ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf33n20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os10g08280:12010.t00652:unspliced-genomic expressed protein 40 0.043
2LOC_Os05g35650:12005.t03160:unspliced-genomic peptide transp... 40 0.081
3LOC_Os09g07380:12009.t00534:unspliced-genomic ABI3-interacti... 36 1.0
4LOC_Os02g34790:12002.t03118:unspliced-genomic receptor-like ... 36 1.0
5LOC_Os01g05340:12001.t00419:unspliced-genomic hypothetical p... 35 2.6
6LOC_Os10g18480:12010.t01396:unspliced-genomic indole-3-aceta... 26 2.7
7LOC_Os05g43210:12005.t03812:unspliced-genomic hypothetical p... 34 3.6
8LOC_Os02g19490:12002.t01742:unspliced-genomic retrotransposo... 34 3.6
9LOC_Os11g18990:12011.t01669:unspliced-genomic expressed protein 34 5.0
10LOC_Os09g32300:12009.t03475:unspliced-genomic nucleic acid b... 34 5.0
11LOC_Os10g41000:12010.t03337:unspliced-genomic retrotransposo... 27 6.2
12LOC_Os04g42500:12004.t03799:unspliced-genomic trafficking pr... 32 6.4
13LOC_Os05g01150:12005.t00019:unspliced-genomic transposon pro... 33 6.9
14LOC_Os02g58170:12002.t05388:unspliced-genomic transposon pro... 33 6.9
15LOC_Os01g13470:12001.t01209:unspliced-genomic nucleic acid b... 33 6.9
16LOC_Os12g33500:12012.t03039:unspliced-genomic retrotransposo... 33 9.4
17LOC_Os11g03270:12011.t00218:unspliced-genomic nucleoside-tri... 33 9.4
18LOC_Os06g20750:12006.t01892:unspliced-genomic transposon pro... 33 9.4
19LOC_Os04g52670:12004.t04741:unspliced-genomic OsSAUR21 - Aux... 33 9.4
20LOC_Os03g55010:12003.t04764:unspliced-genomic cytokinin-O-gl... 33 9.4

>LOC_Os10g08280:12010.t00652:unspliced-genomic expressed protein|
          Length = 1802
 Score = 40.5 bits (82), Expect = 0.043
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2 / +3

                                           
Query: 557 RLEDL*HRRPPCRTNRHCHRRSRYHKCVTWKL 652
           RL  L  RRP  R  RH HRRS  H+C  W++
Sbjct: 345 RLLLLLRRRPRHRRRRHRHRRSNLHRCTAWEM 440



to top

>LOC_Os05g35650:12005.t03160:unspliced-genomic peptide transporter PTR2-B, putative, expressed|
          Length = 19879

 Score = 39.6 bits (80), Expect = 0.081
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = -2 / +1

                                                              
Query: 1378  KSEAVNGLPLAQYPWTSKSLPLPVTPDLVRLRGRRPLRICSVISAGAWR 1232
             ++ A+     +Q   ++ SLPLP      R RGRRP R+C+V +A  +R
Sbjct: 12535 RARALEPAAPSQVLLSAPSLPLPARRSRARPRGRRPRRVCAVRAAARFR 12681



to top

>LOC_Os09g07380:12009.t00534:unspliced-genomic ABI3-interacting protein 2, putative, expressed|
          Length = 5582

 Score = 35.9 bits (72), Expect = 1.0
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1 / +3

                                                        
Query: 340 LLMESFLNLNSVFLSMIFSQQLATPLMPLKSAHGLSKLPTLIPSL 474
           L++ S  +L + FLS++ + Q+   L P K+ H     PTL PS+
Sbjct: 279 LILASLPDLEASFLSILITLQITVCLFPQKNLHHSIPCPTLDPSM 413



to top

>LOC_Os02g34790:12002.t03118:unspliced-genomic receptor-like protein kinase 5 precursor, putative, expressed|
          Length = 4300

 Score = 35.9 bits (72), Expect = 1.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -2 / -3

                                          
Query: 1333 TSKSLPLPVTPDLVRLRGRRPLRICSVISA 1244
            ++ SLPLP      R RGRRP R C+V +A
Sbjct: 278  SAPSLPLPARRSRARPRGRRPRRACAVCAA 189



to top

>LOC_Os01g05340:12001.t00419:unspliced-genomic hypothetical protein|
          Length = 1727

 Score = 34.5 bits (69), Expect = 2.6
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = -2 / +2

