ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf33p14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001053696.1| Oryza sativa (japonica cultivar-group) Os02g0564500 (Os02g0564500) mRNA, complete cds Length = 982 Score = 505 bits (255), Expect = e-140 Identities = 399/447 (89%) Strand = Plus / Plus Query: 283 cgcccgaggagcagtccttcttcgacgacatcaaccggcactgcgccctcaacaccaccc 342 |||| |||||||||||||||||||||||| ||| ||| |||||||||||| |||||||| Sbjct: 262 cgccggaggagcagtccttcttcgacgacgtcacccgcaactgcgccctcaccaccaccc 321 Query: 343 agaggttgtatggttttgcgatatgcttggctgccggtttgacttgcactttcttgtcaa 402 ||||| |||| || || |||||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 322 agaggctgtacggcttcgcgatatgcttggctgccggattgacgtgcaccttcttgtcaa 381 Query: 403 tgcttgttttcttcaatcctgtgaagtttggagttacattcacgcttggcaatgcgatgg 462 ||||||||||||||||||||||||| || || || |||||||| ||||||||| ||||| Sbjct: 382 tgcttgttttcttcaatcctgtgaaattcggggtaacattcacccttggcaatttgatgg 441 Query: 463 cactcggaagtacagcgtttcttataggtcccaagagacagtttgatatgatgcttgatc 522 |||| ||||||||||||||||||||||||||||| || || ||||| |||||||||||| Sbjct: 442 cacttggaagtacagcgtttcttataggtcccaaaaggcaatttgacatgatgcttgatt 501 Query: 523 ctgtccgtatatatgccactgctatatacattgcaagcatcatagtttctctattctgcg 582 |||| || |||||||| |||||| |||||||||||||||||||| || |||| ||||| | Sbjct: 502 ctgtgcggatatatgcaactgctgtatacattgcaagcatcataattgctctgttctgtg 561 Query: 583 ctctcttagttcacagtaagctgttgactctacttgccatcatcttggaatttggtgccc 642 ||||||| || ||||| |||||| |||||||||||||||| ||||||||||||||||| | Sbjct: 562 ctctctttgtgcacagcaagctgctgactctacttgccattatcttggaatttggtgctc 621 Query: 643 ttatctggtacagtctaagctatataccctttgcacgatcagttgtttcgaaagtgatgg 702 || | |||||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 622 ttgtttggtacagtctaagctatataccctttgcacgctcggttgtttcgaaggtgatga 681 Query: 703 catcttgcttcgaaactgaattctaga 729 | ||||||||||| ||||||||||||| Sbjct: 682 cgtcttgcttcgacactgaattctaga 708
>dbj|AK103450.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129I06, full insert sequence Length = 985 Score = 505 bits (255), Expect = e-140 Identities = 399/447 (89%) Strand = Plus / Plus Query: 283 cgcccgaggagcagtccttcttcgacgacatcaaccggcactgcgccctcaacaccaccc 342 |||| |||||||||||||||||||||||| ||| ||| |||||||||||| |||||||| Sbjct: 265 cgccggaggagcagtccttcttcgacgacgtcacccgcaactgcgccctcaccaccaccc 324 Query: 343 agaggttgtatggttttgcgatatgcttggctgccggtttgacttgcactttcttgtcaa 402 ||||| |||| || || |||||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 325 agaggctgtacggcttcgcgatatgcttggctgccggattgacgtgcaccttcttgtcaa 384 Query: 403 tgcttgttttcttcaatcctgtgaagtttggagttacattcacgcttggcaatgcgatgg 462 ||||||||||||||||||||||||| || || || |||||||| ||||||||| ||||| Sbjct: 385 tgcttgttttcttcaatcctgtgaaattcggggtaacattcacccttggcaatttgatgg 444 Query: 463 cactcggaagtacagcgtttcttataggtcccaagagacagtttgatatgatgcttgatc 522 |||| ||||||||||||||||||||||||||||| || || ||||| |||||||||||| Sbjct: 445 