ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf33o05 |
|---|---|
| Clone Library Name | barley_pub |
>Q9SZ11:GLPQ2_ARATH Probable glycerophosphoryl diester phosphodiesterase 2 precursor -| Arabidopsis thaliana (Mouse-ear cress) Length = 759 Score = 199 bits (507), Expect(2) = 5e-55 Identities = 116/269 (43%), Positives = 156/269 (57%), Gaps = 1/269 (0%) Frame = -1 Query: 2050 ISMLTAMISNPFGKSTLSRNPRSRNAGKFMRLSDFLAFAKGE-DLSGIMITVEVSMHLNM 1874 I LT ISNP+ ++L RNP+ +NAGK LSDFL+ AK LSG++I+VE Sbjct: 448 IQTLTPAISNPYRVTSLFRNPKQKNAGKLFSLSDFLSLAKNSTSLSGVLISVE------- 500 Query: 1873 LQTHN*MMYSCHFLHLLLNRLAKRRLFVDENDNTDRFIGFSQHASFMAEKLGFGVVDAVI 1694 +A+++ E+ G VV AV+ Sbjct: 501 ------------------------------------------NAAYLREEQGLDVVKAVL 518 Query: 1693 KAVDDSGYSKQTAQKVMIQSTNSSTLVKFKQLAKYNLVYKIDEEVKDAAPSSLADIKKFA 1514 + +GYS TA KVMIQSTNSS LV FK+ ++Y VYK++E ++D S++ DIKKFA Sbjct: 519 DTLTQTGYSNSTATKVMIQSTNSSVLVDFKKQSQYETVYKVEENIRDILDSAIEDIKKFA 578 Query: 1513 DAVSVSIKSVYPETSNFLTNQTNPLVKSLQSAGLPVYVYLLMNEFLSQPYDFFSDATAQI 1334 DAV + SV+P +F+T QTN +V+ LQ + LPVYV L NEFLSQPYDFF+DAT +I Sbjct: 579 DAVVIQKLSVFPVAQSFITTQTN-VVEKLQKSQLPVYVELFQNEFLSQPYDFFADATVEI 637 Query: 1333 NALVHKGVEGGGVDGLITDFPGTAHRYKR 1247 N+ + G G++G IT+FP TA RYKR Sbjct: 638 NSY----ITGAGINGTITEFPFTAARYKR 662 Score = 37.7 bits (86), Expect(2) = 5e-55 Identities = 28/74 (37%), Positives = 35/74 (47%) Frame = -2 Query: 1164 NSCRKMGDKTPYYMLPPQRGGLLGVIPDKXXXXXXXXXXPVLTDSDVAEPPLPPVSNTTG 985 N C + PY M P Q G LL ++ PV TD+DV EPPLPPV T Sbjct: 663 NLCLGRKETIPY-MAPAQPGALLTLV-SPTAFPPAEAPNPVFTDADVTEPPLPPV---TA 717 Query: 984 PAPSHAASRIRTDA 943 AP+ + T+A Sbjct: 718 KAPTSSPGTPSTNA 731 Score = 38.9 bits (89), Expect = 0.093 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 1/110 (0%) Frame = -1 Query: 1543 SSLADIKKFADAVSVSIKSVYP-ETSNFLTNQTNPLVKSLQSAGLPVYVYLLMNEFLSQP 1367 S+L +K FA + V + P + +L T+ LV+ AGL V+V N+ + Sbjct: 250 SNLTFVKTFASGILVPKSYILPLDDQQYLLPHTS-LVQDAHKAGLEVFVSGFAND-IDIA 307 Query: 1366 YDFFSDATAQINALVHKGVEGGGVDGLITDFPGTAHRYKRASSSSCLSFI 1217 +D+ D ++ + V G VDG+++DFP TA ++S C S + Sbjct: 308 HDYSFDPVSEYLSFVDNG--NFSVDGVLSDFPITA-----SASLDCFSHV 350