                                        
Query: 1354 PLAQYPWTSKSLPLPVTPDLVRLRGRRP 1271
            P + YP  S +LPL VT D VRL G RP
Sbjct: 299  PSSAYPCGSSTLPLLVTSDPVRLVGPRP 382



to top

>LOC_Os10g18480:12010.t01396:unspliced-genomic indole-3-acetate beta-glucosyltransferase, putative|
          Length = 867

 Score = 25.8 bits (50), Expect(3) = 2.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2 / -3

                        
Query: 587 PCRTNRHCHRRSR 625
           PC   RHC RR R
Sbjct: 490 PCHGRRHCRRRRR 452



 Score = 25.4 bits (49), Expect(3) = 2.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3 / -1

                                     
Query: 684 VDPDGEEINIPMFDDGLHNDGDVNDG 761
           ++P GE + +   + G   +GDV+DG
Sbjct: 366 LEPQGELLELAPVEHGEAAEGDVHDG 289



 Score = 23.1 bits (44), Expect(3) = 2.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1 / -2

                             
Query: 1684 SGAQKWLSGIPAEKQAK 1734
            SG QKW +G+P     +
Sbjct: 245  SGRQKWPTGLPGRSPVR 195



to top

>LOC_Os05g43210:12005.t03812:unspliced-genomic hypothetical protein|
          Length = 1147

 Score = 34.1 bits (68), Expect = 3.6
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2 / -2

                                   
Query: 1324 SLPLPVTPDLVRLRGRRPLRICS 1256
            SLPLP      R RGRRP R+C+
Sbjct: 588  SLPLPARRSRARQRGRRPRRVCA 520



to top

>LOC_Os02g19490:12002.t01742:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 2578

 Score = 34.1 bits (68), Expect = 3.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2 / -2

                             
Query: 1684 IWSNHHLFHIQLQKFHQ 1634
            +W NHH+F ++LQ FHQ
Sbjct: 1665 MWLNHHVFAVKLQDFHQ 1615



to top

>LOC_Os11g18990:12011.t01669:unspliced-genomic expressed protein|
          Length = 6266

 Score = 33.6 bits (67), Expect = 5.0
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -1 / +3

                                                                        
Query: 200  SSAFNIDR*VTSSSDFGSLLRSRQYK*REFRRISLKMFIINTLYCNKEKSQEQCVLHSFQ 21
            SS F + + + S S    L  S QYK*+  +   L   + N L+   +K     +   F 
Sbjct: 4443 SSMFALTKQMISLSQMNGLSFSTQYK*KATKSFELFP*V*NDLFLESQKYSPWILKEHFD 4622

                
Query: 20   SFQC 9
            SF+C
Sbjct: 4623 SFEC 4634



to top

>LOC_Os09g32300:12009.t03475:unspliced-genomic nucleic acid binding protein, putative, expressed|
          Length = 6219

 Score = 33.6 bits (67), Expect = 5.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2 / +3

                                            
Query: 248  QFLLHDPIYCGYSRYAPRLFHLANP*TNCECS 343
            Q LLH  I+CG  +  P  F L +P T+C C+
Sbjct: 4941 QSLLHAFIFCGLYQT*P*AFRLVSPLTDCTCT 5036



to top

>LOC_Os10g41000:12010.t03337:unspliced-genomic retrotransposon protein, putative, unclassified, expressed|
          Length = 4153

 Score = 27.2 bits (53), Expect(2) = 6.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2 / -2

                                     
Query: 743  RRCKRWHLCWSFNAH*SWKLCIRNC 817
            R C+ WH C + +     KL ++ C
Sbjct: 1572 RSCRHWHSCLAVSESRGTKLAVKPC 1498



 Score = 23.1 bits (44), Expect(2) = 6.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2 / -3

                         
Query: 584  PPCRTNRHCHRRS 622
            PPC    HC R+S
Sbjct: 1619 PPCECPAHCLRKS 1581



to top

>LOC_Os04g42500:12004.t03799:unspliced-genomic trafficking protein particle complex protein 2, putative, expressed|
          Length = 3098

 Score = 31.8 bits (63), Expect(2) = 6.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2 / -1

                                              
Query: 1690 HQIWSNHHLFHIQLQKFHQFQQVLQPMQFPDKEI 1589
            HQ+  N+ +  ++L KFH   QV Q  Q   K++
Sbjct: 1580 HQVKENNIVVQVKLNKFHIVSQVTQQQQIVSKDM 1479



 Score = 24.4 bits (47), Expect(2) = 6.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1 / -3

                               
Query: 977  YTSFRTSVLDCDLRYISVN 921
            Y SFR + L C + Y+S N
Sbjct: 1377 YKSFRKASLACRILYVSYN 1321



to top

>LOC_Os05g01150:12005.t00019:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class|
          Length = 3261

