 (16%) Frame = +2 Query: 350 SVVFRTCPQERDRVVFQMGTS-----DAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGG 514 + VF T P ++ R MG + D A A + N A I P + GG Sbjct: 27 ATVFNTDPADQARAFHAMGFTHLHVVDLNGAFAGAPV--NRAAVEGILKATPAPVQLGGG 84 Query: 515 -------------------MGSALLSKPELIHDILTTLRRNLNTPVTCKIRLL------- 616 +G+ L PEL+ L + + K ++ Sbjct: 85 IRTRAQIDAWLEAGISRVILGTIALRDPELVKTAARALPGRIVVGIDAKDGMVAVEGWAE 144 Query: 617 NTRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDE----IADVVSALSIPVIANG 784 + ELA+ E CGV A+ D RD K A++ A+SIPVIA+G Sbjct: 145 TSDMKATELAKAFEGCGVAAIVA-----TDIGRDGLKTGVNVPFTAELAHAVSIPVIASG 199 Query: 785 DVFEYEDFKRIKDATGATSVMAARG-ALWNASI 880 V + D + +K A+GA + G AL++ I Sbjct: 200 GVRDVNDIRALK-ASGAPIAGSILGRALYDGDI 231
>Q162Q2:HIS4_ROSDO 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans) Length = 239 Score = 38.1 bits (87), Expect = 0.11 Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 9/151 (5%) Frame = +2 Query: 455 DVAAID--INMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQ 628 D+A I+ +N G + +G+ + P+L+ + + + + + T+ Sbjct: 85 DMATIERWLNKGLARVI-----LGTVAVENPDLVREAARAFPDQVAVGIDARNGFVATKG 139 Query: 629 -------DTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGD 787 +LA+ E GV A+ ++ ++D AD+ A+SIPVIA+G Sbjct: 140 WAEETDVQATDLAKSFEDAGVAAI-IYTDILRDGAMGGPNTQATADLARAVSIPVIASGG 198 Query: 788 VFEYEDFKRIKDATGATSVMAARGALWNASI 880 V +D ++D+ + ++ R AL++ +I Sbjct: 199 VSSLDDLLALRDSGVISGAISGR-ALYDGAI 228
>P58790:HIS4_AGRT5 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Agrobacterium tumefaciens (strain C58 / ATCC 33970) Length = 247 Score = 38.1 bits (87), Expect = 0.11 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Frame = +2 Query: 635 VELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKR 814 +ELA+R E GV A+ ++ +D W ++ A+SIPVIA+G + +D KR Sbjct: 149 IELAKRFEGAGVAAI-IYTDIDRDGILAGINWASTLELADAVSIPVIASGGLASIDDIKR 207 Query: 815 IKDATGATSVMAARG-ALWNASI 880 + A A G AL++ I Sbjct: 208 MLQPDAAKLEGAISGRALYDGRI 230
>P74561:HIS4_SYNY3 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Synechocystis sp. (strain PCC 6803) Length = 256 Score = 37.7 bits (86), Expect = 0.15 Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 13/146 (8%) Frame = +2 Query: 515 MGSALLSKPELIHDILTTLRRNL-------NTPVTCKIRLLNTRQDTVELARRIEKCGVP 673 +G+ + P+L+ ++ + N V + L + + ELA+R+EK G Sbjct: 102 LGTIAVENPDLVGELCAEFPGQIVVGIDARNGKVATRGWLETSTVEAGELAQRMEKLGAA 161 Query: 674 ALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRI--KDATGATSVM 847 A+ ++ +D D + + S L+IPVIA+G V + ED + ++ G V+ Sbjct: 162 AI-IYTDIHRDGTMQGPNLDALRQLASQLTIPVIASGGVSQVEDLLNLLSLESLGVNGVI 220 Query: 848 AAR----GALWNASIFSPNGKVPWED 913 + G + A G W+D Sbjct: 221 IGKALYTGDIQLAEAIRAVGNGRWQD 246
>Q46CW8:HIS4_METBF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Methanosarcina barkeri (strain Fusaro / DSM 804) Length = 245 Score = 37.7 bits (86), Expect = 0.15 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 12/123 (9%) Frame = +2 Query: 515 MGSALLSKPELIHDILTTLRRN--------LNTPVTCKIRLLNTRQDTVELARRIEKCGV 670 +G+A L PEL+ + +T N ++ K Q VE+ R+ E+ G Sbjct: 107 LGTAALKNPELVQQLSSTFGNEHVTVALDAKNGKISIKGWTEECAQTPVEMGRKFEELGA 166 Query: 671 PALAVHGRKVKDRPRD----PAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGAT 838 +L + + P K ++V ++SIPVIA+G V +D + +K TGA+ Sbjct: 167 GSLLFTNIDTEGLMQGVNPVPTK-----NLVESVSIPVIASGGVSSLQDLRTLK-KTGAS 220 Query: 839 SVM 847 V+ Sbjct: 221 GVV 223
>Q92TB2:HIS4_RHIME 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Rhizobium meliloti (Sinorhizobium meliloti) Length = 247 Score = 37.4 bits (85), Expect = 0.19 Identities = 21/63 (33%), Positives = 35/63 (55%) Frame = +2 Query: 635 VELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKR 814 VELAR+ E GV A+ ++ +D W ++ A+SIPVIA+G + +D +R Sbjct: 149 VELARKFEGAGVAAI-IYTDIDRDGILTGINWASTLELADAVSIPVIASGGLASMDDIRR 207 Query: 815 IKD 823 + + Sbjct: 208 MTE 210