cacttggaagtacagcgtttcttataggtcccaaaaggcaatttgacatgatgcttgatt 504 Query: 523 ctgtccgtatatatgccactgctatatacattgcaagcatcatagtttctctattctgcg 582 |||| || |||||||| |||||| |||||||||||||||||||| || |||| ||||| | Sbjct: 505 ctgtgcggatatatgcaactgctgtatacattgcaagcatcataattgctctgttctgtg 564 Query: 583 ctctcttagttcacagtaagctgttgactctacttgccatcatcttggaatttggtgccc 642 ||||||| || ||||| |||||| |||||||||||||||| ||||||||||||||||| | Sbjct: 565 ctctctttgtgcacagcaagctgctgactctacttgccattatcttggaatttggtgctc 624 Query: 643 ttatctggtacagtctaagctatataccctttgcacgatcagttgtttcgaaagtgatgg 702 || | |||||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 625 ttgtttggtacagtctaagctatataccctttgcacgctcggttgtttcgaaggtgatga 684 Query: 703 catcttgcttcgaaactgaattctaga 729 | ||||||||||| ||||||||||||| Sbjct: 685 cgtcttgcttcgacactgaattctaga 711
>gb|DQ246061.1| Zea mays clone 13260 mRNA sequence Length = 984 Score = 492 bits (248), Expect = e-135 Identities = 440/504 (87%) Strand = Plus / Plus Query: 226 tggagcgggccaagatgctggtcggcatggagttcgacgaggaatccgcgccgccgccgc 285 |||||||||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| Sbjct: 117 tggagcgggccaagatgctggtgggcatggaggtcgacgaggagtccgcgttgccaccgc 176 Query: 286 ccgaggagcagtccttcttcgacgacatcaaccggcactgcgccctcaacaccacccaga 345 ||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||| Sbjct: 177 ccgaggagcagtccttcttcgacgacatcaatcggcattgcaccctcaacaccactcaga 236 Query: 346 ggttgtatggttttgcgatatgcttggctgccggtttgacttgcactttcttgtcaatgc 405 || | |||||||| |||||||||||||||||||| |||| ||||| ||||||||||||| Sbjct: 237 ggctctatggtttcgcgatatgcttggctgccggactgacgtgcacattcttgtcaatgc 296 Query: 406 ttgttttcttcaatcctgtgaagtttggagttacattcacgcttggcaatgcgatggcac 465 |||| ||||||||||| ||||| ||||| || ||||||| ||||||||| |||||| | Sbjct: 297 ttgtcttcttcaatccagtgaaatttggggtagcattcacccttggcaatttgatggccc 356 Query: 466 tcggaagtacagcgtttcttataggtcccaagagacagtttgatatgatgcttgatcctg 525 | ||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||| ||| Sbjct: 357 ttggaagtacagcatttctcataggccccaaaagacagtttgatatgatgcttgattctg 416 Query: 526 tccgtatatatgccactgctatatacattgcaagcatcatagtttctctattctgcgctc 585 | || |||||||||||||||||||| ||||||||||||||| || |||||||||| ||| Sbjct: 417 tgcgaatatatgccactgctatatatattgcaagcatcataattgctctattctgtgcta 476 Query: 586 tcttagttcacagtaagctgttgactctacttgccatcatcttggaatttggtgccctta 645 ||| |||| ||| |||||| |||||||| | |||||||| ||||||||||||||||||| Sbjct: 477 tctacgttcgcagcaagctgctgactctagtggccatcattttggaatttggtgccctta 536 Query: 646 tctggtacagtctaagctatataccctttgcacgatcagttgtttcgaaagtgatggcat 705 | |||||||| || ||||| ||||| || ||| | || |||| ||||| |||||| ||| Sbjct: 537 tttggtacagccttagctacatacctttcgcaaggtcgattgtgtcgaaggtgatgacat 596 Query: 706 cttgcttcgaaactgaattctaga 729 | |||||||| ||||| ||||||| Sbjct: 597 cgtgcttcgacactgatttctaga 620
