| Clone Name | FLbaf34a03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT831576.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA041P09, full insert sequence Length = 1027 Score = 391 bits (197), Expect = e-105 Identities = 494/593 (83%) Strand = Plus / Plus Query: 108 gtccagatccagcgcgagaacacgaccttcgacgcctatgttgtcggcaagcagaatgcc 167 ||||||||||||||||| ||||||| || || ||||||||||| || || ||||||| Sbjct: 163 gtccagatccagcgcgacgacacgacttttgatgcctatgttgttggaaaagagaatgct 222 Query: 168 cctggagttgtagtgttgcaagagtggtggggggtcaacaatgatatcaagaatcacgcc 227 |||||| |||| || |||||||||||||||||||| || |||| ||||||||||| || Sbjct: 223 cctggaattgttgttttgcaagagtggtggggggttgactatgagatcaagaatcatgct 282 Query: 228 atccacgcctcccaaatcggcggtggatacagagcacttattccagacttgtaccgtggg 287 ||||| |||||||| || | ||||||||||| || |||||||| ||||| ||||| Sbjct: 283 gtccacatttcccaaattggtgaaggatacagagctctcattccagatttgtatcgtggt 342 Query: 288 aaggtcgctttggatgctgccgaggctcggcatctggtggaagggctagactggcagggc 347 ||||| ||| | |||| || || |||| ||||||| ||||||| |||||||||| ||| Sbjct: 343 aaggttgctcttgatgtagcggaagctcagcatctgatggaaggtctagactggccgggt 402 Query: 348 gcgatcaaggacattcaggcttcagttaaatggctcaagcaaaatggatcatctaaggtt 407 ||| ||||||| ||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct: 403 gcggtcaaggatattcaggcttcagttaaatggctcaaggcaaatggatcacccaaggtt 462 Query: 408 ggcgttactggttactgcatggggggtgctctggcaattgcgagtggagttttgattcga 467 || |||||||| || |||||||| || ||| || ||||||| |||||||||| | | | Sbjct: 463 ggtgttactggatattgcatgggaggcgctttgtcaattgcaagtggagtttcagtccca 522 Query: 468 gaggtcgattgtgttgttgctttctacgggacgccatcgtcagagcttgctgatccttcc 527 ||||| ||| |||||| |||||||| ||||| ||| | || |||||||| ||| ||||| Sbjct: 523 gaggttgatgctgttgtggctttctatgggacaccaccttctgagcttgccgatgcttcc 582 Query: 528 aaggctctcgctccaatccaggctcattttgcggagcttgacacttatgtcgggtttgct 587 ||||| | ||||| |||||||||||||||| ||||||||||| || ||| || ||||| Sbjct: 583 aaggcccaggctcccatccaggctcattttggggagcttgacagttttgttggatttgca 642 Query: 588 gatgtgaccgcggccaagtcgttggaggagaagctcaagtcttgtggggtaccacatgaa 647 ||||| || || ||||||||| ||||||||||||||||||| | ||| || ||||||||| Sbjct: 643 gatgtcacggcagccaagtcgctggaggagaagctcaagtcatctggcgtgccacatgaa 702 Query: 648 gtgcacatataccctggatgctctcatgccttcatgaacgcatcacctgaggc 700 || ||||| |||||||| ||||| ||||| || |||||| ||||||||||||| Sbjct: 703 gtccacatctaccctggctgctcgcatgcttttatgaacacatcacctgaggc 755 Score = 46.1 bits (23), Expect = 0.28 Identities = 41/47 (87%) Strand = Plus / Plus Query: 720 attgacctggcatggtcccactttgctacttggatgggtcgtttcct 766 ||||||||||| ||||| | ||| | |||||||||||||||||||| Sbjct: 805 attgacctggcctggtctcgcttctcgacttggatgggtcgtttcct 851
>ref|NM_001049779.1| Oryza sativa (japonica cultivar-group) Os01g0531500 (Os01g0531500) mRNA, complete cds Length = 1086 Score = 391 bits (197), Expect = e-105 Identities = 494/593 (83%) Strand = Plus / Plus Query: 108 gtccagatccagcgcgagaacacgaccttcgacgcctatgttgtcggcaagcagaatgcc 167 ||||||||||||||||| ||||||| || || ||||||||||| || || ||||||| Sbjct: 188 gtccagatccagcgcgacgacacgacttttgatgcctatgttgttggaaaagagaatgct 247 Query: 168 cctggagttgtagtgttgcaagagtggtggggggtcaacaatgatatcaagaatcacgcc 227 |||||| |||| || |||||||||||||||||||| || |||| ||||||||||| || Sbjct: 248 cctggaattgttgttttgcaagagtggtggggggttgactatgagatcaagaatcatgct 307 Query: 228 atccacgcctcccaaatcggcggtggatacagagcacttattccagacttgtaccgtggg 287 ||||| |||||||| || | ||||||||||| || |||||||| ||||| ||||| Sbjct: 308 gtccacatttcccaaattggtgaaggatacagagctctcattccagatttgtatcgtggt 367 Query: 288 aaggtcgctttggatgctgccgaggctcggcatctggtggaagggctagactggcagggc 347 ||||| ||| | |||| || || |||| ||||||| ||||||| |||||||||| ||| Sbjct: 368 aaggttgctcttgatgtagcggaagctcagcatctgatggaaggtctagactggccgggt 427 