>Q8R9R7:PYRD_THETN Dihydroorotate dehydrogenase - Thermoanaerobacter tengcongensis| Length = 301 Score = 37.0 bits (84), Expect = 0.25 Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 20/144 (13%) Frame = +2 Query: 434 AAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRL 613 A ++ + I+IN+ CP GGM + P+ I DI +R+ T T ++L Sbjct: 111 AEKLDIEGIEGIEINVSCPNV--KKGGMAFGV--NPDDIFDITRKVRKA--TSKTVIVKL 164 Query: 614 LNTRQDTVELARRIEKCGVPALA----VHGRKV---KDRPR-------------DPAKWD 733 D A+ EK G A++ V G V K RP P Sbjct: 165 TPNVTDIKVCAKAAEKGGADAISLINTVAGMAVDIDKRRPVFENVIGGLSGPAIKPIALK 224 Query: 734 EIADVVSALSIPVIANGDVFEYED 805 + +VV+ +SIPVI G + Y+D Sbjct: 225 MVYEVVTVVSIPVIGMGGIMNYKD 248
>Q1MNC1:HIS4_RHIL3 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Rhizobium leguminosarum bv. viciae (strain 3841) Length = 248 Score = 37.0 bits (84), Expect = 0.25 Identities = 20/61 (32%), Positives = 34/61 (55%) Frame = +2 Query: 635 VELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKR 814 +ELAR+ E GV A+ ++ +D W ++ A+SIPVIA+G + +D +R Sbjct: 149 IELARKFEGAGVAAI-IYTDIDRDGILAGINWSSTLELADAVSIPVIASGGLASLDDIRR 207 Query: 815 I 817 + Sbjct: 208 M 208
>Q2VYI9:HIS4_MAGMM 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) Length = 239 Score = 37.0 bits (84), Expect = 0.25 Identities = 26/74 (35%), Positives = 37/74 (50%) Frame = +2 Query: 635 VELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKR 814 +ELAR+ E CGV AL ++ +D A + A+SIPVIA+G V D K Sbjct: 149 LELARKFEDCGVAAL-IYTDIDRDGVLAGPNVAATAALADAISIPVIASGGVSSLVDLKA 207 Query: 815 IKDATGATSVMAAR 856 +K V++ R Sbjct: 208 LKAYPKLEGVISGR 221
>Q2KE60:HIS4_RHIEC 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Rhizobium etli (strain CFN 42 / ATCC 51251) Length = 248 Score = 36.6 bits (83), Expect = 0.33 Identities = 20/61 (32%), Positives = 33/61 (54%) Frame = +2 Query: 635 VELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKR 814 +ELA++ E GV A+ ++ +D W ++ A+SIPVIA+G + D KR Sbjct: 149 IELAKKFEGAGVAAI-IYTDIDRDGILTGINWSSTLELADAVSIPVIASGGLASLNDIKR 207 Query: 815 I 817 + Sbjct: 208 M 208
>Q8TU55:HIS4_METAC 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Methanosarcina acetivorans Length = 245 Score = 36.6 bits (83), Expect = 0.33 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 10/121 (8%) Frame = +2 Query: 515 MGSALLSKPELIHDILTTLRRNL--------NTPVTCKIRLLNTRQDTVELARRIEKCGV 670 +G+A L PEL+ + + N ++ K Q VE+ R E+ G Sbjct: 107 LGTAALQNPELVKQLSDAFGSSCVNVALDAKNGKISIKGWTEECAQTPVEMGREFEELGA 166 Query: 671 PALAVHGRKVKDRPR--DPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSV 844 +L + + +P E+ V ++SIPVIA+G V ED K +K TGA+ V Sbjct: 167 GSLLFTNIDTEGLMQGVNPGPTREL---VESVSIPVIASGGVSSLEDLKVLKQ-TGASGV 222 Query: 845 M 847 + Sbjct: 223 V 223
>Q2J341:HIS4_RHOP2 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Rhodopseudomonas palustris (strain HaA2) Length = 245 Score = 36.2 bits (82), Expect = 0.42 Identities = 21/59 (35%), Positives = 31/59 (52%) Frame = +2 Query: 635 VELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFK 811 +E+A+R E GV A+ + +D WD + A+SIPVIA+G + ED K Sbjct: 149 LEIAQRFEDAGVAAI-IFTDIARDGLLKGINWDATIALAEAISIPVIASGGLASIEDVK 206
>A1ATI1:HIS4_PELPD 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Pelobacter propionicus (strain DSM 2379) Length = 245 Score = 36.2 bits (82), Expect = 0.42 Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 9/131 (6%) Frame = +2 Query: 515 MGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLN-------TRQDTVELARRIEKCGVP 673 +G+A P+L+ + + + K ++ T V+LAR+ E CGV Sbjct: 102 IGTAAQRNPQLVKEACAKFPGRIVVGIDAKAGMVAVQGWAEVTGITAVDLARKFEDCGVA 161 Query: 674 ALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIK--DATGATSVM 847 A+ ++ +D + + A++IPVIA+G V +D + + + +G T V+ Sbjct: 162 AI-IYTDISRDGMLQGPNIEATRSLAEAVAIPVIASGGVSTLKDIENLMTIERSGVTGVI 220 Query: 848 AARGALWNASI 880 + A++ +I Sbjct: 221 TGK-AIYTGAI 230
