| Clone Name | FLbaf33n20 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os10g08280:12010.t00652:unspliced-genomic expressed protein| Length = 1802 Score = 40.5 bits (82), Expect = 0.043 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = +2 / +3 Query: 557 RLEDL*HRRPPCRTNRHCHRRSRYHKCVTWKL 652 RL L RRP R RH HRRS H+C W++ Sbjct: 345 RLLLLLRRRPRHRRRRHRHRRSNLHRCTAWEM 440
>LOC_Os05g35650:12005.t03160:unspliced-genomic peptide transporter PTR2-B, putative, expressed| Length = 19879 Score = 39.6 bits (80), Expect = 0.081 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = -2 / +1 Query: 1378 KSEAVNGLPLAQYPWTSKSLPLPVTPDLVRLRGRRPLRICSVISAGAWR 1232 ++ A+ +Q ++ SLPLP R RGRRP R+C+V +A +R Sbjct: 12535 RARALEPAAPSQVLLSAPSLPLPARRSRARPRGRRPRRVCAVRAAARFR 12681
>LOC_Os09g07380:12009.t00534:unspliced-genomic ABI3-interacting protein 2, putative, expressed| Length = 5582 Score = 35.9 bits (72), Expect = 1.0 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = +1 / +3 Query: 340 LLMESFLNLNSVFLSMIFSQQLATPLMPLKSAHGLSKLPTLIPSL 474 L++ S +L + FLS++ + Q+ L P K+ H PTL PS+ Sbjct: 279 LILASLPDLEASFLSILITLQITVCLFPQKNLHHSIPCPTLDPSM 413
>LOC_Os02g34790:12002.t03118:unspliced-genomic receptor-like protein kinase 5 precursor, putative, expressed| Length = 4300 Score = 35.9 bits (72), Expect = 1.0 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -2 / -3 Query: 1333 TSKSLPLPVTPDLVRLRGRRPLRICSVISA 1244 ++ SLPLP R RGRRP R C+V +A Sbjct: 278 SAPSLPLPARRSRARPRGRRPRRACAVCAA 189
>LOC_Os01g05340:12001.t00419:unspliced-genomic hypothetical protein| Length = 1727 Score = 34.5 bits (69), Expect = 2.6 Identities = 16/28 (57%), Positives = 18/28 (64%) Frame = -2 / +2 Query: 1354 PLAQYPWTSKSLPLPVTPDLVRLRGRRP 1271 P + YP S +LPL VT D VRL G RP Sbjct: 299 PSSAYPCGSSTLPLLVTSDPVRLVGPRP 382
>LOC_Os10g18480:12010.t01396:unspliced-genomic indole-3-acetate beta-glucosyltransferase, putative| Length = 867 Score = 25.8 bits (50), Expect(3) = 2.7 Identities = 8/13 (61%), Positives = 8/13 (61%) Frame = +2 / -3 Query: 587 PCRTNRHCHRRSR 625 PC RHC RR R Sbjct: 490 PCHGRRHCRRRRR 452 Score = 25.4 bits (49), Expect(3) = 2.7 Identities = 9/26 (34%), Positives = 16/26 (61%) Frame = +3 / -1 Query: 684 VDPDGEEINIPMFDDGLHNDGDVNDG 761 ++P GE + + + G +GDV+DG Sbjct: 366 LEPQGELLELAPVEHGEAAEGDVHDG 289 Score = 23.1 bits (44), Expect(3) = 2.7 Identities = 7/17 (41%), Positives = 10/17 (58%) Frame = +1 / -2 Query: 1684 SGAQKWLSGIPAEKQAK 1734 SG QKW +G+P + Sbjct: 245 SGRQKWPTGLPGRSPVR 195
>LOC_Os05g43210:12005.t03812:unspliced-genomic hypothetical protein| Length = 1147 Score = 34.1 bits (68), Expect = 3.6 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -2 / -2 Query: 1324 SLPLPVTPDLVRLRGRRPLRICS 1256 SLPLP R RGRRP R+C+ Sbjct: 588 SLPLPARRSRARQRGRRPRRVCA 520
