ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf27p07 |
|---|---|
| Clone Library Name | barley_pub |
>P49690:RL23_ARATH 60S ribosomal protein L23 - Arabidopsis thaliana (Mouse-ear cress)| Length = 140 Score = 28.9 bits (63), Expect(2) = 0.10 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = +2 Query: 617 DMWPRIASNANAIV 658 D+WPRIAS ANAIV Sbjct: 127 DLWPRIASAANAIV 140 Score = 27.3 bits (59), Expect(2) = 0.10 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = +3 Query: 579 DNAGVIVGPRGEM 617 DNAGVIV P+GEM Sbjct: 100 DNAGVIVNPKGEM 112
>Q9XEK8:RL23_TORRU 60S ribosomal protein L23 - Tortula ruralis (Star moss) (Twisted| moss) Length = 139 Score = 28.9 bits (63), Expect(2) = 0.10 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = +2 Query: 617 DMWPRIASNANAIV 658 D+WPRIAS ANAIV Sbjct: 126 DLWPRIASAANAIV 139 Score = 27.3 bits (59), Expect(2) = 0.10 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = +3 Query: 579 DNAGVIVGPRGEM 617 DNAGVIV P+GEM Sbjct: 99 DNAGVIVNPKGEM 111
>O42867:RL23_SCHPO 60S ribosomal protein L23 - Schizosaccharomyces pombe (Fission| yeast) Length = 139 Score = 27.7 bits (60), Expect(2) = 0.22 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = +2 Query: 617 DMWPRIASNANAIV 658 D+WPRIASNA +V Sbjct: 126 DLWPRIASNAGTVV 139 Score = 27.3 bits (59), Expect(2) = 0.22 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = +3 Query: 579 DNAGVIVGPRGEM 617 DNAGVIV P+GEM Sbjct: 99 DNAGVIVNPKGEM 111
>Q07760:RL23_TOBAC 60S ribosomal protein L23 - Nicotiana tabacum (Common tobacco)| Length = 140 Score = 28.9 bits (63), Expect(2) = 0.80 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = +2 Query: 617 DMWPRIASNANAIV 658 D+WPRIAS ANAIV Sbjct: 127 DLWPRIASAANAIV 140 Score = 24.3 bits (51), Expect(2) = 0.80 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3 Query: 579 DNAGVIVGPRGEM 617 DNAGVIV +GEM Sbjct: 100 DNAGVIVNAKGEM 112
>Q817C6:ASSY_BACCR Argininosuccinate synthase - Bacillus cereus (strain ATCC 14579 /| DSM 31) Length = 401 Score = 33.5 bits (75), Expect = 1.2 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Frame = +2 Query: 392 GVPVLD-VDSRLVGFSASNMQGPTKSLPRITFEKELNKIVNSKDLKHFKHLIYMAGTDMV 568 GV +D V++RLVG + + ++ IT KEL + + K++ HFK +I T+++ Sbjct: 251 GVGRIDHVENRLVGIKSREVYECPAAMTLITAHKELEDLTHVKEVAHFKPVIEQKITELI 310
>Q90372:QNR71_COTJA Protein QNR-71 precursor - Coturnix coturnix japonica (Japanese| quail) Length = 559 Score = 33.1 bits (74), Expect = 1.6 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 11/89 (12%) Frame = -2 Query: 912 CHWQHMYATSVHR-----KSVPNQNGATQRSTVFMAHTLTSYY-----SSLDYNLEQSSQ 763 C W++ + H K P+ G +R+ V++ HT+ YY SS ++++ ++ Sbjct: 141 CGWENCTSNHSHNVFPDGKPFPHYPGWRRRNFVYLFHTVGQYYQTIGRSSANFSVNTANI 200 Query: 762 TMAFALLAILIH-SFHGTHTDIILYSLDY 679 T+ ++A+ I+ H T+ I S Y Sbjct: 201 TLGKHIMAVSIYRRGHSTYVPIARASTTY 229
>P04451:RL23_YEAST 60S ribosomal protein L23 - Saccharomyces cerevisiae (Baker's| yeast) Length = 137 Score = 26.2 bits (56), Expect(2) = 1.7 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = +2 Query: 617 DMWPRIASNANAIV 658 D+WPR+ASN+ +V Sbjct: 124 DLWPRVASNSGVVV 137 Score = 25.8 bits (55), Expect(2) = 1.7 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3 Query: 579 DNAGVIVGPRGEM 617 DNAGVI P+GEM Sbjct: 97 DNAGVIANPKGEM 109