>Q5LU97:HIS41_SILPO 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase 1 - Silicibacter pomeroyi Length = 240 Score = 36.2 bits (82), Expect = 0.42 Identities = 23/81 (28%), Positives = 42/81 (51%) Frame = +2 Query: 638 ELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRI 817 +LA+ E GV A+ ++ ++D AD+ A+SIPVIA+G V ED + Sbjct: 150 DLAKSFEDAGVAAI-IYTDILRDGAMKGPNIKATADLARAVSIPVIASGGVSSLEDLIAL 208 Query: 818 KDATGATSVMAARGALWNASI 880 +D + + + AL++ ++ Sbjct: 209 RDCGASLNGAISGRALYDGAL 229
>Q979G6:PYRD_THEVO Dihydroorotate dehydrogenase - Thermoplasma volcanium| Length = 301 Score = 35.8 bits (81), Expect = 0.55 Identities = 21/68 (30%), Positives = 35/68 (51%) Frame = +2 Query: 458 VAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDTV 637 V AI++N+ CP G G + S P+L+ DI+ ++ + PV K L + + Sbjct: 119 VDAIELNLSCPHV----KGFGLEVGSDPDLVEDIVNEIKSKVKVPVFAK--LSPNVSNII 172 Query: 638 ELARRIEK 661 E+A+ EK Sbjct: 173 EIAKAAEK 180
>Q8R885:HIS6_THETN Imidazole glycerol phosphate synthase subunit hisF -| Thermoanaerobacter tengcongensis Length = 253 Score = 35.0 bits (79), Expect = 0.95 Identities = 24/80 (30%), Positives = 40/80 (50%) Frame = +2 Query: 614 LNTRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVF 793 +NT D VE A++++ G + + KD +D + + A+SIPVIA+G Sbjct: 149 INTGLDAVEWAKKVKDLGAGEILLTSMD-KDGTKDGYDIELTRLISEAVSIPVIASGGAG 207 Query: 794 EYEDFKRIKDATGATSVMAA 853 + E FK + A + +AA Sbjct: 208 KPEHFKEVFTQGKADAALAA 227
>Q2YAU9:HIS4_NITMU 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) Length = 257 Score = 35.0 bits (79), Expect = 0.95 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 7/108 (6%) Frame = +2 Query: 515 MGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLN-------TRQDTVELARRIEKCGVP 673 +G+A + P +HD ++ + K + T D V+LA++ E GV Sbjct: 104 IGTAAVKTPGFLHDACNAFPGHIMVGLDAKDGKVAVNGWSKVTGHDVVDLAKKFEDYGVE 163 Query: 674 ALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRI 817 A+ ++ +D ++ AL+IPVIA+G V +D K + Sbjct: 164 AI-IYTDIGRDGMLSGVNLKATLELARALTIPVIASGGVSSLDDVKAL 210
>Q1H4R3:HIS4_METFK 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) Length = 247 Score = 35.0 bits (79), Expect = 0.95 Identities = 23/80 (28%), Positives = 39/80 (48%) Frame = +2 Query: 620 TRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEY 799 T D ++LA++ E GV A+ V+ +D + + AL+IPVIA+G V Sbjct: 146 TGHDVIDLAKKFEDYGVEAV-VYTDIGRDGMLTGVNIEATVALAQALTIPVIASGGVTNL 204 Query: 800 EDFKRIKDATGATSVMAARG 859 +D +R+ + + A G Sbjct: 205 DDVRRLAEVESEGIIGAITG 224
>Q28NK3:HIS4_JANSC 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Jannaschia sp. (strain CCS1) Length = 238 Score = 35.0 bits (79), Expect = 0.95 Identities = 26/81 (32%), Positives = 40/81 (49%) Frame = +2 Query: 638 ELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRI 817 +LAR E GV A+ ++ +D AD+ A SIPVIA+G V +D + Sbjct: 150 DLARAFEDAGVAAI-IYTDIDRDGAMGGPNVSATADLARATSIPVIASGGVSSLDDLHAL 208 Query: 818 KDATGATSVMAARGALWNASI 880 K TG S + AL++ ++ Sbjct: 209 K-TTGVISGAISGRALYDGAL 228
>Q9I048:DUSA_PSEAE tRNA-dihydrouridine synthase A - Pseudomonas aeruginosa| Length = 332 Score = 35.0 bits (79), Expect = 0.95 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%) Frame = +2 Query: 467 IDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRL-LNTRQDTVEL 643 +++N+GCP +G+ L+ P L+ D + + + VT K R+ +N R EL Sbjct: 97 VNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTVKHRIGINGRDSYAEL 156 Query: 644 ---ARRIEKCGVPALAVHGR 694 ++ + G + VH R Sbjct: 157 CDFVGQVREAGCRSFTVHAR 176