>Q9FJ62:GLPQ1_ARATH Probable glycerophosphoryl diester phosphodiesterase 1 precursor -| Arabidopsis thaliana (Mouse-ear cress) Length = 766 Score = 185 bits (469), Expect(2) = 8e-53 Identities = 114/279 (40%), Positives = 160/279 (57%), Gaps = 3/279 (1%) Frame = -1 Query: 2050 ISMLTAMISNPFGKS-TLSRNPRSRNAGKFMRLSDFLAFAKGED-LSGIMITVEVSMHLN 1877 I L I NP+ + T+ RNPR R++GKF+ LSDFL AK L+G++I+VE Sbjct: 453 IQTLRPAIENPYSREFTMFRNPRERSSGKFVSLSDFLNLAKNSSSLTGVLISVE------ 506 Query: 1876 MLQTHN*MMYSCHFLHLLLNRLAKRRLFVDENDNTDRFIGFSQHASFMAEKLGFGVVDAV 1697 +A+++ EK G V AV Sbjct: 507 -------------------------------------------NATYLREKQGLDAVKAV 523 Query: 1696 IKAVDDSGYS-KQTAQKVMIQSTNSSTLVKFKQLAKYNLVYKIDEEVKDAAPSSLADIKK 1520 + + ++GYS K T +VMIQSTNSS L+ FK+ ++Y VYK++E ++D +++ DIKK Sbjct: 524 LDTLTEAGYSNKTTTTRVMIQSTNSSVLIDFKKQSRYETVYKVEETIRDILDTAIEDIKK 583 Query: 1519 FADAVSVSIKSVYPETSNFLTNQTNPLVKSLQSAGLPVYVYLLMNEFLSQPYDFFSDATA 1340 FADAV +S KSV+P + +F T QT LV+ LQ LPVYV + NEF+SQP+DFF+DAT Sbjct: 584 FADAVVISKKSVFPTSESFTTGQTK-LVERLQKFQLPVYVEVFRNEFVSQPWDFFADATV 642 Query: 1339 QINALVHKGVEGGGVDGLITDFPGTAHRYKRASSSSCLS 1223 +IN+ V G G++G IT+FP TA RYKR +SCL+ Sbjct: 643 EINS----HVTGAGINGTITEFPLTAARYKR---NSCLT 674 Score = 45.1 bits (105), Expect(2) = 8e-53 Identities = 30/72 (41%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Frame = -2 Query: 1164 NSCRKMGDKTPYYMLPPQRGGLLGVIPDKXXXXXXXXXXPVLTDSDVAEPPLPPVS---N 994 NSC D PY M+P Q GLL ++ PV TD+DV EPPLPPVS Sbjct: 670 NSCLTRKDVPPY-MIPVQPAGLLTIV-SPASLPPAEAPSPVFTDADVTEPPLPPVSARAP 727 Query: 993 TTGPAPSHAASR 958 TT P P + Sbjct: 728 TTTPGPQSTGEK 739 Score = 42.7 bits (99), Expect = 0.006 Identities = 34/108 (31%), Positives = 53/108 (49%) Frame = -1 Query: 1540 SLADIKKFADAVSVSIKSVYPETSNFLTNQTNPLVKSLQSAGLPVYVYLLMNEFLSQPYD 1361 +L +K FA V V ++P S +L +T+ V+ AGL VY N+F Y+ Sbjct: 257 NLTFLKTFASGVLVPKSYIWPIESQYLLPRTS-FVQDAHKAGLEVYASGFGNDF-DLAYN 314 Query: 1360 FFSDATAQINALVHKGVEGGGVDGLITDFPGTAHRYKRASSSSCLSFI 1217 + D A+ + + G VDGL++DFP TA +S+ C S + Sbjct: 315 YSFDPLAEYLSFMDNG--DFSVDGLLSDFPLTA-----SSAVDCFSHL 355
>Q7Y208:GLPQ3_ARATH Probable glycerophosphoryl diester phosphodiesterase 3 precursor -| Arabidopsis thaliana (Mouse-ear cress) Length = 763 Score = 187 bits (475), Expect(2) = 3e-50 Identities = 116/270 (42%), Positives = 154/270 (57%), Gaps = 2/270 (0%) Frame = -1 Query: 2050 ISMLTAMISNPFGKSTLSRNPRSRNAGKFMRLSDFLAFAKG-EDLSGIMITVEVSMHLNM 1874 I LT ISNPF + RNPR +N+GK + LS FL AK LSG++I+VE Sbjct: 454 IQSLTPAISNPFRVYRIFRNPREKNSGKLISLSQFLDLAKTYTSLSGVLISVE------- 506 Query: 1873 LQTHN*MMYSCHFLHLLLNRLAKRRLFVDENDNTDRFIGFSQHASFMAEKLGFGVVDAVI 1694 +A+++ EK G VV AV+ Sbjct: 507 ------------------------------------------NAAYLREKQGLDVVQAVL 524 Query: 1693 KAVDDSGYSK-QTAQKVMIQSTNSSTLVKFKQLAKYNLVYKIDEEVKDAAPSSLADIKKF 1517 + ++GYS T KVMIQSTNSS LV FK+ +KY VYKI+E + + S++ DIKKF Sbjct: 525 DTLTEAGYSNGTTTTKVMIQSTNSSVLVDFKKQSKYETVYKIEETIGNIRDSAIEDIKKF 584 Query: 1516 ADAVSVSIKSVYPETSNFLTNQTNPLVKSLQSAGLPVYVYLLMNEFLSQPYDFFSDATAQ 1337 A+AV ++ SV+P + +FLT QTN +V+ LQ + LPVYV L NEF+SQ YDFFSDAT + Sbjct: 585 ANAVVINKDSVFPNSDSFLTGQTN-VVERLQKSQLPVYVELFRNEFVSQAYDFFSDATVE 643 Query: 1336 INALVHKGVEGGGVDGLITDFPGTAHRYKR 1247 INA ++ G G++G IT+FP TA RYKR Sbjct: 644 INAYIY----GAGINGTITEFPFTAARYKR 669 Score = 33.9 bits (76), Expect(2) = 3e-50 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 8/88 (9%) Frame = -2 Query: 1143 DKTPYYMLPPQRGGLLGVIPDKXXXXXXXXXXPVLTDSDVAEPPLPPV----SNTTGPAP 976 ++ P YMLP GGLL V+ + ++DV EPPL PV +T P Sbjct: 676 EEVPPYMLPVNPGGLLNVMSPLSLPPAQAPNQDFI-EADVTEPPLSPVIAKAPTSTPGTP 734 Query: 975 SHAA----SRIRTDAGVMLLVLCASLLI 904 S A + R ++L V SLL+ Sbjct: 735 STIAQAPSGQTRLKLSLLLSVFFLSLLL 762 Score = 41.6 bits (96), Expect = 0.014 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 1/110 (0%) Frame = -1 Query: 1543 SSLADIKKFADAVSVSIKSVYP-ETSNFLTNQTNPLVKSLQSAGLPVYVYLLMNEFLSQP 1367 S+L +K FA + V + P + +L T+ LV+ AGL VYV N+ + Sbjct: 256 SNLTFVKTFASGILVPKSYILPLDDEQYLVPHTS-LVQDAHKAGLQVYVSGFAND-VDIA 313 Query: 1366 YDFFSDATAQINALVHKGVEGGGVDGLITDFPGTAHRYKRASSSSCLSFI 1217 Y++ SD ++ + V G VDG+++DFP TA +++ C S I Sbjct: 314 YNYSSDPVSEYLSFVDNG--DFSVDGVLSDFPITA-----SAAVDCFSHI 356
>P09394:GLPQ_ECOLI Glycerophosphoryl diester phosphodiesterase precursor - Escherichia| coli Length = 358 Score = 36.6 bits (83), Expect = 0.46 Identities = 25/98 (25%), Positives = 46/98 (46%) Frame = -1 Query: 1546 PSSLADIKKFADAVSVSIKSVYPETSNFLTNQTNPLVKSLQSAGLPVYVYLLMNEFLSQP 1367 P ++ + ++AD + + ETS + +V+ Q L V+ Y + ++ L Sbjct: 264 PGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLP-- 321 Query: 1366 YDFFSDATAQINALVHKGVEGGGVDGLITDFPGTAHRY 1253 ++ D +AL +K GV+GL TDFP A ++ Sbjct: 322 -EYTPDVNQLYDALYNK----AGVNGLFTDFPDKAVKF 354
>Q8RFJ8:SYA_FUSNN Alanyl-tRNA synthetase - Fusobacterium nucleatum subsp. nucleatum| Length = 867 Score = 36.2 bits (82), Expect = 0.60 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 11/109 (10%) Frame = -1 Query: 1732 AEKLGFGVVDAVIKAVDDSGYSKQTAQKVMIQSTNSSTLVKFKQLAKYNLVYKIDEEVKD 1553 A + F V D VI + + GY ++++ ++ L+ +K L Y +V K+ E+ + Sbjct: 279 ARAVTFLVNDGVIPSNEGRGY---ILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEI 335 Query: 1552 AAPSSLADIK-----------KFADAVSVSIKSVYPETSNFLTNQTNPL 1439 A P +++ KF++ + I+ V E N LTN N L Sbjct: 336 AYPDLRKNVENIRKIVKIEEEKFSNTLDQGIQLVNQEIDNLLTNGKNKL 384