Query: 348 gcgatcaaggacattcaggcttcagttaaatggctcaagcaaaatggatcatctaaggtt 407 ||| ||||||| ||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct: 428 gcggtcaaggatattcaggcttcagttaaatggctcaaggcaaatggatcacccaaggtt 487 Query: 408 ggcgttactggttactgcatggggggtgctctggcaattgcgagtggagttttgattcga 467 || |||||||| || |||||||| || ||| || ||||||| |||||||||| | | | Sbjct: 488 ggtgttactggatattgcatgggaggcgctttgtcaattgcaagtggagtttcagtccca 547 Query: 468 gaggtcgattgtgttgttgctttctacgggacgccatcgtcagagcttgctgatccttcc 527 ||||| ||| |||||| |||||||| ||||| ||| | || |||||||| ||| ||||| Sbjct: 548 gaggttgatgctgttgtggctttctatgggacaccaccttctgagcttgccgatgcttcc 607 Query: 528 aaggctctcgctccaatccaggctcattttgcggagcttgacacttatgtcgggtttgct 587 ||||| | ||||| |||||||||||||||| ||||||||||| || ||| || ||||| Sbjct: 608 aaggcccaggctcccatccaggctcattttggggagcttgacagttttgttggatttgca 667 Query: 588 gatgtgaccgcggccaagtcgttggaggagaagctcaagtcttgtggggtaccacatgaa 647 ||||| || || ||||||||| ||||||||||||||||||| | ||| || ||||||||| Sbjct: 668 gatgtcacggcagccaagtcgctggaggagaagctcaagtcatctggcgtgccacatgaa 727 Query: 648 gtgcacatataccctggatgctctcatgccttcatgaacgcatcacctgaggc 700 || ||||| |||||||| ||||| ||||| || |||||| ||||||||||||| Sbjct: 728 gtccacatctaccctggctgctcgcatgcttttatgaacacatcacctgaggc 780 Score = 46.1 bits (23), Expect = 0.28 Identities = 41/47 (87%) Strand = Plus / Plus Query: 720 attgacctggcatggtcccactttgctacttggatgggtcgtttcct 766 ||||||||||| ||||| | ||| | |||||||||||||||||||| Sbjct: 830 attgacctggcctggtctcgcttctcgacttggatgggtcgtttcct 876
>dbj|AK106208.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-G04, full insert sequence Length = 1086 Score = 391 bits (197), Expect = e-105 Identities = 494/593 (83%) Strand = Plus / Plus Query: 108 gtccagatccagcgcgagaacacgaccttcgacgcctatgttgtcggcaagcagaatgcc 167 ||||||||||||||||| ||||||| || || ||||||||||| || || ||||||| Sbjct: 188 gtccagatccagcgcgacgacacgacttttgatgcctatgttgttggaaaagagaatgct 247 Query: 168 cctggagttgtagtgttgcaagagtggtggggggtcaacaatgatatcaagaatcacgcc 227 |||||| |||| || |||||||||||||||||||| || |||| ||||||||||| || Sbjct: 248 cctggaattgttgttttgcaagagtggtggggggttgactatgagatcaagaatcatgct 307 Query: 228 atccacgcctcccaaatcggcggtggatacagagcacttattccagacttgtaccgtggg 287 ||||| |||||||| || | ||||||||||| || |||||||| ||||| ||||| Sbjct: 308 gtccacatttcccaaattggtgaaggatacagagctctcattccagatttgtatcgtggt 367 Query: 288 aaggtcgctttggatgctgccgaggctcggcatctggtggaagggctagactggcagggc 347 ||||| ||| | |||| || || |||| ||||||| ||||||| |||||||||| ||| Sbjct: 368 aaggttgctcttgatgtagcggaagctcagcatctgatggaaggtctagactggccgggt 427 Query: 348 gcgatcaaggacattcaggcttcagttaaatggctcaagcaaaatggatcatctaaggtt 407 ||| ||||||| ||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct: 428 gcggtcaaggatattcaggcttcagttaaatggctcaaggcaaatggatcacccaaggtt 487 Query: 408 ggcgttactggttactgcatggggggtgctctggcaattgcgagtggagttttgattcga 467 || |||||||| || |||||||| || ||| || ||||||| |||||||||| | | | Sbjct: 488 ggtgttactggatattgcatgggaggcgctttgtcaattgcaagtggagtttcagtccca 547 Query: 468 gaggtcgattgtgttgttgctttctacgggacgccatcgtcagagcttgctgatccttcc 527 ||||| ||| |||||| |||||||| ||||| ||| | || |||||||| ||| ||||| Sbjct: 548 gaggttgatgctgttgtggctttctatgggacaccaccttctgagcttgccgatgcttcc 607 Query: 528 aaggctctcgctccaatccaggctcattttgcggagcttgacacttatgtcgggtttgct 587 ||||| | ||||| |||||||||||||||| ||||||||||| || ||| || ||||| Sbjct: 608 aaggcccaggctcccatccaggctcattttggggagcttgacagttttgttggatttgca 667 Query: 588 gatgtgaccgcggccaagtcgttggaggagaagctcaagtcttgtggggtaccacatgaa 647 ||||| || || ||||||||| ||||||||||||||||||| | ||| || ||||||||| Sbjct: 668 gatgtcacggcagccaagtcgctggaggagaagctcaagtcatctggcgtgccacatgaa 727 Query: 648 gtgcacatataccctggatgctctcatgccttcatgaacgcatcacctgaggc 700 || ||||| |||||||| ||||| ||||| || |||||| ||||||||||||| Sbjct: 728 gtccacatctaccctggctgctcgcatgcttttatgaacacatcacctgaggc 780 Score = 46.1 bits (23), Expect = 0.28 Identities = 41/47 (87%) Strand = Plus / Plus Query: 720 attgacctggcatggtcccactttgctacttggatgggtcgtttcct 766 ||||||||||| ||||| | ||| | |||||||||||||||||||| Sbjct: 830 attgacctggcctggtctcgcttctcgacttggatgggtcgtttcct 876