>Q921L5:COG2_MOUSE Conserved oligomeric Golgi complex component 2 - Mus musculus (Mouse)| Length = 731 Score = 28.5 bits (62), Expect(2) = 1.4 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = +3 Query: 1134 LLTSHVTQLLLGSLCWFCECFLWRSLHEFWR 1226 LL SH T + LG CW E FL H WR Sbjct: 416 LLASHRTWISLGK-CWSDEMFLPLLAHRLWR 445 Score = 24.6 bits (52), Expect(2) = 1.4 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = +2 Query: 1040 KCGSSADVARLYGEEDYYNF 1099 +CGS A V RL Y+NF Sbjct: 357 QCGSQASVKRLRAHPAYHNF 376
>Q97KH8:HIS6_CLOAB Imidazole glycerol phosphate synthase subunit hisF - Clostridium| acetobutylicum Length = 253 Score = 34.3 bits (77), Expect = 1.6 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 14/127 (11%) Frame = +2 Query: 515 MGSALLSKPELIHD-----------ILTTLRRNLNTP---VTCKIRLLNTRQDTVELARR 652 + SA + PELI++ + RRN+ T V ++T D +E ++ Sbjct: 102 INSAAIRNPELINEAAKKFGSQCVVVAVDARRNIETGGFNVFINGGRVDTSLDAIEWVKK 161 Query: 653 IEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATG 832 E G + + D ++ + V A+ IPVIA+G EDF I T Sbjct: 162 CESLGAGEILLTSMDA-DGTKNGYDVELTGAVCDAVRIPVIASGGCGRLEDFDEIFKKTS 220 Query: 833 ATSVMAA 853 A + + A Sbjct: 221 ADAALVA 227
>Q3SEU7:HIS4_THIDA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Thiobacillus denitrificans (strain ATCC 25259) Length = 251 Score = 34.3 bits (77), Expect = 1.6 Identities = 23/64 (35%), Positives = 33/64 (51%) Frame = +2 Query: 620 TRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEY 799 T D V+LA+R E GV A+ ++ +D D + ALSIPVIA+G V Sbjct: 146 TGHDVVDLAKRFEGYGVEAV-IYTDIGRDGMLTGVNIDATQRLAQALSIPVIASGGVTNL 204 Query: 800 EDFK 811 +D + Sbjct: 205 DDVR 208
>P60582:HIS4_RHOPA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Rhodopseudomonas palustris Length = 245 Score = 34.3 bits (77), Expect = 1.6 Identities = 19/61 (31%), Positives = 32/61 (52%) Frame = +2 Query: 635 VELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKR 814 +++A+R E GV A+ + +D WD + A+SIPVIA+G + ED + Sbjct: 149 LDIAQRFEDAGVAAI-IFTDIARDGLLKGINWDATIALAEAISIPVIASGGLASIEDVRT 207 Query: 815 I 817 + Sbjct: 208 L 208
>Q18C71:HIS4_CLOD6 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Clostridium difficile (strain 630) Length = 240 Score = 34.3 bits (77), Expect = 1.6 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 7/109 (6%) Frame = +2 Query: 515 MGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQ-------DTVELARRIEKCGVP 673 +GS + L+ +++ + + + K + R D++ L +++EK GV Sbjct: 102 LGSIAIENLNLVEELVNEYKEKIVVSIDAKDGKVAVRGWEVVSNVDSLTLCKQLEKIGVQ 161 Query: 674 ALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIK 820 + V+ KD +D + S+ VIA+G V ED KR+K Sbjct: 162 TI-VYTDISKDGMLQGPNFDIYERIAKETSLNVIASGGVTSIEDVKRLK 209
>O33774:HIS6_SULSO Imidazole glycerol phosphate synthase subunit hisF - Sulfolobus| solfataricus Length = 251 Score = 33.9 bits (76), Expect = 2.1 Identities = 24/90 (26%), Positives = 43/90 (47%) Frame = +2 Query: 584 NTPVTCKIRLLNTRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALS 763 N V K NTR D ++ A+++E+ G + + +D R + +V +++ Sbjct: 137 NWIVFTKSGTYNTRLDAIKWAKKVEELGAGEILLTSID-RDGTRLGYDLELTRKIVDSVN 195 Query: 764 IPVIANGDVFEYEDFKRIKDATGATSVMAA 853 IPVIA+G + E F + A + +AA Sbjct: 196 IPVIASGGAGKMEHFYEVFSLAKADAALAA 225
>A0B7W4:HIS4_METTP 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Methanosaeta thermophila (strain DSM 6194 / PT) (Methanothrix thermophila (strain DSM 6194 / PT)) Length = 242 Score = 33.9 bits (76), Expect = 2.1 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Frame = +2 Query: 629 DTVELARRIEKCGVPALAVHGRKVKDRPR--DPAKWDEIADVVSALSIPVIANGDVFEYE 802 D +EL E G ++ + + R DP + ++V A+SIPVIA G V + Sbjct: 150 DAIELGIVFESFGAGSILFTNIDTEGQQRGVDP---EPTRELVEAVSIPVIAAGGVSSLD 206 Query: 803 DFKRIKDATGATSVM 847 D K + DA A +V+ Sbjct: 207 DIKLLSDAGAAGAVI 221
>Q11CK8:HIS4_MESSB 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Mesorhizobium sp. (strain BNC1) Length = 244 Score = 33.9 bits (76), Expect = 2.1 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%) Frame = +2 Query: 638 ELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRI 817 ELA+R E GV A+ ++ +D W+ + A+SIP+IA+G + D +R+ Sbjct: 150 ELAKRFEGAGVAAI-IYTDIDRDGVLTGINWEATIALADAVSIPIIASGGLASMADIERM 208 Query: 818 --KDATGATSVMAARGALWNASI 880 DA ++ R AL++ I Sbjct: 209 VKPDAAKLEGAISGR-ALYDGRI 230