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 133 bits (67), Expect = 1e-27 Identities = 106/119 (89%) Strand = Plus / Minus Query: 471 agtacagcgtttcttataggtcccaagagacagtttgatatgatgcttgatcctgtccgt 530 |||||||||||||||||||||||||| || || ||||| |||||||||||| |||| || Sbjct: 21452583 agtacagcgtttcttataggtcccaaaaggcaatttgacatgatgcttgattctgtgcgg 21452524 Query: 531 atatatgccactgctatatacattgcaagcatcatagtttctctattctgcgctctctt 589 |||||||| |||||| |||||||||||||||||||| || |||| ||||| |||||||| Sbjct: 21452523 atatatgcaactgctgtatacattgcaagcatcataattgctctgttctgtgctctctt 21452465 Score = 113 bits (57), Expect = 1e-21 Identities = 75/81 (92%) Strand = Plus / Minus Query: 649 ggtacagtctaagctatataccctttgcacgatcagttgtttcgaaagtgatggcatctt 708 ||||||||||||||||||||||||||||||| || ||||||||||| |||||| | |||| Sbjct: 21452002 ggtacagtctaagctatataccctttgcacgctcggttgtttcgaaggtgatgacgtctt 21451943 Query: 709 gcttcgaaactgaattctaga 729 ||||||| ||||||||||||| Sbjct: 21451942 gcttcgacactgaattctaga 21451922 Score = 85.7 bits (43), Expect = 3e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 398 gtcaatgcttgttttcttcaatcctgtgaagtttggagttacattcacgcttggcaatgc 457 |||||||||||||||||||||||||||||| || || || |||||||| ||||||||| Sbjct: 21453080 gtcaatgcttgttttcttcaatcctgtgaaattcggggtaacattcacccttggcaattt 21453021 Query: 458 gatggcactcggaag 472 ||||||||| ||||| Sbjct: 21453020 gatggcacttggaag 21453006 Score = 75.8 bits (38), Expect = 3e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 283 cgcccgaggagcagtccttcttcgacgacatcaaccggcactgcgccctcaacaccaccc 342 |||| |||||||||||||||||||||||| ||| ||| |||||||||||| |||||||| Sbjct: 21454115 cgccggaggagcagtccttcttcgacgacgtcacccgcaactgcgccctcaccaccaccc 21454056 Query: 343 ag 344 || Sbjct: 21454055 ag 21454054 Score = 69.9 bits (35), Expect = 2e-08 Identities = 44/47 (93%) Strand = Plus / Minus Query: 594 cacagtaagctgttgactctacttgccatcatcttggaatttggtgc 640 ||||| |||||| |||||||||||||||| ||||||||||||||||| Sbjct: 21452363 cacagcaagctgctgactctacttgccattatcttggaatttggtgc 21452317 Score = 58.0 bits (29), Expect = 6e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 342 cagaggttgtatggttttgcgatatgcttggctgccggtttgacttgcactttcttg 398 |||||| |||| || || |||||||||||||||||||| ||||| ||||| |||||| Sbjct: 21453906 cagaggctgtacggcttcgcgatatgcttggctgccggattgacgtgcaccttcttg 21453850
>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020C11 Length = 163328 Score = 133 bits (67), Expect = 1e-27 Identities = 106/119 (89%) Strand = Plus / Minus Query: 471 agtacagcgtttcttataggtcccaagagacagtttgatatgatgcttgatcctgtccgt 530 |||||||||||||||||||||||||| || || ||||| |||||||||||| |||| || Sbjct: 47510 agtacagcgtttcttataggtcccaaaaggcaatttgacatgatgcttgattctgtgcgg 47451 Query: 531 atatatgccactgctatatacattgcaagcatcatagtttctctattctgcgctctctt 589 |||||||| |||||| |||||||||||||||||||| || |||| ||||| |||||||| Sbjct: 47450 atatatgcaactgctgtatacattgcaagcatcataattgctctgttctgtgctctctt 47392 Score = 113 bits (57), Expect = 1e-21 Identities = 75/81 (92%) Strand = Plus / Minus Query: 649 ggtacagtctaagctatataccctttgcacgatcagttgtttcgaaagtgatggcatctt 708 ||||||||||||||||||||||||||||||| || ||||||||||| |||||| | |||| Sbjct: 