>dbj|AK104379.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G12, full insert sequence Length = 1010 Score = 391 bits (197), Expect = e-105 Identities = 494/593 (83%) Strand = Plus / Plus Query: 108 gtccagatccagcgcgagaacacgaccttcgacgcctatgttgtcggcaagcagaatgcc 167 ||||||||||||||||| ||||||| || || ||||||||||| || || ||||||| Sbjct: 132 gtccagatccagcgcgacgacacgacttttgatgcctatgttgttggaaaagagaatgct 191 Query: 168 cctggagttgtagtgttgcaagagtggtggggggtcaacaatgatatcaagaatcacgcc 227 |||||| |||| || |||||||||||||||||||| || |||| ||||||||||| || Sbjct: 192 cctggaattgttgttttgcaagagtggtggggggttgactatgagatcaagaatcatgct 251 Query: 228 atccacgcctcccaaatcggcggtggatacagagcacttattccagacttgtaccgtggg 287 ||||| |||||||| || | ||||||||||| || |||||||| ||||| ||||| Sbjct: 252 gtccacatttcccaaattggtgaaggatacagagctctcattccagatttgtatcgtggt 311 Query: 288 aaggtcgctttggatgctgccgaggctcggcatctggtggaagggctagactggcagggc 347 ||||| ||| | |||| || || |||| ||||||| ||||||| |||||||||| ||| Sbjct: 312 aaggttgctcttgatgtagcggaagctcagcatctgatggaaggtctagactggccgggt 371 Query: 348 gcgatcaaggacattcaggcttcagttaaatggctcaagcaaaatggatcatctaaggtt 407 ||| ||||||| ||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct: 372 gcggtcaaggatattcaggcttcagttaaatggctcaaggcaaatggatcacccaaggtt 431 Query: 408 ggcgttactggttactgcatggggggtgctctggcaattgcgagtggagttttgattcga 467 || |||||||| || |||||||| || ||| || ||||||| |||||||||| | | | Sbjct: 432 ggtgttactggatattgcatgggaggcgctttgtcaattgcaagtggagtttcagtccca 491 Query: 468 gaggtcgattgtgttgttgctttctacgggacgccatcgtcagagcttgctgatccttcc 527 ||||| ||| |||||| |||||||| ||||| ||| | || |||||||| ||| ||||| Sbjct: 492 gaggttgatgctgttgtggctttctatgggacaccaccttctgagcttgccgatgcttcc 551 Query: 528 aaggctctcgctccaatccaggctcattttgcggagcttgacacttatgtcgggtttgct 587 ||||| | ||||| |||||||||||||||| ||||||||||| || ||| || ||||| Sbjct: 552 aaggcccaggctcccatccaggctcattttggggagcttgacagttttgttggatttgca 611 Query: 588 gatgtgaccgcggccaagtcgttggaggagaagctcaagtcttgtggggtaccacatgaa 647 ||||| || || ||||||||| ||||||||||||||||||| | ||| || ||||||||| Sbjct: 612 gatgtcacggcagccaagtcgctggaggagaagctcaagtcatctggcgtgccacatgaa 671 Query: 648 gtgcacatataccctggatgctctcatgccttcatgaacgcatcacctgaggc 700 || ||||| |||||||| ||||| ||||| || |||||| ||||||||||||| Sbjct: 672 gtccacatctaccctggctgctcgcatgcttttatgaacacatcacctgaggc 724 Score = 46.1 bits (23), Expect = 0.28 Identities = 41/47 (87%) Strand = Plus / Plus Query: 720 attgacctggcatggtcccactttgctacttggatgggtcgtttcct 766 ||||||||||| ||||| | ||| | |||||||||||||||||||| Sbjct: 774 attgacctggcctggtctcgcttctcgacttggatgggtcgtttcct 820
>dbj|AK059992.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C04, full insert sequence Length = 1014 Score = 391 bits (197), Expect = e-105 Identities = 494/593 (83%) Strand = Plus / Plus Query: 108 gtccagatccagcgcgagaacacgaccttcgacgcctatgttgtcggcaagcagaatgcc 167 ||||||||||||||||| ||||||| || || ||||||||||| || || ||||||| Sbjct: 134 gtccagatccagcgcgacgacacgacttttgatgcctatgttgttggaaaagagaatgct 193 Query: 168 cctggagttgtagtgttgcaagagtggtggggggtcaacaatgatatcaagaatcacgcc 227 |||||| |||| || |||||||||||||||||||| || |||| ||||||||||| || Sbjct: 194 cctggaattgttgttttgcaagagtggtggggggttgactatgagatcaagaatcatgct 253 Query: 228 atccacgcctcccaaatcggcggtggatacagagcacttattccagacttgtaccgtggg 287 ||||| |||||||| || | ||||||||||| || |||||||| ||||| ||||| Sbjct: 