>A1WW06:HIS4_HALHL 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Halorhodospira halophila (strain DSM 244 / SL1) (Ectothiorhodospira halophila (strain DSM 244 / SL1)) Length = 246 Score = 33.9 bits (76), Expect = 2.1 Identities = 22/61 (36%), Positives = 32/61 (52%) Frame = +2 Query: 635 VELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKR 814 V+LARR E GV AL + +D + ++ A+SIPVIA+G V ED + Sbjct: 150 VDLARRFEDAGVAAL-IFTDIGRDGMMQGCNVEATRELARAVSIPVIASGGVSSLEDVRS 208 Query: 815 I 817 + Sbjct: 209 L 209
>Q0A5D2:HIS4_ALHEH 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Alkalilimnicola ehrlichei (strain MLHE-1) Length = 248 Score = 33.9 bits (76), Expect = 2.1 Identities = 23/66 (34%), Positives = 34/66 (51%) Frame = +2 Query: 635 VELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKR 814 V+LARR E GV A+ V +D + ++ A++IPVIA+G V ED + Sbjct: 150 VDLARRFEAAGVNAI-VFTDIGRDGMMKGVNIEATRELARAITIPVIASGGVSSLEDVRA 208 Query: 815 IKDATG 832 + A G Sbjct: 209 LCAAAG 214
>Q8BJ34:LKAP_MOUSE Limkain-b1 - Mus musculus (Mouse)| Length = 1730 Score = 33.5 bits (75), Expect = 2.8 Identities = 28/79 (35%), Positives = 41/79 (51%) Frame = +2 Query: 1019 PEGKGVIKCGSSADVARLYGEEDYYNFVVSNRK*TKQDFANLSCDPASAWIPLLVLRMFS 1198 P G GSS++ + + EE Y+ V + + +DF+ L DP S IP +VL S Sbjct: 937 PLGSSQSHDGSSSNCSPVLFEELEYHEPVCKQHCSNKDFSELVFDPDSYKIPFVVL---S 993 Query: 1199 LEVFA*VLEKFIYHQTIQG 1255 L+VFA + + QT QG Sbjct: 994 LKVFAPQVHSLL--QTHQG 1010
>Q39YP2:HIS6_GEOMG Imidazole glycerol phosphate synthase subunit hisF - Geobacter| metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) Length = 253 Score = 33.5 bits (75), Expect = 2.8 Identities = 25/75 (33%), Positives = 37/75 (49%) Frame = +2 Query: 629 DTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDF 808 D VE ARR+E+ G + + +D +D +V A+SIPVIA+G V E Sbjct: 154 DAVEWARRMEEYGAGEILLTSMD-RDGTKDGYDISLTRAIVDAVSIPVIASGGVGNLEHL 212 Query: 809 KRIKDATGATSVMAA 853 GA++ +AA Sbjct: 213 HDGFVKAGASACLAA 227
>Q13E39:HIS4_RHOPS 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Rhodopseudomonas palustris (strain BisB5) Length = 245 Score = 33.5 bits (75), Expect = 2.8 Identities = 19/61 (31%), Positives = 32/61 (52%) Frame = +2 Query: 635 VELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKR 814 +E+A+R E GV A+ + +D W+ + A+SIPVIA+G + +D K Sbjct: 149 LEIAQRFEDAGVAAI-IFTDIARDGLLKGINWEATIALAEAVSIPVIASGGLASIDDVKA 207 Query: 815 I 817 + Sbjct: 208 L 208
>Q7VZ72:UBID_BORPE 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - Bordetella pertussis| Length = 514 Score = 33.1 bits (74), Expect = 3.6 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 12/100 (12%) Frame = +2 Query: 614 LNTRQDTVELARRIEKCGVPALAVHGRKVKDRPRD------------PAKWDEIADVVSA 757 ++TR + E+A R+ + G PAL + D P D W AD V A Sbjct: 26 VSTRLEMTEIADRVLRAGGPALLFENARHNDAPADMPVLANLFGTPRRVAWGMGADDVGA 85 Query: 758 LSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNAS 877 L + E E K ++DA S++ A ALW+ S Sbjct: 86 LRETGELLASLREPEAPKGLRDALAKVSMLKA--ALWDMS 123
>Q7WB52:UBID_BORPA 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - Bordetella| parapertussis Length = 514 Score = 33.1 bits (74), Expect = 3.6 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 12/100 (12%) Frame = +2 Query: 614 LNTRQDTVELARRIEKCGVPALAVHGRKVKDRPRD------------PAKWDEIADVVSA 757 ++TR + E+A R+ + G PAL + D P D W AD V A Sbjct: 26 VSTRLEMTEIADRVLRAGGPALLFENARHNDAPADMPVLANLFGTPRRVAWGMGADDVGA 85 Query: 758 LSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNAS 877 L + E E K ++DA S++ A ALW+ S Sbjct: 86 LRETGELLASLREPEAPKGLRDALAKVSMLKA--ALWDMS 123