>P15268:MOSA_MAIZE Autonomous transposable element EN-1 mosaic protein - Zea mays| (Maize) Length = 621 Score = 35.8 bits (81), Expect = 0.79 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = +2 Query: 809 HHPQILVQPNQKEK*IARYIEQVAEKNGPQS 901 +HP+IL N EK +ARYI+ V EKNGP + Sbjct: 363 NHPEILNDSNATEK-LARYIDNVREKNGPDT 392
>Q45206:VSP11_BORHE Variable small protein 11 precursor - Borrelia hermsii| Length = 205 Score = 33.1 bits (74), Expect = 5.1 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Frame = -1 Query: 1639 QSTNSSTLVKFKQLAKYNLVYKIDEEVK---DAAPSSLADIKKFADAVSVSIKSVYPETS 1469 ++ N L KFK AK N K DEE K D +S ++KK AV +K+ S Sbjct: 134 KNANDGLLSKFKSSAKDNESVKKDEEAKKVIDRTNASATELKKLDTAVDELLKAANEAVS 193 Query: 1468 NFLTNQTNP 1442 + T P Sbjct: 194 AAIAELTAP 202
>Q4HXF0:GUAA_GIBZE GMP synthase [glutamine-hydrolyzing] - Gibberella zeae (Fusarium| graminearum) Length = 522 Score = 33.1 bits (74), Expect = 5.1 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -1 Query: 1042 VDGLGRGGAAPSSCEQHHRSGALPRRLQN 956 V+ L GAA S+ + HH +G LP R+QN Sbjct: 334 VESLSFKGAASSTIKSHHNAGGLPARMQN 362
>Q5M2F6:RPOC_STRT2 DNA-directed RNA polymerase beta' chain - Streptococcus thermophilus| (strain ATCC BAA-250 / LMG 18311) Length = 1212 Score = 32.7 bits (73), Expect = 6.7 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = -3 Query: 572 ILGRDTLIAPIAAGCLCGHGRDRFGLSPIYIYCTSNGVCLHAHGRGAAGGEVRSV 408 I+G DTLI A + G + + ++ T +GVC H +G A G+ V Sbjct: 862 IVGPDTLITEDMAAAIVNAGVEEVTIRSVFTCKTRHGVCRHCYGINLATGDAVEV 916
>Q5LXV4:RPOC_STRT1 DNA-directed RNA polymerase beta' chain - Streptococcus thermophilus| (strain CNRZ 1066) Length = 1212 Score = 32.7 bits (73), Expect = 6.7 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = -3 Query: 572 ILGRDTLIAPIAAGCLCGHGRDRFGLSPIYIYCTSNGVCLHAHGRGAAGGEVRSV 408 I+G DTLI A + G + + ++ T +GVC H +G A G+ V Sbjct: 862 IVGPDTLITEDMAAAIVNAGVEEVTIRSVFTCKTRHGVCRHCYGINLATGDAVEV 916
>Q63TP8:IF2_BURPS Translation initiation factor IF-2 - Burkholderia pseudomallei| (Pseudomonas pseudomallei) Length = 975 Score = 32.7 bits (73), Expect = 6.7 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 8/85 (9%) Frame = -1 Query: 1711 VVDAVIKAVDDSGYSKQTAQKVMIQSTNSSTLVKFKQLAK--------YNLVYKIDEEVK 1556 +V + + + +S + TA K +I N+ + ++LA+ YN++Y +EVK Sbjct: 806 IVHSAVGGISESDVNLATASKAVIIGFNTRADAQARKLAEANGIDIRYYNIIYDAVDEVK 865 Query: 1555 DAAPSSLADIKKFADAVSVSIKSVY 1481 A LA K+ V ++ V+ Sbjct: 866 AAMSGMLAPEKREVVTGMVEVRQVF 890