254 gtccacatttcccaaattggtgaaggatacagagctctcattccagatttgtatcgtggt 313 Query: 288 aaggtcgctttggatgctgccgaggctcggcatctggtggaagggctagactggcagggc 347 ||||| ||| | |||| || || |||| ||||||| ||||||| |||||||||| ||| Sbjct: 314 aaggttgctcttgatgtagcggaagctcagcatctgatggaaggtctagactggccgggt 373 Query: 348 gcgatcaaggacattcaggcttcagttaaatggctcaagcaaaatggatcatctaaggtt 407 ||| ||||||| ||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct: 374 gcggtcaaggatattcaggcttcagttaaatggctcaaggcaaatggatcacccaaggtt 433 Query: 408 ggcgttactggttactgcatggggggtgctctggcaattgcgagtggagttttgattcga 467 || |||||||| || |||||||| || ||| || ||||||| |||||||||| | | | Sbjct: 434 ggtgttactggatattgcatgggaggcgctttgtcaattgcaagtggagtttcagtccca 493 Query: 468 gaggtcgattgtgttgttgctttctacgggacgccatcgtcagagcttgctgatccttcc 527 ||||| ||| |||||| |||||||| ||||| ||| | || |||||||| ||| ||||| Sbjct: 494 gaggttgatgctgttgtggctttctatgggacaccaccttctgagcttgccgatgcttcc 553 Query: 528 aaggctctcgctccaatccaggctcattttgcggagcttgacacttatgtcgggtttgct 587 ||||| | ||||| |||||||||||||||| ||||||||||| || ||| || ||||| Sbjct: 554 aaggcccaggctcccatccaggctcattttggggagcttgacagttttgttggatttgca 613 Query: 588 gatgtgaccgcggccaagtcgttggaggagaagctcaagtcttgtggggtaccacatgaa 647 ||||| || || ||||||||| ||||||||||||||||||| | ||| || ||||||||| Sbjct: 614 gatgtcacggcagccaagtcgctggaggagaagctcaagtcatctggcgtgccacatgaa 673 Query: 648 gtgcacatataccctggatgctctcatgccttcatgaacgcatcacctgaggc 700 || ||||| |||||||| ||||| ||||| || |||||| ||||||||||||| Sbjct: 674 gtccacatctaccctggctgctcgcatgcttttatgaacacatcacctgaggc 726 Score = 46.1 bits (23), Expect = 0.28 Identities = 41/47 (87%) Strand = Plus / Plus Query: 720 attgacctggcatggtcccactttgctacttggatgggtcgtttcct 766 ||||||||||| ||||| | ||| | |||||||||||||||||||| Sbjct: 776 attgacctggcctggtctcgcttctcgacttggatgggtcgtttcct 822
>gb|BT016534.1| Zea mays clone Contig367 mRNA sequence Length = 1037 Score = 331 bits (167), Expect = 3e-87 Identities = 494/603 (81%) Strand = Plus / Plus Query: 98 gttccagaaagtccagatccagcgcgagaacacgaccttcgacgcctatgttgtcggcaa 157 ||||||||| ||||||||||||||||| |||| || || || || |||||||| ||||| Sbjct: 160 gttccagaagatccagatccagcgcgaggacaccacttttgatgcttatgttgttggcaa 219 Query: 158 gcagaatgcccctggagttgtagtgttgcaagagtggtggggggtcaacaatgatatcaa 217 | ||||| |||||| |||| || ||||||||||||||||| || || |||| || || Sbjct: 220 agaaaatgctcctggaattgtggttttgcaagagtggtggggagttgactatgagataaa 279 Query: 218 gaatcacgccatccacgcctcccaaatcggcggtggatacagagcacttattccagactt 277 ||| || || |||||| |||||| | || || |||||||||||||| |||||||| || Sbjct: 280 gaaccatgcgatccacatttcccaacttggtggaggatacagagcactcattccagattt 339 Query: 278 gtaccgtgggaaggtcgctttggatgctgccgaggctcggcatctggtggaagggctaga 337 |||||||| || || ||| | |||| ||| ||||| | |||||| |||| || || || Sbjct: 340 ataccgtggaaaagttgctctcgatgttgctgaggcacaacatctgatggagggtctcga 399 Query: 338 ctggcagggcgcgatcaaggacattcaggcttcagttaaatggctcaagcaaaatggatc 397 ||||||||| || ||||||| || |||||||||||||||||||| ||| ||||||||| Sbjct: 400 ctggcagggtgcagtcaaggatatccaggcttcagttaaatggctgaagtcaaatggatc 459 Query: 398 atctaaggttggcgttactggttactgcatggggggtgctctggcaattgcgagtggagt 457 | | |||||||| |||||||| || |||||||| |||||| | ||||||| |||||||| Sbjct: 460 acccaaggttggtgttactggctattgcatgggaggtgctttatcaattgcaagtggagt 519 Query: 458 tttgattcgagaggtcgattgtgttgttgctttctacgggacgccatcgtcagagcttgc 517 ||| | | |||||| ||| ||||||||||||||| ||||| ||||| || |||||||| Sbjct: 520 tttagtcccagaggttgatgctgttgttgctttctatgggacaccatcttctgagcttgc 579 Query: 518 tgatccttccaaggctctcgctccaatccaggctcattttgcggagcttgacacttatgt 577 ||||||||| |||||| ||||| || ||||||||||| | ||||| ||||| || ||| Sbjct: 580 tgatccttctaaggctaaggctcctatacaggctcatttcggggagcatgacagttttgt 639 Query: 578 cgggtttgctgatgtgaccgcggccaagtcgttggaggagaagctcaagtcttgtggggt 637 || ||| | ||||| || || |||||||| |||||||||||||||| |||| ||| | Sbjct: 640 tggtttttcagatgtcactgcagccaagtccctggaggagaagctcaaatcttccgggat 699 Query: 638 accacatgaagtgcacatataccctggatgctctcatgccttcatgaacgcatcacctga 697 |||| ||||||| ||||||||||||||||| || ||||||||||||||| | || ||||| Sbjct: 700 accatatgaagttcacatataccctggatgttcgcatgccttcatgaacacttcgcctga 759 Query: 698 ggc 700 ||| Sbjct: 760 ggc 762