 Score = 33.1 bits (66), Expect = 6.9
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2 / -2

                            
Query: 722  R*WSPQ*RRCKRWHLC 769
            R*WSP  R C RWH C
Sbjct: 3086 R*WSPVDRSCDRWHTC 3039



to top

>LOC_Os02g58170:12002.t05388:unspliced-genomic transposon protein, putative, Ac/Ds sub-class|
          Length = 7998

 Score = 33.1 bits (66), Expect = 6.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3 / -3

                                                       
Query: 957  TGSEAGVTNYLAYAEVWGTSSTGSEVPVAWVSAISDASSDIQL 1085
            +G   G    L+  E W T S   + P  W+S +SD  +D  L
Sbjct: 1804 SGGGGGEEEALSKLEAWATCSGPPDAPWNWISHLSDIDADSTL 1676



to top

>LOC_Os01g13470:12001.t01209:unspliced-genomic nucleic acid binding protein, putative, expressed|
          Length = 5556

 Score = 33.1 bits (66), Expect = 6.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1 / -1

                                         
Query: 320  GLPSGITWGHTLNIRSKWDHEAEIALSRG 234
            G+  G++ GH L ++  W+ E  +AL +G
Sbjct: 1887 GVQVGLSHGHALELQENWEDEQHLALEKG 1801



to top

>LOC_Os12g33500:12012.t03039:unspliced-genomic retrotransposon, putative, centromere-specific|
          Length = 1808

 Score = 32.7 bits (65), Expect = 9.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3 / -3

                                                    
Query: 1269 NGRRPLNLTRSGVTGNGKLLLVHGYCANGNPFTASDFTNY 1388
            NG   + L +  +T   K  LVHG C N  P  A+ F  Y
Sbjct: 1236 NGISFVQLGKKYITDQHKSFLVHGSCTNDTPHLATGFHLY 1117



to top

>LOC_Os11g03270:12011.t00218:unspliced-genomic nucleoside-triphosphatase, putative|
          Length = 6059

 Score = 32.7 bits (65), Expect = 9.4
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3 / +2

                                                          
Query: 1086 ELDLAWVAKANAIAPFTLKNVRIQDSNIQTVLTTLASLPVTLVGQI 1223
            +L +AW+ +  A  P+ +++  I  SN+  +L   +S    ++GQI
Sbjct: 2585 QLHVAWIQRCQASFPYLVQDANIDKSNVWPMLNN*SSDVYFIMGQI 2722



to top

>LOC_Os06g20750:12006.t01892:unspliced-genomic transposon protein, putative, Mutator sub-class|
          Length = 3559

 Score = 32.7 bits (65), Expect = 9.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2 / -1

                                 
Query: 575  HRRPPCRTNRHCHRRSRYHKC 637
            H  PPC+ + HC +    H+C
Sbjct: 1090 HHHPPCQPHNHCQQSQDLHRC 1028



to top

>LOC_Os04g52670:12004.t04741:unspliced-genomic OsSAUR21 - Auxin-responsive SAUR gene family member, expressed|
          Length = 1067

 Score = 32.7 bits (65), Expect = 9.4
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -1 / -3

                                                                   
Query: 302 TWGHTLNIRSKWDHEAEIALSRGIAINASAPYRISSAFNIDR*VTSSSDFGSLLRS 135
           T G  L +R +WD   ++   RG   +  A    +S   +   V  SS++GS++++
Sbjct: 216 TTGGVLALRFEWDRSRDLVHRRGTPHSVRATAEFTSGAQLQPHVHVSSEYGSVMQA 49



to top

>LOC_Os03g55010:12003.t04764:unspliced-genomic cytokinin-O-glucosyltransferase 2, putative, expressed|
          Length = 2683

 Score = 32.7 bits (65), Expect = 9.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3 / -3

                                                            
Query: 684  VDPDGEEINIPMFDDGLHNDGDVNDGTFAGALTLTEAGSYVLETVATG 827
            + P GE + +P  +DG   +G V+DG     +   +A   + + VA G
Sbjct: 2048 LQPHGELLELPRVEDGQAAEGHVHDGAVGLRVEPVQAAGVLRQEVADG 1905


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 687,491,015
Number of extensions: 10078880
Number of successful extensions: 39570
Number of sequences better than 10.0: 20
Length of query: 670
Length of database: 55,613,886
Length adjustment: 52
Effective length of query: 618
Effective length of database: 52,687,430
Effective search space: 32560831740
Effective search space used: 32560831740
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
to top