ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf33p14 |
|---|---|
| Clone Library Name | barley_pub |
>Q8VD57:SFT2B_MOUSE Vesicle transport protein SFT2B - Mus musculus (Mouse)| Length = 159 Score = 94.7 bits (234), Expect = 5e-19 Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 4/143 (2%) Frame = +3 Query: 294 QSFFDDINRHCALNTTQRLYGFAICLAAGLTCTFLSMLVFFNPVK----FGVTFTLGNAM 461 +S ++ +L+ R+ GF C A G+ C+ L L+ + P K F V +TLGN M Sbjct: 16 RSGLSEVVEASSLSWGTRIKGFIACFALGILCSVLGTLLLWVPRKGLGLFAVFYTLGNIM 75 Query: 462 ALGSTAFLIGPKRQFDMMLDPVRXXXXXXXXXXXXVSLFCALLVHSKLLTLLAIILEFGA 641 ++GST FL+GP +Q M +P R ++L C+ + +K L L+ IL+ A Sbjct: 76 SIGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALTL-CSAFLWNKGLALIFCILQSLA 134 Query: 642 LIWYSLSYIPFARSVVSKVMASC 710 L WYSLSYIP+AR V K A C Sbjct: 135 LTWYSLSYIPYARDAVKKCFAVC 157
>O95562:SFT2B_HUMAN Vesicle transport protein SFT2B - Homo sapiens (Human)| Length = 160 Score = 93.6 bits (231), Expect = 1e-18 Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 4/143 (2%) Frame = +3 Query: 294 QSFFDDINRHCALNTTQRLYGFAICLAAGLTCTFLSMLVFFNPVK----FGVTFTLGNAM 461 +S ++ +L+ + R+ GF C A G+ C+ L ++ + P K F V +T GN Sbjct: 16 RSGLSEVVEASSLSWSTRIKGFIACFAIGILCSLLGTVLLWVPRKGLHLFAVFYTFGNIA 75 Query: 462 ALGSTAFLIGPKRQFDMMLDPVRXXXXXXXXXXXXVSLFCALLVHSKLLTLLAIILEFGA 641 ++GST FL+GP +Q M +P R ++L A H+K L L+ IL+ A Sbjct: 76 SIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLCSAFWWHNKGLALIFCILQSLA 135 Query: 642 LIWYSLSYIPFARSVVSKVMASC 710 L WYSLS+IPFAR V K A C Sbjct: 136 LTWYSLSFIPFARDAVKKCFAVC 158
>Q4FZV2:SFT2B_RAT Vesicle transport protein SFT2B - Rattus norvegicus (Rat)| Length = 157 Score = 93.2 bits (230), Expect = 1e-18 Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 2/141 (1%) Frame = +3 Query: 294 QSFFDDINRHCALNTTQRLYGFAICLAAGLTCTFLSMLVFFNPVK--FGVTFTLGNAMAL 467 +S ++ +L+ + R+ GF +C A G+ C+ L L+ + K F V +TLGN ++ Sbjct: 16 RSGLSEVVESSSLSWSTRIKGFIVCFALGILCSLLGTLLLWVSRKGLFAVFYTLGNITSI 75 Query: 468 GSTAFLIGPKRQFDMMLDPVRXXXXXXXXXXXXVSLFCALLVHSKLLTLLAIILEFGALI 647 GST FL+GP +Q M +P R ++L C+ + +K L L+ IL+ AL Sbjct: 76 GSTMFLMGPLKQLKRMFEPTRLIATILVLLFFVLTL-CSAFLWNKGLALIFCILQSLALT 134 Query: 648 WYSLSYIPFARSVVSKVMASC 710 WYSLSYIP+AR V K A C Sbjct: 135 WYSLSYIPYARDAVKKCFAVC 155
>Q5SSN7:SFT2A_MOUSE Vesicle transport protein SFT2A - Mus musculus (Mouse)| Length = 159 Score = 82.4 bits (202), Expect = 3e-15 Identities = 53/130 (40%), Positives = 69/130 (53%), Gaps = 3/130 (2%) Frame = +3 Query: 327 ALNTTQRLYGFAICLAAGLTCTFLS--MLVFFNPVK-FGVTFTLGNAMALGSTAFLIGPK 497 +L+ RL F IC AG+ +FL +L N +K F V +TLGN AL ST FL+GP Sbjct: 27 SLSFNTRLKWFVICFVAGIFFSFLGTGLLWLPNGMKLFAVFYTLGNLAALASTCFLMGPV 86 Query: 498 RQFDMMLDPVRXXXXXXXXXXXXVSLFCALLVHSKLLTLLAIILEFGALIWYSLSYIPFA 677 +Q M + R +L AL K L LL IL+F ++ WYSLSYIP+A Sbjct: 87 KQLKKMFETTRLLATIIMLLCLVFTLCAALWWRKKGLALLFCILQFLSMTWYSLSYIPYA 146 Query: 678 RSVVSKVMAS 707 R V K +S Sbjct: 147 RDAVLKCCSS 156
>Q8WV19:SFT2A_HUMAN Vesicle transport protein SFT2A - Homo sapiens (Human)| Length = 159 Score = 81.6 bits (200), Expect = 4e-15 Identities = 51/130 (39%), Positives = 69/130 (53%), Gaps = 3/130 (2%) Frame = +3 Query: 327 ALNTTQRLYGFAICLAAGLTCTFLSMLVFFNP--VK-FGVTFTLGNAMALGSTAFLIGPK 497 +L+ RL FAIC G+ + L + + P +K F V +TLGN AL ST FL+GP Sbjct: 27 SLSFNTRLKWFAICFVCGVFFSILGTGLLWLPGGIKLFAVFYTLGNLAALASTCFLMGPV 86 Query: 498 RQFDMMLDPVRXXXXXXXXXXXXVSLFCALLVHSKLLTLLAIILEFGALIWYSLSYIPFA 677 +Q M + R +L AL H K L +L IL+F ++ WYSLSYIP+A Sbjct: 87 KQLKKMFEATRLLATIVMLLCFIFTLCAALWWHKKGLAVLFCILQFLSMTWYSLSYIPYA 146 Query: 678 RSVVSKVMAS 707 R V K +S Sbjct: 147 RDAVIKCCSS 156
