ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf31a07 |
|---|---|
| Clone Library Name | barley_pub |
>P0C042:Y4597_ARATH Uncharacterized protein At4g15970 - Arabidopsis thaliana (Mouse-ear| cress) Length = 367 Score = 230 bits (586), Expect = 1e-59 Identities = 112/279 (40%), Positives = 165/279 (59%), Gaps = 3/279 (1%) Frame = +3 Query: 312 LAELLPRVATDDGTVIITSVNEAWSRPGSLLDLFREGFKNGEGIAHLLNHTLIVAVDAGA 491 L ++L AT+D TVIIT++N+AWS P S DLF F G+G LL H ++ +D A Sbjct: 42 LGKILTEAATEDKTVIITTLNKAWSEPNSTFDLFLHSFHVGKGTKPLLRHLVVACLDEEA 101 Query: 492 LAHCEAVHPH-CYLLEVTAADVSSANRFMTKSYLELVWAKLELQQRVLQLGYSYLFTDVD 668 + C VHPH CY ++ D + FMT YL+++W ++E +L+L Y+++FT Sbjct: 102 YSRCSEVHPHRCYFMKTPGIDFAGDKMFMTPDYLKMMWRRIEFLGTLLKLRYNFIFTI-- 159 Query: 669 IMWLRNPFRHISLYADMAVSTDRFNGDAEALTNAPNTGFYYVRSTNRTVEMLRRWRAARS 848 PF +S D ++ DR++GD + + NA N GF +V++ RT++ W +R Sbjct: 160 ------PFPRLSKEVDFQIACDRYSGDDKDIHNAVNGGFAFVKANQRTIDFYNYWYMSRL 213 Query: 849 RFPPTHDQAVFDEIKGELAAGELRIRFVFLETALFDGFCQLHGEMDRVCTMHANCCIGLE 1028 R+P HDQ V D+IKG ++ ++ FL+T F GFC+ ++D+VCTMHANCC+GLE Sbjct: 214 RYPDRHDQDVLDQIKGGGYPAKIGLKMRFLDTKYFGGFCEPSRDLDKVCTMHANCCVGLE 273 Query: 1029 NKVHDLRNVAADWKNYTSMAPPERTGGGR--RWTAPAQC 1139 NK+ DLR V DW+NY S A +T G+ W P C Sbjct: 274 NKIKDLRQVIVDWENYVSAA---KTTDGQIMTWRDPENC 309
>Q61371:IFT88_MOUSE Intraflagellar transport 88 homolog - Mus musculus (Mouse)| Length = 824 Score = 36.6 bits (83), Expect = 0.23 Identities = 19/39 (48%), Positives = 25/39 (64%) Frame = +3 Query: 669 IMWLRNPFRHISLYADMAVSTDRFNGDAEALTNAPNTGF 785 + +L N F S YAD+AV++DR+N ALTN NT F Sbjct: 459 LYYLENEFAQASSYADLAVNSDRYN--PSALTNKGNTVF 495
>Q29414:ASIP_BOVIN Agouti-signaling protein precursor - Bos taurus (Bovine)| Length = 133 Score = 33.5 bits (75), Expect = 2.0 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -3 Query: 208 SRSPTRSEARKKSRIVGRRAPRRNEAEWLPPTPPCC 101 S+ +R+EA KK R R+AP +N A PP P C Sbjct: 59 SKKISRNEAEKKKRPSKRKAPMKNVARTRPPPPTPC 94
>P21561:YGY3_HALSQ Hypothetical 50.6 kDa protein in the 5'region of gyrA and gyrB -| Haloferax sp. (strain Aa 2.2) Length = 437 Score = 32.7 bits (73), Expect = 3.3 Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 9/94 (9%) Frame = +2 Query: 686 PVPAHQPLRG---HGRLHRPVQRRRRGPDQRAQHGLLLRQVHQPHGGDAAQVAGGEVAVP 856 P A LRG HG H RR R Q + G R H P +A GE Sbjct: 218 PPTARDVLRGEPGHGDGHHLEGRRGRPRPQGREAG---RGAHPPQVRARIYLAAGEARGL 274 Query: 857 ADPRPGGVR------RDQGRAGCRRATDQVRVPG 940 +PRP GVR R +GR G +A + +VPG Sbjct: 275 PEPRPLGVRTVHRGGRLRGRVG--QAGPRPQVPG 306