>gb|AY104907.1| Zea mays PCO117250 mRNA sequence Length = 1130 Score = 331 bits (167), Expect = 3e-87 Identities = 494/603 (81%) Strand = Plus / Plus Query: 98 gttccagaaagtccagatccagcgcgagaacacgaccttcgacgcctatgttgtcggcaa 157 ||||||||| ||||||||||||||||| |||| || || || || |||||||| ||||| Sbjct: 173 gttccagaagatccagatccagcgcgaggacaccacttttgatgcttatgttgttggcaa 232 Query: 158 gcagaatgcccctggagttgtagtgttgcaagagtggtggggggtcaacaatgatatcaa 217 | ||||| |||||| |||| || ||||||||||||||||| || || |||| || || Sbjct: 233 agaaaatgctcctggaattgtggttttgcaagagtggtggggagttgactatgagataaa 292 Query: 218 gaatcacgccatccacgcctcccaaatcggcggtggatacagagcacttattccagactt 277 ||| || || |||||| |||||| | || || |||||||||||||| |||||||| || Sbjct: 293 gaaccatgcgatccacatttcccaacttggtggaggatacagagcactcattccagattt 352 Query: 278 gtaccgtgggaaggtcgctttggatgctgccgaggctcggcatctggtggaagggctaga 337 |||||||| || || ||| | |||| ||| ||||| | |||||| |||| || || || Sbjct: 353 ataccgtggaaaagttgctctcgatgttgctgaggcacaacatctgatggagggtctcga 412 Query: 338 ctggcagggcgcgatcaaggacattcaggcttcagttaaatggctcaagcaaaatggatc 397 ||||||||| || ||||||| || |||||||||||||||||||| ||| ||||||||| Sbjct: 413 ctggcagggtgcagtcaaggatatccaggcttcagttaaatggctgaagtcaaatggatc 472 Query: 398 atctaaggttggcgttactggttactgcatggggggtgctctggcaattgcgagtggagt 457 | | |||||||| |||||||| || |||||||| |||||| | ||||||| |||||||| Sbjct: 473 acccaaggttggtgttactggctattgcatgggaggtgctttatcaattgcaagtggagt 532 Query: 458 tttgattcgagaggtcgattgtgttgttgctttctacgggacgccatcgtcagagcttgc 517 ||| | | |||||| ||| ||||||||||||||| ||||| ||||| || |||||||| Sbjct: 533 tttagtcccagaggttgatgctgttgttgctttctatgggacaccatcttctgagcttgc 592 Query: 518 tgatccttccaaggctctcgctccaatccaggctcattttgcggagcttgacacttatgt 577 ||||||||| |||||| ||||| || ||||||||||| | ||||| ||||| || ||| Sbjct: 593 tgatccttctaaggctaaggctcctatacaggctcatttcggggagcatgacagttttgt 652 Query: 578 cgggtttgctgatgtgaccgcggccaagtcgttggaggagaagctcaagtcttgtggggt 637 || ||| | ||||| || || |||||||| |||||||||||||||| |||| ||| | Sbjct: 653 tggtttttcagatgtcactgcagccaagtccctggaggagaagctcaaatcttccgggat 712 Query: 638 accacatgaagtgcacatataccctggatgctctcatgccttcatgaacgcatcacctga 697 |||| ||||||| ||||||||||||||||| || ||||||||||||||| | || ||||| Sbjct: 713 accatatgaagttcacatataccctggatgttcgcatgccttcatgaacacttcgcctga 772 Query: 698 ggc 700 ||| Sbjct: 773 ggc 775
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 107 bits (54), Expect = 9e-20 Identities = 156/190 (82%) Strand = Plus / Plus Query: 403 aggttggcgttactggttactgcatggggggtgctctggcaattgcgagtggagttttga 462 ||||||| |||||||| || |||||||| || ||| || ||||||| |||||||||| Sbjct: 19135121 aggttggtgttactggatattgcatgggaggcgctttgtcaattgcaagtggagtttcag 19135180 Query: 463 ttcgagaggtcgattgtgttgttgctttctacgggacgccatcgtcagagcttgctgatc 522 | | |||||| ||| |||||| |||||||| ||||| ||| | || |||||||| ||| Sbjct: 19135181 tcccagaggttgatgctgttgtggctttctatgggacaccaccttctgagcttgccgatg 19135240 Query: 523 cttccaaggctctcgctccaatccaggctcattttgcggagcttgacacttatgtcgggt 582 |||||||||| | ||||| |||||||||||||||| ||||||||||| || ||| || | Sbjct: 19135241 cttccaaggcccaggctcccatccaggctcattttggggagcttgacagttttgttggat 19135300 Query: 583 ttgctgatgt 592 |||| ||||| Sbjct: 19135301 ttgcagatgt 19135310 Score = 105 bits (53), Expect = 4e-19 Identities = 