46929 ggtacagtctaagctatataccctttgcacgctcggttgtttcgaaggtgatgacgtctt 46870 Query: 709 gcttcgaaactgaattctaga 729 ||||||| ||||||||||||| Sbjct: 46869 gcttcgacactgaattctaga 46849 Score = 85.7 bits (43), Expect = 3e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 398 gtcaatgcttgttttcttcaatcctgtgaagtttggagttacattcacgcttggcaatgc 457 |||||||||||||||||||||||||||||| || || || |||||||| ||||||||| Sbjct: 48007 gtcaatgcttgttttcttcaatcctgtgaaattcggggtaacattcacccttggcaattt 47948 Query: 458 gatggcactcggaag 472 ||||||||| ||||| Sbjct: 47947 gatggcacttggaag 47933 Score = 75.8 bits (38), Expect = 3e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 283 cgcccgaggagcagtccttcttcgacgacatcaaccggcactgcgccctcaacaccaccc 342 |||| |||||||||||||||||||||||| ||| ||| |||||||||||| |||||||| Sbjct: 49042 cgccggaggagcagtccttcttcgacgacgtcacccgcaactgcgccctcaccaccaccc 48983 Query: 343 ag 344 || Sbjct: 48982 ag 48981 Score = 69.9 bits (35), Expect = 2e-08 Identities = 44/47 (93%) Strand = Plus / Minus Query: 594 cacagtaagctgttgactctacttgccatcatcttggaatttggtgc 640 ||||| |||||| |||||||||||||||| ||||||||||||||||| Sbjct: 47290 cacagcaagctgctgactctacttgccattatcttggaatttggtgc 47244 Score = 58.0 bits (29), Expect = 6e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 342 cagaggttgtatggttttgcgatatgcttggctgccggtttgacttgcactttcttg 398 |||||| |||| || || |||||||||||||||||||| ||||| ||||| |||||| Sbjct: 48833 cagaggctgtacggcttcgcgatatgcttggctgccggattgacgtgcaccttcttg 48777
>ref|NM_122262.2| Arabidopsis thaliana unknown protein (AT5G23550) mRNA, complete cds Length = 980 Score = 65.9 bits (33), Expect = 3e-07 Identities = 120/149 (80%) Strand = Plus / Plus Query: 342 cagaggttgtatggttttgcgatatgcttggctgccggtttgacttgcactttcttgtca 401 ||||| || ||||| ||||| || |||||| | || |||||||| || || | ||||| Sbjct: 291 cagagattttatggctttgcaatttgcttgtcagcaggtttgacctgtacacttttgtcg 350 Query: 402 atgcttgttttcttcaatcctgtgaagtttggagttacattcacgcttggcaatgcgatg 461 |||||||||||||| ||||| || |||||||| | |||||||| || || ||| |||| Sbjct: 351 atgcttgttttctttaatccggtcaagtttggcatcacattcactctgggaaatttgatg 410 Query: 462 gcactcggaagtacagcgtttcttatagg 490 |||||||| || ||||| || |||||||| Sbjct: 411 gcactcgggagcacagcattccttatagg 439
>gb|BT005168.1| Arabidopsis thaliana clone U50489 unknown protein (At5g23550) mRNA, complete cds Length = 559 Score = 65.9 bits (33), Expect = 3e-07 Identities = 120/149 (80%) Strand = Plus / Plus Query: 342 cagaggttgtatggttttgcgatatgcttggctgccggtttgacttgcactttcttgtca 401 ||||| || ||||| ||||| || |||||| | || |||||||| || || | ||||| Sbjct: 142 cagagattttatggctttgcaatttgcttgtcagcaggtttgacctgtacacttttgtcg 201 Query: 402 atgcttgttttcttcaatcctgtgaagtttggagttacattcacgcttggcaatgcgatg 461 |||||||||||||| ||||| || |||||||| | |||||||| || || ||| |||| Sbjct: 202 atgcttgttttctttaatccggtcaagtttggcatcacattcactctgggaaatttgatg 261 Query: 462 gcactcggaagtacagcgtttcttatagg 490 |||||||| || ||||| || |||||||| Sbjct: 262 gcactcgggagcacagcattccttatagg 290