>P22105:TENX_HUMAN Tenascin-X precursor - Homo sapiens (Human)| Length = 4289 Score = 32.7 bits (73), Expect = 3.3 Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 1/116 (0%) Frame = +3 Query: 96 RKQHGGVGGSHSASFLLGALLPTILLFFLASDRVGERLASISSLGNNDGSSAAHQQTTHA 275 R Q VGG S + G L G RL +S++G + + +TT A Sbjct: 2622 RPQAVRVGGQESKVTVRGLEPGRKYKMHLYGLHEGRRLGPVSAVGVTEDEA----ETTQA 2677 Query: 276 NHTGTEER-LFPGLAELLPRVATDDGTVIITSVNEAWSRPGSLLDLFREGFKNGEG 440 T T E + P L EL AT D S++ +W+ P D F ++NG+G Sbjct: 2678 VPTMTPEPPIKPRLGELTMTDATPD------SLSLSWTVPEGQFDHFLVQYRNGDG 2727
>Q7TNK8:ADM2_MOUSE ADM2 precursor - Mus musculus (Mouse)| Length = 150 Score = 32.3 bits (72), Expect = 4.4 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 4/85 (4%) Frame = +2 Query: 689 VPAHQPLRGHGRLHRPVQR-RRRGPDQRAQHGLLLRQVHQPHGGDAAQVAGGEVAVPADP 865 +P+ GH L V + RR P + + L VH P GG + P Sbjct: 44 IPSSNLQPGHPSLQPVVWKSRRHAPQPQGRGNRALAMVHLPQGGGSRH--------PGPQ 95 Query: 866 RPGGVRRDQG---RAGCRRATDQVR 931 RP G RR R GC T QV+ Sbjct: 96 RPTGSRRPHAQLLRVGCVLGTCQVQ 120
>A0JMF6:MTMRA_DANRE Myotubularin-related protein 10 - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 752 Score = 32.0 bits (71), Expect = 5.7 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = -3 Query: 1051 FLRSCTLFSSPMQQLACMVHTRSISPWSWQKPSKSAVSRNTN 926 F+ +L ++Q AC +++ I W W PS SA+ R +N Sbjct: 243 FVVPVSLADQDLKQYACCFYSQRIPLWCWNHPSGSALVRMSN 284
>Q13099:IFT88_HUMAN Intraflagellar transport 88 homolog - Homo sapiens (Human)| Length = 824 Score = 32.0 bits (71), Expect = 5.7 Identities = 17/39 (43%), Positives = 24/39 (61%) Frame = +3 Query: 669 IMWLRNPFRHISLYADMAVSTDRFNGDAEALTNAPNTGF 785 + ++ F S YAD+AV++DR+N ALTN NT F Sbjct: 459 LYYMGKDFAQASSYADIAVNSDRYN--PAALTNKGNTVF 495
>Q7RX84:CWC22_NEUCR Pre-mRNA-splicing factor cwc-22 - Neurospora crassa| Length = 1010 Score = 32.0 bits (71), Expect = 5.7 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = -3 Query: 208 SRSPTRSEARKKSRIVGRRAPRRNEAEWLPPTPP 107 SRS +RS +R S+ V R PRR E P+PP Sbjct: 769 SRSRSRSYSRSVSKSVSRSPPRRRAVESRSPSPP 802
>P51848:PDC2_ORYSA Pyruvate decarboxylase isozyme 2 - Oryza sativa (Rice)| Length = 605 Score = 31.6 bits (70), Expect = 7.5 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +3 Query: 1023 LENKVHD-LRNVAADWKNYTSMAPPERTGGGRRWTAPAQCEASMRQ 1157 +E ++HD NV +W NYT + G G+ WT+ +CE + + Sbjct: 515 IEVEIHDGPYNVIKNW-NYTGLVDAIHNGEGKCWTSKVKCEEELTE 559 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 164,095,779 Number of extensions: 3587969 Number of successful extensions: 12696 Number of sequences better than 10.0: 10 Number of HSP's gapped: 12664 Number of HSP's successfully gapped: 10 Length of query: 428 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 312 Effective length of database: 68,868,219 Effective search space: 21486884328 Effective search space used: 21486884328 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