>Q3JSY9:IF2_BURP1 Translation initiation factor IF-2 - Burkholderia pseudomallei| (strain 1710b) Length = 975 Score = 32.7 bits (73), Expect = 6.7 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 8/85 (9%) Frame = -1 Query: 1711 VVDAVIKAVDDSGYSKQTAQKVMIQSTNSSTLVKFKQLAK--------YNLVYKIDEEVK 1556 +V + + + +S + TA K +I N+ + ++LA+ YN++Y +EVK Sbjct: 806 IVHSAVGGISESDVNLATASKAVIIGFNTRADAQARKLAEANGIDIRYYNIIYDAVDEVK 865 Query: 1555 DAAPSSLADIKKFADAVSVSIKSVY 1481 A LA K+ V ++ V+ Sbjct: 866 AAMSGMLAPEKREVVTGMVEVRQVF 890
>Q62KK9:IF2_BURMA Translation initiation factor IF-2 - Burkholderia mallei (Pseudomonas| mallei) Length = 975 Score = 32.7 bits (73), Expect = 6.7 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 8/85 (9%) Frame = -1 Query: 1711 VVDAVIKAVDDSGYSKQTAQKVMIQSTNSSTLVKFKQLAK--------YNLVYKIDEEVK 1556 +V + + + +S + TA K +I N+ + ++LA+ YN++Y +EVK Sbjct: 806 IVHSAVGGISESDVNLATASKAVIIGFNTRADAQARKLAEANGIDIRYYNIIYDAVDEVK 865 Query: 1555 DAAPSSLADIKKFADAVSVSIKSVY 1481 A LA K+ V ++ V+ Sbjct: 866 AAMSGMLAPEKREVVTGMVEVRQVF 890
>Q46ZP1:IF2_RALEJ Translation initiation factor IF-2 - Ralstonia eutropha (strain| JMP134) (Alcaligenes eutrophus) Length = 966 Score = 32.3 bits (72), Expect = 8.7 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 8/85 (9%) Frame = -1 Query: 1711 VVDAVIKAVDDSGYSKQTAQKVMIQSTNSSTLVKFKQLAK--------YNLVYKIDEEVK 1556 +V A + A+ +S + TA K +I N ++LA+ YN++Y +E+K Sbjct: 797 IVHAGVGAISESDVNLATASKAVIIGFNVRADAGARKLAENHGIDIRYYNIIYDAVDEIK 856 Query: 1555 DAAPSSLADIKKFADAVSVSIKSVY 1481 A LA K+ V ++ V+ Sbjct: 857 AAMSGMLAPEKRETTIGQVEVRQVF 881
>Q2KV65:CHEB1_BORA1 Chemotaxis response regulator protein-glutamate methylesterase 1 -| Bordetella avium (strain 197N) Length = 342 Score = 32.3 bits (72), Expect = 8.7 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = -1 Query: 1750 QHASFMAEKLGFGVVDAVIKAVDDSGYSKQTAQKVMIQSTNSSTLVKFKQLA 1595 QH S + E +G G +DAV V G K AQ+++ + N+ L+ K +A Sbjct: 85 QHTSLVFEAMGHGALDAVDTPVLGRGDPKAAAQRLLRKIRNAGWLIGKKTVA 136 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 390,826,451 Number of extensions: 8678217 Number of successful extensions: 28723 Number of sequences better than 10.0: 15 Number of HSP's gapped: 28665 Number of HSP's successfully gapped: 24 Length of query: 754 Length of database: 100,686,439 Length adjustment: 121 Effective length of query: 633 Effective length of database: 67,496,744 Effective search space: 42725438952 Effective search space used: 42725438952 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