>Q9HBD1:RC3H2_HUMAN Ring finger and CCCH-type zinc finger domain-containing protein 2 -| Homo sapiens (Human) Length = 1191 Score = 32.7 bits (73), Expect = 2.1 Identities = 32/122 (26%), Positives = 42/122 (34%), Gaps = 5/122 (4%) Frame = +3 Query: 30 PLKSSPAITL-----PHRRSVLVLADHRSLASHQIPWTPHIQSSPPDSARLPRGESGVED 194 P KSSP +T PH ++ D R+ ++P P PP P +GV Sbjct: 576 PQKSSPFLTRVPVYPPHSENIQYFQDPRTQIPFEVPQYPQTGYYPPP----PTVPAGVAP 631 Query: 195 LHPVLVRSGGQGEQGYDLLSTPHRHRCLRRIGGKRAFLSSHLLSFPAIQMKNSSHIPVVP 374 P VRS E S P+ + H +F NSS P Sbjct: 632 CVPRFVRSNNVPESSLPPASMPY---------------ADHYSTFSPRDRMNSSPYQPPP 676 Query: 375 PQ 380 PQ Sbjct: 677 PQ 678
>Q6HCP7:ASSY_BACHK Argininosuccinate synthase - Bacillus thuringiensis subsp.| konkukian Length = 401 Score = 32.3 bits (72), Expect = 2.8 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Frame = +2 Query: 392 GVPVLD-VDSRLVGFSASNMQGPTKSLPRITFEKELNKIVNSKDLKHFKHLIYMAGTDMV 568 GV +D V++RLVG + + ++ IT KEL + K++ HFK +I T+++ Sbjct: 251 GVGRIDHVENRLVGIKSREVYECPAAMTLITAHKELEDLTLVKEVAHFKPMIEQKITELI 310
>Q633G4:ASSY_BACCZ Argininosuccinate synthase - Bacillus cereus (strain ZK / E33L)| Length = 401 Score = 32.3 bits (72), Expect = 2.8 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Frame = +2 Query: 392 GVPVLD-VDSRLVGFSASNMQGPTKSLPRITFEKELNKIVNSKDLKHFKHLIYMAGTDMV 568 GV +D V++RLVG + + ++ IT KEL + K++ HFK +I T+++ Sbjct: 251 GVGRIDHVENRLVGIKSREVYECPAAMTLITAHKELEDLTLVKEVAHFKPMIEQKITELI 310
>P61520:ASSY_BACC1 Argininosuccinate synthase - Bacillus cereus (strain ATCC 10987)| Length = 401 Score = 32.3 bits (72), Expect = 2.8 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Frame = +2 Query: 392 GVPVLD-VDSRLVGFSASNMQGPTKSLPRITFEKELNKIVNSKDLKHFKHLIYMAGTDMV 568 GV +D V++RLVG + + ++ IT KEL + K++ HFK +I T+++ Sbjct: 251 GVGRIDHVENRLVGIKSREVYECPAAMTLITAHKELEDLTLVKEVAHFKPMIEQKITELI 310
>Q81KV7:ASSY_BACAN Argininosuccinate synthase - Bacillus anthracis| Length = 401 Score = 32.3 bits (72), Expect = 2.8 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Frame = +2 Query: 392 GVPVLD-VDSRLVGFSASNMQGPTKSLPRITFEKELNKIVNSKDLKHFKHLIYMAGTDMV 568 GV +D V++RLVG + + ++ IT KEL + K++ HFK +I T+++ Sbjct: 251 GVGRIDHVENRLVGIKSREVYECPAAMTLITAHKELEDLTLVKEVAHFKPMIEQKITELI 310
>P62832:RL23_RAT 60S ribosomal protein L23 - Rattus norvegicus (Rat)| Length = 140 Score = 26.9 bits (58), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = +2 Query: 617 DMWPRIASNANAI 655 D+WPRIASNA +I Sbjct: 127 DLWPRIASNAGSI 139 Score = 23.9 bits (50), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3 Query: 579 DNAGVIVGPRGEM 617 DNAGVIV +GEM Sbjct: 100 DNAGVIVNNKGEM 112
>Q5REU2:RL23_PONPY 60S ribosomal protein L23 - Pongo pygmaeus (Orangutan)| Length = 140 Score = 26.9 bits (58), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = +2 Query: 617 DMWPRIASNANAI 655 D+WPRIASNA +I Sbjct: 127 DLWPRIASNAGSI 139 Score = 23.9 bits (50), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3 Query: 579 DNAGVIVGPRGEM 617 DNAGVIV +GEM Sbjct: 100 DNAGVIVNNKGEM 112
>P62831:RL23_PIG 60S ribosomal protein L23 - Sus scrofa (Pig)| Length = 140 Score = 26.9 bits (58), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = +2 Query: 617 DMWPRIASNANAI 655 D+WPRIASNA +I Sbjct: 127 DLWPRIASNAGSI 139 Score = 23.9 bits (50), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3 Query: 579 DNAGVIVGPRGEM 617 DNAGVIV +GEM Sbjct: 100 DNAGVIVNNKGEM 112
>P62830:RL23_MOUSE 60S ribosomal protein L23 - Mus musculus (Mouse)| Length = 140 Score = 26.9 bits (58), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = +2 Query: 617 DMWPRIASNANAI 655 D+WPRIASNA +I Sbjct: 127 DLWPRIASNAGSI 139 Score = 23.9 bits (50), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3 Query: 579 DNAGVIVGPRGEM 617 DNAGVIV +GEM Sbjct: 100 DNAGVIVNNKGEM 112