>dbj|AK117540.1| Arabidopsis thaliana At5g23550 mRNA for unknown protein, complete cds, clone: RAFL17-19-H10 Length = 980 Score = 65.9 bits (33), Expect = 3e-07 Identities = 120/149 (80%) Strand = Plus / Plus Query: 342 cagaggttgtatggttttgcgatatgcttggctgccggtttgacttgcactttcttgtca 401 ||||| || ||||| ||||| || |||||| | || |||||||| || || | ||||| Sbjct: 291 cagagattttatggctttgcaatttgcttgtcagcaggtttgacctgtacacttttgtcg 350 Query: 402 atgcttgttttcttcaatcctgtgaagtttggagttacattcacgcttggcaatgcgatg 461 |||||||||||||| ||||| || |||||||| | |||||||| || || ||| |||| Sbjct: 351 atgcttgttttctttaatccggtcaagtttggcatcacattcactctgggaaatttgatg 410 Query: 462 gcactcggaagtacagcgtttcttatagg 490 |||||||| || ||||| || |||||||| Sbjct: 411 gcactcgggagcacagcattccttatagg 439
>emb|CT984518.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 662 Score = 61.9 bits (31), Expect = 4e-06 Identities = 88/107 (82%) Strand = Plus / Plus Query: 315 aaccggcactgcgccctcaacaccacccagaggttgtatggttttgcgatatgcttggct 374 ||||| || ||| |||||| ||||| |||||||| || || ||||| ||||| |||||| Sbjct: 1 aaccgccagtgcaccctcaccaccaagcagaggttctacggctttgccatatgtttggct 60 Query: 375 gccggtttgacttgcactttcttgtcaatgcttgttttcttcaatcc 421 || || || |||||||| | ||||| ||||||||||||||| |||| Sbjct: 61 gctgggttaacttgcacgcttttgtctatgcttgttttcttccatcc 107 Score = 48.1 bits (24), Expect = 0.060 Identities = 51/60 (85%) Strand = Plus / Plus Query: 509 tatgatgcttgatcctgtccgtatatatgccactgctatatacattgcaagcatcatagt 568 ||||||||||||||| || ||||| ||||| ||||| ||||||| ||||| || ||||| Sbjct: 195 tatgatgcttgatccggttcgtatctatgcaactgccttatacatagcaagtatgatagt 254 Score = 48.1 bits (24), Expect = 0.060 Identities = 30/32 (93%) Strand = Plus / Plus Query: 621 atcatcttggaatttggtgcccttatctggta 652 ||||| ||||||||||| |||||||||||||| Sbjct: 307 atcattttggaatttggcgcccttatctggta 338
>emb|CT981643.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 772 Score = 61.9 bits (31), Expect = 4e-06 Identities = 88/107 (82%) Strand = Plus / Plus Query: 315 aaccggcactgcgccctcaacaccacccagaggttgtatggttttgcgatatgcttggct 374 ||||| || ||| |||||| ||||| |||||||| || || ||||| ||||| |||||| Sbjct: 1 aaccgccagtgcaccctcaccaccaagcagaggttctacggctttgccatatgtttggct 60 Query: 375 gccggtttgacttgcactttcttgtcaatgcttgttttcttcaatcc 421 || || || |||||||| | ||||| ||||||||||||||| |||| Sbjct: 61 gctgggttaacttgcacgcttttgtctatgcttgttttcttccatcc 107 Score = 48.1 bits (24), Expect = 0.060 Identities = 51/60 (85%) Strand = Plus / Plus Query: 509 tatgatgcttgatcctgtccgtatatatgccactgctatatacattgcaagcatcatagt 568 ||||||||||||||| || ||||| ||||| ||||| ||||||| ||||| || ||||| Sbjct: 195 tatgatgcttgatccggttcgtatctatgcaactgccttatacatagcaagtatgatagt 254 Score = 48.1 bits (24), Expect = 0.060 Identities = 30/32 (93%) Strand = Plus / Plus Query: 621 atcatcttggaatttggtgcccttatctggta 652 ||||| ||||||||||| |||||||||||||| Sbjct: 307 atcattttggaatttggcgcccttatctggta 338