>Q5U3Y5:SFT2A_RAT Vesicle transport protein SFT2A - Rattus norvegicus (Rat)| Length = 159 Score = 81.3 bits (199), Expect = 6e-15 Identities = 53/130 (40%), Positives = 68/130 (52%), Gaps = 3/130 (2%) Frame = +3 Query: 327 ALNTTQRLYGFAICLAAGLTCTFLS--MLVFFNPVK-FGVTFTLGNAMALGSTAFLIGPK 497 +L+ RL F IC AG+ + L +L N VK F V +TLGN AL ST FL+GP Sbjct: 27 SLSFNTRLKWFVICFVAGIFFSILGTGLLWLPNGVKLFAVFYTLGNLAALASTCFLMGPV 86 Query: 498 RQFDMMLDPVRXXXXXXXXXXXXVSLFCALLVHSKLLTLLAIILEFGALIWYSLSYIPFA 677 +Q M + R +L AL K L LL IL+F ++ WYSLSYIP+A Sbjct: 87 KQLKKMFETTRLLATIIMLLCLVFTLCAALWWRKKGLALLFCILQFLSMTWYSLSYIPYA 146 Query: 678 RSVVSKVMAS 707 R V K +S Sbjct: 147 RDAVLKCCSS 156
>P38166:SFT2_YEAST Protein transport protein SFT2 - Saccharomyces cerevisiae (Baker's| yeast) Length = 215 Score = 53.1 bits (126), Expect = 2e-06 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 5/120 (4%) Frame = +3 Query: 330 LNTTQRLYGFAICLAAGLT-----CTFLSMLVFFNPVKFGVTFTLGNAMALGSTAFLIGP 494 L+ T+R+ F +C G T CTFL ++ P KFG+ +T+G+ + + + L+GP Sbjct: 75 LSRTERMVLF-VCFLLGATACFTLCTFLFPVLAAKPRKFGLLWTMGSLLFVLAFGVLMGP 133 Query: 495 KRQFDMMLDPVRXXXXXXXXXXXXVSLFCALLVHSKLLTLLAIILEFGALIWYSLSYIPF 674 + R ++++ A + +LT+ +LE A+I+Y++SY PF Sbjct: 134 LAYLKHLTARERLPFSMFFFATCFMTIYFAAFSKNTVLTITCALLELVAVIYYAISYFPF 193
>Q9P6K1:SFT2_SCHPO Protein transport protein sft2 - Schizosaccharomyces pombe (Fission| yeast) Length = 201 Score = 41.6 bits (96), Expect = 0.005 Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 4/126 (3%) Frame = +3 Query: 327 ALNTTQRLYGFAICLAAGLTCTFLSMLVF----FNPVKFGVTFTLGNAMALGSTAFLIGP 494 +L+ +R F ICL L C ++ +F P KF + +T+G+ +A+ A + G Sbjct: 61 SLSRWERYMLFGICLLGSLACYAIACFMFPVLVLKPRKFVLLWTMGSLLAVLGFAIVQGF 120 Query: 495 KRQFDMMLDPVRXXXXXXXXXXXXVSLFCALLVHSKLLTLLAIILEFGALIWYSLSYIPF 674 F + R ++ + + S +L+++ +L + + Y +++ PF Sbjct: 121 VAHFRQLTTMERLPITLSYFVTLLATIIATIKIKSTILSIVFGVLHILSFVAYLIAFFPF 180 Query: 675 ARSVVS 692 VS Sbjct: 181 GTRTVS 186
>P62592:INT2_SALTI Integrase/recombinase - Salmonella typhi| Length = 337 Score = 31.6 bits (70), Expect = 5.2 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 9/57 (15%) Frame = -1 Query: 926 PSQREQ---RRAIYISAQEGGNSGEKVNMISNRR------SWPWLKVYSRSAATTDP 783 PS REQ RA ++ Q G SG + R+ SWPW V+++ +TDP Sbjct: 186 PSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDP 242
>P62591:INT2_PSEAE Integrase/recombinase - Pseudomonas aeruginosa| Length = 337 Score = 31.6 bits (70), Expect = 5.2 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 9/57 (15%) Frame = -1 Query: 926 PSQREQ---RRAIYISAQEGGNSGEKVNMISNRR------SWPWLKVYSRSAATTDP 783 PS REQ RA ++ Q G SG + R+ SWPW V+++ +TDP Sbjct: 186 PSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDP 242
>P62590:INT2_ECOLI Integrase/recombinase - Escherichia coli| Length = 337 Score = 31.6 bits (70), Expect = 5.2 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 9/57 (15%) Frame = -1 Query: 926 PSQREQ---RRAIYISAQEGGNSGEKVNMISNRR------SWPWLKVYSRSAATTDP 783 PS REQ RA ++ Q G SG + R+ SWPW V+++ +TDP Sbjct: 186 PSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDP 242 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 172,101,772 Number of extensions: 3757077 Number of successful extensions: 9366 Number of sequences better than 10.0: 11 Number of HSP's gapped: 9361 Number of HSP's successfully gapped: 11 Length of query: 327 Length of database: 100,686,439 Length adjustment: 113 Effective length of query: 214 Effective length of database: 69,691,104 Effective search space: 14913896256 Effective search space used: 14913896256 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