>LOC_Os02g19490:12002.t01742:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2578 Score = 34.1 bits (68), Expect = 3.6 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -2 / -2 Query: 1684 IWSNHHLFHIQLQKFHQ 1634 +W NHH+F ++LQ FHQ Sbjct: 1665 MWLNHHVFAVKLQDFHQ 1615
>LOC_Os11g18990:12011.t01669:unspliced-genomic expressed protein| Length = 6266 Score = 33.6 bits (67), Expect = 5.0 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = -1 / +3 Query: 200 SSAFNIDR*VTSSSDFGSLLRSRQYK*REFRRISLKMFIINTLYCNKEKSQEQCVLHSFQ 21 SS F + + + S S L S QYK*+ + L + N L+ +K + F Sbjct: 4443 SSMFALTKQMISLSQMNGLSFSTQYK*KATKSFELFP*V*NDLFLESQKYSPWILKEHFD 4622 Query: 20 SFQC 9 SF+C Sbjct: 4623 SFEC 4634
>LOC_Os09g32300:12009.t03475:unspliced-genomic nucleic acid binding protein, putative, expressed| Length = 6219 Score = 33.6 bits (67), Expect = 5.0 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +2 / +3 Query: 248 QFLLHDPIYCGYSRYAPRLFHLANP*TNCECS 343 Q LLH I+CG + P F L +P T+C C+ Sbjct: 4941 QSLLHAFIFCGLYQT*P*AFRLVSPLTDCTCT 5036
>LOC_Os10g41000:12010.t03337:unspliced-genomic retrotransposon protein, putative, unclassified, expressed| Length = 4153 Score = 27.2 bits (53), Expect(2) = 6.2 Identities = 8/25 (32%), Positives = 13/25 (52%) Frame = +2 / -2 Query: 743 RRCKRWHLCWSFNAH*SWKLCIRNC 817 R C+ WH C + + KL ++ C Sbjct: 1572 RSCRHWHSCLAVSESRGTKLAVKPC 1498 Score = 23.1 bits (44), Expect(2) = 6.2 Identities = 7/13 (53%), Positives = 8/13 (61%) Frame = +2 / -3 Query: 584 PPCRTNRHCHRRS 622 PPC HC R+S Sbjct: 1619 PPCECPAHCLRKS 1581
>LOC_Os04g42500:12004.t03799:unspliced-genomic trafficking protein particle complex protein 2, putative, expressed| Length = 3098 Score = 31.8 bits (63), Expect(2) = 6.4 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 / -1 Query: 1690 HQIWSNHHLFHIQLQKFHQFQQVLQPMQFPDKEI 1589 HQ+ N+ + ++L KFH QV Q Q K++ Sbjct: 1580 HQVKENNIVVQVKLNKFHIVSQVTQQQQIVSKDM 1479 Score = 24.4 bits (47), Expect(2) = 6.4 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -1 / -3 Query: 977 YTSFRTSVLDCDLRYISVN 921 Y SFR + L C + Y+S N Sbjct: 1377 YKSFRKASLACRILYVSYN 1321
>LOC_Os05g01150:12005.t00019:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class| Length = 3261 Score = 33.1 bits (66), Expect = 6.9 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = +2 / -2 Query: 722 R*WSPQ*RRCKRWHLC 769 R*WSP R C RWH C Sbjct: 3086 R*WSPVDRSCDRWHTC 3039
>LOC_Os02g58170:12002.t05388:unspliced-genomic transposon protein, putative, Ac/Ds sub-class| Length = 7998 Score = 33.1 bits (66), Expect = 6.9 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = +3 / -3 Query: 957 TGSEAGVTNYLAYAEVWGTSSTGSEVPVAWVSAISDASSDIQL 1085 +G G L+ E W T S + P W+S +SD +D L Sbjct: 1804 SGGGGGEEEALSKLEAWATCSGPPDAPWNWISHLSDIDADSTL 1676