>emb|CT980195.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 708 Score = 61.9 bits (31), Expect = 4e-06 Identities = 88/107 (82%) Strand = Plus / Plus Query: 315 aaccggcactgcgccctcaacaccacccagaggttgtatggttttgcgatatgcttggct 374 ||||| || ||| |||||| ||||| |||||||| || || ||||| ||||| |||||| Sbjct: 1 aaccgccagtgcaccctcaccaccaagcagaggttctacggctttgccatatgtttggct 60 Query: 375 gccggtttgacttgcactttcttgtcaatgcttgttttcttcaatcc 421 || || || |||||||| | ||||| ||||||||||||||| |||| Sbjct: 61 gctgggttaacttgcacgcttttgtctatgcttgttttcttccatcc 107 Score = 48.1 bits (24), Expect = 0.060 Identities = 51/60 (85%) Strand = Plus / Plus Query: 509 tatgatgcttgatcctgtccgtatatatgccactgctatatacattgcaagcatcatagt 568 ||||||||||||||| || ||||| ||||| ||||| ||||||| ||||| || ||||| Sbjct: 195 tatgatgcttgatccggttcgtatctatgcaactgccttatacatagcaagtatgatagt 254 Score = 48.1 bits (24), Expect = 0.060 Identities = 30/32 (93%) Strand = Plus / Plus Query: 621 atcatcttggaatttggtgcccttatctggta 652 ||||| ||||||||||| |||||||||||||| Sbjct: 307 atcattttggaatttggcgcccttatctggta 338
>gb|AC139853.17| Medicago truncatula clone mth2-13d20, complete sequence Length = 93375 Score = 52.0 bits (26), Expect = 0.004 Identities = 44/50 (88%) Strand = Plus / Plus Query: 510 atgatgcttgatcctgtccgtatatatgccactgctatatacattgcaag 559 ||||||||||||||||| ||||| ||||| || || |||||||| ||||| Sbjct: 1572 atgatgcttgatcctgttcgtatttatgcaacagccatatacatcgcaag 1621
>dbj|AP004916.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT18E24, TM0074, complete sequence Length = 131741 Score = 52.0 bits (26), Expect = 0.004 Identities = 44/50 (88%) Strand = Plus / Minus Query: 510 atgatgcttgatcctgtccgtatatatgccactgctatatacattgcaag 559 ||||||||||||||||| || || ||||| || || |||||||||||||| Sbjct: 79699 atgatgcttgatcctgttcggatctatgcaacagccatatacattgcaag 79650
>gb|AC161613.4| Pan troglodytes BAC clone CH251-574N10 from chromosome 13, complete sequence Length = 218563 Score = 48.1 bits (24), Expect = 0.060 Identities = 24/24 (100%) Strand = Plus / Plus Query: 389 cactttcttgtcaatgcttgtttt 412 |||||||||||||||||||||||| Sbjct: 62775 cactttcttgtcaatgcttgtttt 62798
>gb|AC163765.3| Pan troglodytes BAC clone CH251-175G24 from chromosome unknown, complete sequence Length = 196942 Score = 48.1 bits (24), Expect = 0.060 Identities = 24/24 (100%) Strand = Plus / Plus Query: 389 cactttcttgtcaatgcttgtttt 412 |||||||||||||||||||||||| Sbjct: 116740 cactttcttgtcaatgcttgtttt 116763
>emb|AL137002.19| Human DNA sequence from clone RP11-98F14 on chromosome 13q22.1-31.1 Contains the 3' end of the MCF2L gene for MCF.2 cell line derived transforming sequence-like, the F7 gene for coagulation factor VII (serum prothrombin conversion accelerator), the F10 gene for coagulation factor X, a lysyl-tRNA synthetase (KARS) pseudogene, the PROZ gene for protein Z, vitamin K-dependent plasma glycoprotein (PZ), the 3' end of a novel gene (FLJ11305) and six CpG islands, complete sequence Length = 132933 Score = 48.1 bits (24), Expect = 0.060 Identities = 24/24 (100%) Strand = Plus / Minus Query: 389 cactttcttgtcaatgcttgtttt 412 |||||||||||||||||||||||| Sbjct: 130034 cactttcttgtcaatgcttgtttt 130011