>Q7WML9:UBID_BORBR 3-octaprenyl-4-hydroxybenzoate carboxy-lyase - Bordetella| bronchiseptica (Alcaligenes bronchisepticus) Length = 514 Score = 33.1 bits (74), Expect = 3.6 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 12/100 (12%) Frame = +2 Query: 614 LNTRQDTVELARRIEKCGVPALAVHGRKVKDRPRD------------PAKWDEIADVVSA 757 ++TR + E+A R+ + G PAL + D P D W AD V A Sbjct: 26 VSTRLEMTEIADRVLRAGGPALLFENARHNDAPADMPVLANLFGTPRRVAWGMGADDVGA 85 Query: 758 LSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNAS 877 L + E E K ++DA S++ A ALW+ S Sbjct: 86 LRETGELLASLREPEAPKGLRDALAKVSMLKA--ALWDMS 123
>Q9S2T7:HIS6_STRCO Imidazole glycerol phosphate synthase subunit hisF - Streptomyces| coelicolor Length = 251 Score = 33.1 bits (74), Expect = 3.6 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 13/127 (10%) Frame = +2 Query: 512 GMGSALLSKPELIHDILTTLRRNL-------------NTPVTCKIRLLNTRQDTVELARR 652 G+ +A +++P+LI +I R + VT T D VE A R Sbjct: 102 GVNTAAIARPDLIREIAERFGRQVLVLSVDARRTEAGTFEVTTHGGRRGTGIDAVEWAHR 161 Query: 653 IEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATG 832 + G + ++ D +D + +A V +S+PVIA+G F +A G Sbjct: 162 AAELGAGEILLNSMDA-DGTKDGYDLEMLAAVRKHVSVPVIASGGAGSLAHFAPAVEA-G 219 Query: 833 ATSVMAA 853 A +V+AA Sbjct: 220 ADAVLAA 226
>Q1I3G7:HIS4_PSEE4 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Pseudomonas entomophila (strain L48) Length = 245 Score = 33.1 bits (74), Expect = 3.6 Identities = 24/75 (32%), Positives = 34/75 (45%) Frame = +2 Query: 635 VELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKR 814 ++LA+R E GV A+ V+ KD + A SIPVIA+G + D K Sbjct: 150 IDLAKRFEADGVSAI-VYTDIAKDGMMQGCNVPFTKALAEATSIPVIASGGIHNLGDIKA 208 Query: 815 IKDATGATSVMAARG 859 + DA + A G Sbjct: 209 LLDAKAPGIIGAITG 223
>Q3A136:HIS4_PELCD 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) Length = 243 Score = 33.1 bits (74), Expect = 3.6 Identities = 37/169 (21%), Positives = 74/169 (43%), Gaps = 13/169 (7%) Frame = +2 Query: 413 DAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGG----MGSALLSKPELIHDILTTLRRN 580 DA+RA+ A + ++ ++ +A+ G +G+ PEL+ + Sbjct: 64 DAIRAIAEAVSIPTELGGGIRDLPTIEAYLELGIDRVILGTVAKENPELVREACRLFPGR 123 Query: 581 LNTPVTCKIRLLNTR-------QDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEI 739 + + + L+ R + ELA+ +E GV A+ ++ +D + Sbjct: 124 IVVGIDARDGLVAVRGWADVTEKLATELAKEMEGFGVEAI-IYTDIARDGMMGGPNLEAT 182 Query: 740 ADVVSALSIPVIANGDVFEYEDFKRIK--DATGATSVMAARGALWNASI 880 + ++S+PVIA+G V ED R+ + +G T V+ + AL+ S+ Sbjct: 183 RALAESISVPVIASGGVSCLEDIARLMTIEDSGVTGVITGK-ALYTGSL 230
>Q47AM2:HIS4_DECAR 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Dechloromonas aromatica (strain RCB) Length = 246 Score = 33.1 bits (74), Expect = 3.6 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 9/131 (6%) Frame = +2 Query: 515 MGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTR-------QDTVELARRIEKCGVP 673 +G+A + P +HD ++ + K + T D V+LA++ E GV Sbjct: 104 IGTAAVKNPGFLHDACVAFPGHIIVGLDAKDGKVATDGWSKLTGHDVVDLAKKYEDYGVE 163 Query: 674 ALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRI--KDATGATSVM 847 ++ ++ +D + + AL+IPVIA+G + ++D + + + G + Sbjct: 164 SI-IYTDIGRDGMLSGLNIEATVRLAQALTIPVIASGGLTGFDDIRALCAVEGEGIVGTI 222 Query: 848 AARGALWNASI 880 A R A+++ S+ Sbjct: 223 AGR-AVYDGSL 232
>Q1GFI1:SYP_SILST Prolyl-tRNA synthetase - Silicibacter sp. (strain TM1040)| Length = 451 Score = 32.7 bits (73), Expect = 4.7 Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 11/145 (7%) Frame = +2 Query: 245 DITYGEEIIDHKFVH-CQRVTNESLGTTDFLERGTDSVVFRTCPQERDRV--------VF 397 D+T+G ID+ V CQ V E + D +F P+ER RV +F Sbjct: 229 DLTFGAREIDYDNVEQCQAVLEEFTSRYARTDETHDEALFNAVPEERRRVARGIEVGQIF 288 Query: 398 QMGT--SDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTL 571 GT S+A+ A + D ++ ++MG VS +G+ + E HD + Sbjct: 289 YFGTKYSEAL----GATVQTADGQSVPVHMG-SHGIGVSRLLGAII----EASHDDKGII 339 Query: 572 RRNLNTPVTCKIRLLNTRQDTVELA 646 TP C I L D + A Sbjct: 340 WPEGVTPFHCGIVNLKQGDDEADAA 364