89/101 (88%) Strand = Plus / Plus Query: 600 gccaagtcgttggaggagaagctcaagtcttgtggggtaccacatgaagtgcacatatac 659 ||||||||| ||||||||||||||||||| | ||| || ||||||||||| ||||| ||| Sbjct: 19135597 gccaagtcgctggaggagaagctcaagtcatctggcgtgccacatgaagtccacatctac 19135656 Query: 660 cctggatgctctcatgccttcatgaacgcatcacctgaggc 700 ||||| ||||| ||||| || |||||| ||||||||||||| Sbjct: 19135657 cctggctgctcgcatgcttttatgaacacatcacctgaggc 19135697 Score = 101 bits (51), Expect = 6e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 312 gctcggcatctggtggaagggctagactggcagggcgcgatcaaggacattcaggcttca 371 |||| ||||||| ||||||| |||||||||| ||| ||| ||||||| |||||||||||| Sbjct: 19134293 gctcagcatctgatggaaggtctagactggccgggtgcggtcaaggatattcaggcttca 19134352 Query: 372 gttaaatggctcaagcaaaatggatca 398 ||||||||||||||| |||||||||| Sbjct: 19134353 gttaaatggctcaaggcaaatggatca 19134379 Score = 75.8 bits (38), Expect = 3e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 141 gcctatgttgtcggcaagcagaatgcccctggagttgtagtgttgcaagagtggtggggg 200 ||||||||||| || || ||||||| |||||| |||| || |||||||||||||||||| Sbjct: 19133492 gcctatgttgttggaaaagagaatgctcctggaattgttgttttgcaagagtggtggggg 19133551 Query: 201 gtcaacaatgatatcaagaatcacgccatccacgcctcccaaatcggcggtggatacaga 260 || || |||| ||||||||||| || ||||| |||||||| || | ||||||||| Sbjct: 19133552 gttgactatgagatcaagaatcatgctgtccacatttcccaaattggtgaaggatacaga 19133611 Query: 261 gcacttattccaga 274 || || |||||||| Sbjct: 19133612 gctctcattccaga 19133625 Score = 46.1 bits (23), Expect = 0.28 Identities = 41/47 (87%) Strand = Plus / Plus Query: 720 attgacctggcatggtcccactttgctacttggatgggtcgtttcct 766 ||||||||||| ||||| | ||| | |||||||||||||||||||| Sbjct: 19135747 attgacctggcctggtctcgcttctcgacttggatgggtcgtttcct 19135793
>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702H08 Length = 166899 Score = 107 bits (54), Expect = 9e-20 Identities = 156/190 (82%) Strand = Plus / Plus Query: 403 aggttggcgttactggttactgcatggggggtgctctggcaattgcgagtggagttttga 462 ||||||| |||||||| || |||||||| || ||| || ||||||| |||||||||| Sbjct: 100538 aggttggtgttactggatattgcatgggaggcgctttgtcaattgcaagtggagtttcag 100597 Query: 463 ttcgagaggtcgattgtgttgttgctttctacgggacgccatcgtcagagcttgctgatc 522 | | |||||| ||| |||||| |||||||| ||||| ||| | || |||||||| ||| Sbjct: 100598 tcccagaggttgatgctgttgtggctttctatgggacaccaccttctgagcttgccgatg 100657 Query: 523 cttccaaggctctcgctccaatccaggctcattttgcggagcttgacacttatgtcgggt 582 |||||||||| | ||||| |||||||||||||||| ||||||||||| || ||| || | Sbjct: 100658 cttccaaggcccaggctcccatccaggctcattttggggagcttgacagttttgttggat 100717 Query: 583 ttgctgatgt 592 |||| ||||| Sbjct: 100718 ttgcagatgt 100727 Score = 105 bits (53), Expect = 4e-19 Identities = 89/101 (88%) Strand = Plus / Plus Query: 600 gccaagtcgttggaggagaagctcaagtcttgtggggtaccacatgaagtgcacatatac 659 ||||||||| ||||||||||||||||||| | ||| || ||||||||||| ||||| ||| Sbjct: 101014 gccaagtcgctggaggagaagctcaagtcatctggcgtgccacatgaagtccacatctac 101073 Query: 660 cctggatgctctcatgccttcatgaacgcatcacctgaggc 700 ||||| ||||| ||||| || |||||| ||||||||||||| Sbjct: 101074 cctggctgctcgcatgcttttatgaacacatcacctgaggc 101114 Score = 101 bits (51), Expect = 6e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 312 gctcggcatctggtggaagggctagactggcagggcgcgatcaaggacattcaggcttca 371 |||| ||||||| ||||||| |||||||||| ||| ||| ||||||| |||||||||||| Sbjct: 99710 gctcagcatctgatggaaggtctagactggccgggtgcggtcaaggatattcaggcttca 99769 Query: 372 gttaaatggctcaagcaaaatggatca 398 ||||||||||||||| |||||||||| Sbjct: 99770 gttaaatggctcaaggcaaatggatca 99796 Score = 75.8 bits (38), Expect = 3e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 141 gcctatgttgtcggcaagcagaatgcccctggagttgtagtgttgcaagagtggtggggg 200 ||||||||||| || || ||||||| |||||| |||| || |||||||||||||||||| Sbjct: 98909 gcctatgttgttggaaaagagaatgctcctggaattgttgttttgcaagagtggtggggg 98968 Query: 201 gtcaacaatgatatcaagaatcacgccatccacgcctcccaaatcggcggtggatacaga 260 || || |||| ||||||||||| || ||||| |||||||| || | ||||||||| Sbjct: 98969 gttgactatgagatcaagaatcatgctgtccacatttcccaaattggtgaaggatacaga 99028 Query: 261 gcacttattccaga 274 || || |||||||| Sbjct: 99029 gctctcattccaga 99042 Score = 46.1 bits (23), Expect = 0.28 Identities = 41/47 (87%) Strand = Plus / Plus Query: 720 attgacctggcatggtcccactttgctacttggatgggtcgtttcct 766 ||||||||||| ||||| | ||| | |||||||||||||||||||| Sbjct: 101164 attgacctggcctggtctcgcttctcgacttggatgggtcgtttcct 101210
>gb|BT014493.1| Lycopersicon esculentum clone 133862R, mRNA sequence Length = 1164 Score = 77.8 bits (39), Expect = 8e-11 Identities = 108/131 (82%) Strand = Plus / Plus Query: 318 catctggtggaagggctagactggcagggcgcgatcaaggacattcaggcttcagttaaa 377 |||||| |||| || || |||||||| || || |||| || ||||||||||||||||| Sbjct: 365 catctgatggatggtcttgactggcaaggggctgtcaaagatattcaggcttcagttaat 424 Query: 378 tggctcaagcaaaatggatcatctaaggttggcgttactggttactgcatggggggtgct 437 ||||| ||| ||||||||| |||||||| |||||||| ||||||||||| |||||| Sbjct: 425 tggctaaagtcaaatggatccaaaaaggttggagttactggatactgcatgggtggtgct 484 Query: 438 ctggcaattgc 448 || || ||||| Sbjct: 485 cttgcgattgc 495
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome Length = 6537648 Score = 42.1 bits (21), Expect = 4.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 73 tggccgccgccaacgacgccggccagttc 101 |||||| |||||||||||||| ||||||| Sbjct: 5853864 tggccgacgccaacgacgccgcccagttc 5853836
>gb|AC183837.3| Pan troglodytes BAC clone CH251-60C22 from chromosome 17, complete sequence Length = 239719 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 70441 gggtcaacaatgatatcaaga 70461 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 112377 gggtcaacaatgatatcaaga 112357
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome Length = 6264404 Score = 42.1 bits (21), Expect = 4.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 73 tggccgccgccaacgacgccggccagttc 101 |||||| |||||||||||||| ||||||| Sbjct: 5582468 tggccgacgccaacgacgccgcccagttc 5582440
>gb|AC183625.3| Pan troglodytes BAC clone CH251-12B21 from chromosome 17, complete sequence Length = 134326 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 7816 gggtcaacaatgatatcaaga 7796
>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster, complete sequence Length = 135638 Score = 42.1 bits (21), Expect = 4.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 67 ccgccatggccgccgccaacgacgccggc 95 |||||||||||| ||||| |||||||||| Sbjct: 29077 ccgccatggccgacgccatcgacgccggc 29105
>gb|AC125225.4| Mus musculus BAC clone RP23-36I17 from 6, complete sequence Length = 215406 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1038 tctcggccttcagttttcttt 1058 ||||||||||||||||||||| Sbjct: 37566 tctcggccttcagttttcttt 37586
>tpg|BK001591.1| TPA_exp: Homo sapiens chromosome 17 proximal SMS-REP low-copy repeat, genomic sequence Length = 255901 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 87337 gggtcaacaatgatatcaaga 87357
>tpg|BK001590.1| TPA_exp: Homo sapiens chromosome 17 middle SMS-REP low-copy repeat, genomic sequence Length = 240806 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 152982 gggtcaacaatgatatcaaga 152962
>tpg|BK001589.1| TPA_exp: Homo sapiens chromosome 17 distal SMS-REP low-copy repeat, genomic sequence Length = 176482 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 89918 gggtcaacaatgatatcaaga 89938
>gb|AC105243.5| Homo sapiens chromosome 18, clone CTD-2354A18, complete sequence Length = 128935 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 47045 gggtcaacaatgatatcaaga 47025