>LOC_Os01g13470:12001.t01209:unspliced-genomic nucleic acid binding protein, putative, expressed| Length = 5556 Score = 33.1 bits (66), Expect = 6.9 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = -1 / -1 Query: 320 GLPSGITWGHTLNIRSKWDHEAEIALSRG 234 G+ G++ GH L ++ W+ E +AL +G Sbjct: 1887 GVQVGLSHGHALELQENWEDEQHLALEKG 1801
>LOC_Os12g33500:12012.t03039:unspliced-genomic retrotransposon, putative, centromere-specific| Length = 1808 Score = 32.7 bits (65), Expect = 9.4 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +3 / -3 Query: 1269 NGRRPLNLTRSGVTGNGKLLLVHGYCANGNPFTASDFTNY 1388 NG + L + +T K LVHG C N P A+ F Y Sbjct: 1236 NGISFVQLGKKYITDQHKSFLVHGSCTNDTPHLATGFHLY 1117
>LOC_Os11g03270:12011.t00218:unspliced-genomic nucleoside-triphosphatase, putative| Length = 6059 Score = 32.7 bits (65), Expect = 9.4 Identities = 13/46 (28%), Positives = 26/46 (56%) Frame = +3 / +2 Query: 1086 ELDLAWVAKANAIAPFTLKNVRIQDSNIQTVLTTLASLPVTLVGQI 1223 +L +AW+ + A P+ +++ I SN+ +L +S ++GQI Sbjct: 2585 QLHVAWIQRCQASFPYLVQDANIDKSNVWPMLNN*SSDVYFIMGQI 2722
>LOC_Os06g20750:12006.t01892:unspliced-genomic transposon protein, putative, Mutator sub-class| Length = 3559 Score = 32.7 bits (65), Expect = 9.4 Identities = 8/21 (38%), Positives = 12/21 (57%) Frame = +2 / -1 Query: 575 HRRPPCRTNRHCHRRSRYHKC 637 H PPC+ + HC + H+C Sbjct: 1090 HHHPPCQPHNHCQQSQDLHRC 1028
>LOC_Os04g52670:12004.t04741:unspliced-genomic OsSAUR21 - Auxin-responsive SAUR gene family member, expressed| Length = 1067 Score = 32.7 bits (65), Expect = 9.4 Identities = 15/56 (26%), Positives = 28/56 (50%) Frame = -1 / -3 Query: 302 TWGHTLNIRSKWDHEAEIALSRGIAINASAPYRISSAFNIDR*VTSSSDFGSLLRS 135 T G L +R +WD ++ RG + A +S + V SS++GS++++ Sbjct: 216 TTGGVLALRFEWDRSRDLVHRRGTPHSVRATAEFTSGAQLQPHVHVSSEYGSVMQA 49
>LOC_Os03g55010:12003.t04764:unspliced-genomic cytokinin-O-glucosyltransferase 2, putative, expressed| Length = 2683 Score = 32.7 bits (65), Expect = 9.4 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = +3 / -3 Query: 684 VDPDGEEINIPMFDDGLHNDGDVNDGTFAGALTLTEAGSYVLETVATG 827 + P GE + +P +DG +G V+DG + +A + + VA G Sbjct: 2048 LQPHGELLELPRVEDGQAAEGHVHDGAVGLRVEPVQAAGVLRQEVADG 1905 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 687,491,015 Number of extensions: 10078880 Number of successful extensions: 39570 Number of sequences better than 10.0: 20 Length of query: 670 Length of database: 55,613,886 Length adjustment: 52 Effective length of query: 618 Effective length of database: 52,687,430 Effective search space: 32560831740 Effective search space used: 32560831740 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)