>P60715:HIS6_GEOSL Imidazole glycerol phosphate synthase subunit hisF - Geobacter| sulfurreducens Length = 253 Score = 32.7 bits (73), Expect = 4.7 Identities = 25/75 (33%), Positives = 37/75 (49%) Frame = +2 Query: 629 DTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDF 808 D VE ARR+E+ G + + +D +D +V A+SIPVIA+G V E Sbjct: 154 DAVEWARRMEEYGAGEILLTSMD-RDGTKDGYDIPLTRAIVDAVSIPVIASGGVGNLEHL 212 Query: 809 KRIKDATGATSVMAA 853 GA++ +AA Sbjct: 213 YDGFVKAGASACLAA 227
>O31139:HIS6_CORGL Imidazole glycerol phosphate synthase subunit hisF -| Corynebacterium glutamicum (Brevibacterium flavum) Length = 258 Score = 32.7 bits (73), Expect = 4.7 Identities = 25/75 (33%), Positives = 41/75 (54%) Frame = +2 Query: 629 DTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDF 808 D +E A+R E+ GV + ++ D ++ + + V +A+SIPVIA+G + E F Sbjct: 160 DAIEWAKRGEELGVGEILLNSMD-GDGTKNGFDLELLEKVRAAVSIPVIASGGAGKAEHF 218 Query: 809 KRIKDATGATSVMAA 853 A GA +V+AA Sbjct: 219 PPAV-AAGANAVLAA 232
>Q0W0J3:HIS4_UNCMA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Uncultured methanogenic archaeon RC-I Length = 240 Score = 32.7 bits (73), Expect = 4.7 Identities = 16/39 (41%), Positives = 28/39 (71%) Frame = +2 Query: 731 DEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVM 847 D + +V++++IPVIA+G V + +D +IK+ TGA V+ Sbjct: 183 DPVRSLVNSVTIPVIASGGVAKIDDLVKIKN-TGAAGVV 220
>A0LHK5:HIS4_SYNFM 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) Length = 256 Score = 32.7 bits (73), Expect = 4.7 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 7/106 (6%) Frame = +2 Query: 515 MGSALLSKPELIHDILTTLRRNLNTPVTCKIRLL-------NTRQDTVELARRIEKCGVP 673 +G+A L +PE++ R + + + L+ + D V LA+R EK + Sbjct: 102 IGTAALRQPEILEQACGLYRSRIALGIDARDGLVAIEGWKETSGTDAVALAKRFEKLDLA 161 Query: 674 ALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFK 811 A+ ++ +D + + ++ + SIPVIA+G V +D + Sbjct: 162 AI-IYTDIHRDGMQSGVNIEATKRLLESCSIPVIASGGVHTLQDIE 206
>Q0BPX3:HIS4_GRABC 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Granulobacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) Length = 242 Score = 32.7 bits (73), Expect = 4.7 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 7/129 (5%) Frame = +2 Query: 515 MGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQ-------DTVELARRIEKCGVP 673 +GSA + P+L+ D + + + + T VELA R E GV Sbjct: 104 LGSAAVKTPQLVKDACRAFPGRIAVGIDARDGFVATEGWAETSSVAAVELAARFEDEGVA 163 Query: 674 ALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAA 853 A+ ++ +D ++ + A +IPVIA+G V + + DA T V+ Sbjct: 164 AI-IYTDIGRDGMLTGPNVEQTLALARATTIPVIASGGVGDLSHIVDVYDAGTITGVILG 222 Query: 854 RGALWNASI 880 R AL++ + Sbjct: 223 R-ALYDGRV 230
>P60581:HIS4_GEOSL 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Geobacter sulfurreducens Length = 244 Score = 32.7 bits (73), Expect = 4.7 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 7/131 (5%) Frame = +2 Query: 515 MGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLN-------TRQDTVELARRIEKCGVP 673 +G+A PEL+ + + + K ++ T V+LA+R E GV Sbjct: 102 LGTAAQRNPELVEEACRLFPGRIVVGIDAKNGMVAVQGWAEVTGVTAVDLAKRFEGYGVA 161 Query: 674 ALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAA 853 A+ ++ +D + + A+SIPVIA+G V +D + + A Sbjct: 162 AI-IYTDIARDGMMQGPNIEATRALAEAISIPVIASGGVSSLKDIENLM----AIETSGI 216 Query: 854 RGALWNASIFS 886 GA+ ++++ Sbjct: 217 AGAITGKAVYT 227
>Q28943:DPYD_PIG Dihydropyrimidine dehydrogenase [NADP+] precursor - Sus scrofa| (Pig) Length = 1025 Score = 32.7 bits (73), Expect = 4.7 Identities = 21/68 (30%), Positives = 33/68 (48%) Frame = +2 Query: 464 AIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVEL 643 A+++N+ CP GMG A PEL+ +I +R+ + P K L D V + Sbjct: 664 ALELNLSCPHGMG-ERGMGLACGQDPELVRNICRWVRQAVQIPFFAK--LTPNVTDIVSI 720 Query: 644 ARRIEKCG 667 AR ++ G Sbjct: 721 ARAAKEGG 728
