ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf33n20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK120362:Os08g0531200 30 4.9
2AK111902:Os08g0126700 30 4.9
3AK111805:Os08g0126700 30 4.9
4AK062594:Os07g0187900 30 4.9
5AK068480:Os02g0137400 30 6.3

>AK120362:Os08g0531200 |
          Length = 892
 Score = 30.4 bits (67), Expect = 4.9
 Identities = 18/76 (23%), Positives = 33/76 (43%)
 Frame = +1

Query: 1750 TEGSSTCSSGANFIGLDKPNDGVTSKNFSQLSGGNNMGHTTGWCHTADMSSPSQTTDSAR 1929
            T  +ST +        ++PN G     F Q    N +  T  WC++    + + T    +
Sbjct: 321  TASTSTPTEVTKIYCNEQPNQGAADNEFGQKRKRNPIIVTPAWCYS---EATTGTLQHEQ 377

Query: 1930 NQQMNSNAAR*LNLYE 1977
            N   +SN AR  ++++
Sbjct: 378  NSSSHSNGARSYDIWK 393



to top

>AK111902:Os08g0126700 |
          Length = 604

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 21/82 (25%), Positives = 37/82 (45%)
 Frame = +3

Query: 1185 TLASLPVTLVGQIPRDLQAPAEITEQMRNGRRPLNLTRSGVTGNGKLLLVHGYCANGNPF 1364
            ++ASLP     +  + LQA   +TE  R+G+   +LTR  ++   K+ ++       +  
Sbjct: 285  SIASLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRL-LSRLNKIRVIERPHGQHSVV 343

Query: 1365 TASDFTNYLEFNDPNANRNLDT 1430
             A D   Y++F         DT
Sbjct: 344  LAEDAAKYMDFRGGGGGGGGDT 365



to top

>AK111805:Os08g0126700 |
          Length = 604

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 21/82 (25%), Positives = 37/82 (45%)
 Frame = +3

Query: 1185 TLASLPVTLVGQIPRDLQAPAEITEQMRNGRRPLNLTRSGVTGNGKLLLVHGYCANGNPF 1364
            ++ASLP     +  + LQA   +TE  R+G+   +LTR  ++   K+ ++       +  
Sbjct: 285  SIASLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRL-LSRLNKIRVIERPHGQHSVV 343

Query: 1365 TASDFTNYLEFNDPNANRNLDT 1430
             A D   Y++F         DT
Sbjct: 344  LAEDAAKYMDFRGGGGGGGGDT 365



to top

>AK062594:Os07g0187900 |
          Length = 253

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = +1

Query: 1747 TTEGSSTCSSGANFIGLDKPNDGVTSKNFSQLSGGNNMGHTTGWCHTADMSSPSQTTDSA 1926
            T  G+ T SS ++  G         S      SGG + G    WC  A  SSP+  T S+
Sbjct: 15   TRRGAPTPSSPSSASGTTPAASPPASPRRRSSSGGASRGR---WCSPASSSSPAPATSSS 71

Query: 1927 RN 1932
            R+
Sbjct: 72   RS 73



 Score = 30.0 bits (66), Expect = 6.3
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 796 PASVSVKAPAKVPSFTSPSLWR-PSSNIGMLISSPSGSTTK 677
           P+S    A +  P  T+ + WR PS+      SSP GSTT+
Sbjct: 99  PSSPRCSASSTTPRSTTSAAWRAPSAPTSSTSSSPGGSTTR 139



to top

>AK068480:Os02g0137400 |
          Length = 858

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
 Frame = +3

Query: 642 LGNSNFILSLETFVVDPDGEEINIPMFDDGLHN---DGDVNDGTFAGALTLTEAGSYVLE 812
           + +S F+ +  +  V   GE+  + +  +G+ +   DG VN+    G  T+T+ GS  L+
Sbjct: 132 VSDSQFLDTTHSLAVSLLGEDSLMQVHPNGIRHIREDGRVNEWRTPGKKTITKVGSNRLQ 191

Query: 813 TVATGVDPNGNYISRSTMNYFSAVKSDLQIAYATATVDGDVAEIAI 950
            V          +S   + YF    +   +      + GDVA +AI
Sbjct: 192 VVIA--------LSGGELIYFEMDMTGQLMEVEKQDMSGDVACLAI 229


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 49,691,170
Number of extensions: 1035386
Number of successful extensions: 2895
Number of sequences better than 10.0: 5
Number of HSP's gapped: 2893
Number of HSP's successfully gapped: 6
Length of query: 670
Length of database: 15,399,855
Length adjustment: 107
Effective length of query: 563
Effective length of database: 11,115,468
Effective search space: 6258008484
Effective search space used: 6258008484
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top