>gb|AC105100.5| Homo sapiens, clone RP11-448D22, complete sequence Length = 167889 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 130356 gggtcaacaatgatatcaaga 130376
>gb|AC105216.3| Homo sapiens chromosome 18, clone RP11-382C11, complete sequence Length = 154590 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 18499 gggtcaacaatgatatcaaga 18519
>gb|AC107983.3| Homo sapiens chromosome 17, clone CTD-2303H24, complete sequence Length = 130561 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 75587 gggtcaacaatgatatcaaga 75567
>gb|AE010263.1| Pyrococcus furiosus DSM 3638, section 138 of 173 of the complete genome Length = 11081 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 949 ttttgtggatgctgagctaattcgg 973 ||||||||| ||||||||||||||| Sbjct: 5498 ttttgtggaggctgagctaattcgg 5474
>gb|AC098850.2| Homo sapiens chromosome 17, clone RP11-92B11, complete sequence Length = 178965 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 153875 gggtcaacaatgatatcaaga 153895
>emb|AL159972.8| Human DNA sequence from clone RP11-157H4 on chromosome 13 Contains part of the KLF12 gene for Kruppel-like factor 12, complete sequence Length = 149512 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1050 gttttctttggaaagcatttt 1070 ||||||||||||||||||||| Sbjct: 136440 gttttctttggaaagcatttt 136460
>gb|AC093214.2| Homo sapiens chromosome 5 clone CTD-2060C23, complete sequence Length = 148327 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 70817 gggtcaacaatgatatcaaga 70837
>gb|AC016594.7| Homo sapiens chromosome 5 clone CTD-2010O3, complete sequence Length = 146235 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 39195 gggtcaacaatgatatcaaga 39215
>gb|AC097531.2| Homo sapiens BAC clone RP11-720L11 from 2, complete sequence Length = 103844 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1046 ttcagttttctttggaaagcatttt 1070 ||||||||| ||||||||||||||| Sbjct: 38729 ttcagttttgtttggaaagcatttt 38705
>gb|AC147328.4| Pan troglodytes BAC clone RP43-30N11 from chromosome 7, complete sequence Length = 207176 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 16411 gggtcaacaatgatatcaaga 16391
>gb|AC126352.6| Homo sapiens chromosome 17, clone CTD-2509K7, complete sequence Length = 211403 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 89155 gggtcaacaatgatatcaaga 89135
>gb|AC015818.32| Homo sapiens chromosome 17, clone RP11-434D2, complete sequence Length = 194767 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 22193 gggtcaacaatgatatcaaga 22213
>gb|AC090164.22| Homo sapiens chromosome 15, clone RP11-14C10, complete sequence Length = 204674 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 122025 gggtcaacaatgatatcaaga 122005
>gb|AC022596.9|AC022596 Homo sapiens chromosome 17, clone RP11-219A15, complete sequence Length = 192337 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 97176 gggtcaacaatgatatcaaga 97156
>emb|BX647826.1|HSM807972 Homo sapiens mRNA; cDNA DKFZp686G1086 (from clone DKFZp686G1086) Length = 8704 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 gggtcaacaatgatatcaaga 219 ||||||||||||||||||||| Sbjct: 8423 gggtcaacaatgatatcaaga 8443 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 195,814,227 Number of extensions: 9544465 Number of successful extensions: 190818 Number of sequences better than 10.0: 35 Number of HSP's gapped: 190803 Number of HSP's successfully gapped: 49 Length of query: 1172 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1149 Effective length of database: 18,503,978,556 Effective search space: 21261071360844 Effective search space used: 21261071360844 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)