>Q12882:DPYD_HUMAN Dihydropyrimidine dehydrogenase [NADP+] precursor - Homo sapiens| (Human) Length = 1025 Score = 32.7 bits (73), Expect = 4.7 Identities = 21/68 (30%), Positives = 33/68 (48%) Frame = +2 Query: 464 AIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVEL 643 A+++N+ CP GMG A PEL+ +I +R+ + P K L D V + Sbjct: 664 ALELNLSCPHGMG-ERGMGLACGQDPELVRNICRWVRQAVQIPFFAK--LTPNVTDIVSI 720 Query: 644 ARRIEKCG 667 AR ++ G Sbjct: 721 ARAAKEGG 728
>Q28007:DPYD_BOVIN Dihydropyrimidine dehydrogenase [NADP+] - Bos taurus (Bovine)| Length = 1025 Score = 32.7 bits (73), Expect = 4.7 Identities = 21/68 (30%), Positives = 33/68 (48%) Frame = +2 Query: 464 AIDINMGCPKAFSVSGGMGSALLSKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVEL 643 A+++N+ CP GMG A PEL+ +I +R+ + P K L D V + Sbjct: 664 ALELNLSCPHGMG-ERGMGLACGQDPELVRNICRWVRQAVRIPFFAK--LTPNVTDIVSI 720 Query: 644 ARRIEKCG 667 AR ++ G Sbjct: 721 ARAAKEGG 728
>Q0VM71:HIS4_ALCBS 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]| imidazole-4-carboxamide isomerase - Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) Length = 246 Score = 32.3 bits (72), Expect = 6.1 Identities = 19/66 (28%), Positives = 34/66 (51%) Frame = +2 Query: 620 TRQDTVELARRIEKCGVPALAVHGRKVKDRPRDPAKWDEIADVVSALSIPVIANGDVFEY 799 T D ++LA++ E GV A+ V+ +D D + ++SIPVIA+G + Sbjct: 145 TDVDVIDLAKQFENDGVSAI-VYTDISRDGMLQGVNVDATVRLAQSMSIPVIASGGITNL 203 Query: 800 EDFKRI 817 +D + + Sbjct: 204 DDVRNL 209
>Q7NTY1:GUAC_CHRVO GMP reductase - Chromobacterium violaceum| Length = 316 Score = 32.3 bits (72), Expect = 6.1 Identities = 17/38 (44%), Positives = 25/38 (65%) Frame = +2 Query: 737 IADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMA 850 + D V+A++IPVIA+G + E+ D + GAT VMA Sbjct: 191 VRDCVAAVTIPVIADGGIVEHGDIAKAL-VCGATMVMA 227
>Q8VIG2:LKAP_RAT Limkain-b1 - Rattus norvegicus (Rat)| Length = 1735 Score = 32.0 bits (71), Expect = 8.0 Identities = 23/65 (35%), Positives = 34/65 (52%) Frame = +2 Query: 1019 PEGKGVIKCGSSADVARLYGEEDYYNFVVSNRK*TKQDFANLSCDPASAWIPLLVLRMFS 1198 P G GSS + + + EE Y+ V + + +DF+ L DP S +P +VL S Sbjct: 944 PLGSSQSHDGSSTNCSPVLFEELEYHESVCKQHCSNKDFSELVFDPDSYKVPFVVL---S 1000 Query: 1199 LEVFA 1213 L+VFA Sbjct: 1001 LKVFA 1005
>O26154:IDI2_METTH Isopentenyl-diphosphate delta-isomerase - Methanobacterium| thermoautotrophicum Length = 349 Score = 32.0 bits (71), Expect = 8.0 Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 19/153 (12%) Frame = +2 Query: 389 VVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALLSKPELIHDILTT 568 ++ +G+S A +A E++ D A+ +N P S+ G E I I+ Sbjct: 119 LIGNIGSSHIEYAERAVEMIDADALAVHLN---PLQESIQPGGDVDSSGALESISAIV-- 173 Query: 569 LRRNLNTPVTCKIRLLNT-RQDTVELARRIEKCGVPALAVHGR-----------KVKDRP 712 +++ PV K +D +EL E CGV A+ V G + DR Sbjct: 174 --ESVDVPVMVKETGAGICSEDAIEL----ESCGVSAIDVAGAGGTSWAAVETYRADDRY 227 Query: 713 RDPAKWD-------EIADVVSALSIPVIANGDV 790 WD +VV ++SIPVIA+G + Sbjct: 228 LGELFWDWGIPTAASTVEVVESVSIPVIASGGI 260
>Q96EB6:SIRT1_HUMAN NAD-dependent deacetylase sirtuin-1 - Homo sapiens (Human)| Length = 747 Score = 32.0 bits (71), Expect = 8.0 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 7/46 (15%) Frame = +1 Query: 607 PSFEHTPGHCGAGTPD*EVWCSSSGCP-------WKKGQRQAKGSG 723 P E +PG G P+ EV ++ GCP W++ + +A +G Sbjct: 42 PGLERSPGEPGGAAPEREVPAAARGCPGAAAAALWREAEAEAAAAG 87 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 300,469,726 Number of extensions: 6745907 Number of successful extensions: 17781 Number of sequences better than 10.0: 180 Number of HSP's gapped: 17611 Number of HSP's successfully gapped: 181 Length of query: 559 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 441 Effective length of database: 68,319,629 Effective search space: 30128956389 Effective search space used: 30128956389 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