>dbj|AB025633.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQM1 Length = 81365 Score = 48.1 bits (24), Expect = 0.060 Identities = 57/68 (83%) Strand = Plus / Minus Query: 402 atgcttgttttcttcaatcctgtgaagtttggagttacattcacgcttggcaatgcgatg 461 |||||||||||||| ||||| || |||||||| | |||||||| || || ||| |||| Sbjct: 19736 atgcttgttttctttaatccggtcaagtttggcatcacattcactctgggaaatttgatg 19677 Query: 462 gcactcgg 469 |||||||| Sbjct: 19676 gcactcgg 19669
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 44.1 bits (22), Expect = 0.94 Identities = 22/22 (100%) Strand = Plus / Minus Query: 245 ggtcggcatggagttcgacgag 266 |||||||||||||||||||||| Sbjct: 398735 ggtcggcatggagttcgacgag 398714
>gb|CP000384.1| Mycobacterium sp. MCS, complete genome Length = 5705448 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 ccgcgccgccgccgcccgagg 291 ||||||||||||||||||||| Sbjct: 4102188 ccgcgccgccgccgcccgagg 4102168
>gb|DQ438920.1| Drosophila simulans strain 197 ballchen gene, complete cds Length = 1961 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 910 tgttccctttggcttgggact 930 ||||||||||||||||||||| Sbjct: 1443 tgttccctttggcttgggact 1423
>gb|DQ438914.1| Drosophila sechellia strain Coyne Hun pseudogene, partial sequence Length = 1292 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 910 tgttccctttggcttgggact 930 ||||||||||||||||||||| Sbjct: 1030 tgttccctttggcttgggact 1010
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 cgcgccgccgccgcccgagga 292 ||||||||||||||||||||| Sbjct: 4572983 cgcgccgccgccgcccgagga 4572963
>gb|AC114321.2| Homo sapiens chromosome 5 clone RP11-710L15, complete sequence Length = 158109 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 agatgctggtcggcatggagt 258 ||||||||||||||||||||| Sbjct: 28678 agatgctggtcggcatggagt 28698
>gb|AC122720.2| Homo sapiens chromosome 5 clone RP11-67M9, complete sequence Length = 160505 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 agatgctggtcggcatggagt 258 ||||||||||||||||||||| Sbjct: 133957 agatgctggtcggcatggagt 133977
>emb|AL139295.6|CNS01DXE Human chromosome 14 DNA sequence BAC R-61A17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 152553 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 aaagtggtagtaccaatttgt 53 ||||||||||||||||||||| Sbjct: 39951 aaagtggtagtaccaatttgt 39971 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 154,530,630 Number of extensions: 8157635 Number of successful extensions: 201061 Number of sequences better than 10.0: 25 Number of HSP's gapped: 201061 Number of HSP's successfully gapped: 41 Length of query: 983 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 960 Effective length of database: 18,503,978,556 Effective search space: 17763819413760 Effective search space used: 17763819413760 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