>Q90YU5:RL23_ICTPU 60S ribosomal protein L23 - Ictalurus punctatus (Channel catfish)| Length = 140 Score = 26.9 bits (58), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = +2 Query: 617 DMWPRIASNANAI 655 D+WPRIASNA +I Sbjct: 127 DLWPRIASNAGSI 139 Score = 23.9 bits (50), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3 Query: 579 DNAGVIVGPRGEM 617 DNAGVIV +GEM Sbjct: 100 DNAGVIVNNKGEM 112
>P62829:RL23_HUMAN 60S ribosomal protein L23 - Homo sapiens (Human)| Length = 140 Score = 26.9 bits (58), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = +2 Query: 617 DMWPRIASNANAI 655 D+WPRIASNA +I Sbjct: 127 DLWPRIASNAGSI 139 Score = 23.9 bits (50), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3 Query: 579 DNAGVIVGPRGEM 617 DNAGVIV +GEM Sbjct: 100 DNAGVIVNNKGEM 112
>Q6PC14:RL23_DANRE 60S ribosomal protein L23 - Danio rerio (Zebrafish) (Brachydanio| rerio) Length = 140 Score = 26.9 bits (58), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = +2 Query: 617 DMWPRIASNANAI 655 D+WPRIASNA +I Sbjct: 127 DLWPRIASNAGSI 139 Score = 23.9 bits (50), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3 Query: 579 DNAGVIVGPRGEM 617 DNAGVIV +GEM Sbjct: 100 DNAGVIVNNKGEM 112
>Q3T057:RL23_BOVIN 60S ribosomal protein L23 - Bos taurus (Bovine)| Length = 140 Score = 26.9 bits (58), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = +2 Query: 617 DMWPRIASNANAI 655 D+WPRIASNA +I Sbjct: 127 DLWPRIASNAGSI 139 Score = 23.9 bits (50), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3 Query: 579 DNAGVIVGPRGEM 617 DNAGVIV +GEM Sbjct: 100 DNAGVIVNNKGEM 112
>Q9GNE2:RL23_AEDAE 60S ribosomal protein L23 - Aedes aegypti (Yellowfever mosquito)| Length = 140 Score = 26.9 bits (58), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = +2 Query: 617 DMWPRIASNANAI 655 D+WPRIASNA +I Sbjct: 127 DLWPRIASNAGSI 139 Score = 23.9 bits (50), Expect(2) = 3.7 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3 Query: 579 DNAGVIVGPRGEM 617 DNAGVIV +GEM Sbjct: 100 DNAGVIVNNKGEM 112
>Q00322:CEBPD_MOUSE CCAAT/enhancer-binding protein delta - Mus musculus (Mouse)| Length = 268 Score = 31.6 bits (70), Expect = 4.7 Identities = 19/45 (42%), Positives = 23/45 (51%) Frame = +3 Query: 138 QSSPPDSARLPRGESGVEDLHPVLVRSGGQGEQGYDLLSTPHRHR 272 Q +PP S PRG G L P VR G G++G D S +R R Sbjct: 154 QPTPPTSPEPPRGSPG-PSLAPGTVREKGAGKRGPDRGSPEYRQR 197
>Q8CSX1:SYI_STAES Isoleucyl-tRNA synthetase - Staphylococcus epidermidis (strain ATCC| 12228) Length = 916 Score = 31.6 bits (70), Expect = 4.7 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +1 Query: 508 KFQGPQAF*APHLYGWYGHGRRCEITLELSSVPGVR*HVAQDRQQCKCHRLRAL 669 +++ Q F AP++ GW HG E L V + VA+ R++CK L+ + Sbjct: 79 RYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSVAEFREKCKEFALKQI 132
>Q5HPZ9:SYI_STAEQ Isoleucyl-tRNA synthetase - Staphylococcus epidermidis (strain ATCC| 35984 / RP62A) Length = 916 Score = 31.6 bits (70), Expect = 4.7 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +1 Query: 508 KFQGPQAF*APHLYGWYGHGRRCEITLELSSVPGVR*HVAQDRQQCKCHRLRAL 669 +++ Q F AP++ GW HG E L V + VA+ R++CK L+ + Sbjct: 79 RYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSVAEFREKCKEFALKQI 132
>Q846V6:SYI_STAEP Isoleucyl-tRNA synthetase - Staphylococcus epidermidis| Length = 871 Score = 31.6 bits (70), Expect = 4.7 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +1 Query: 508 KFQGPQAF*APHLYGWYGHGRRCEITLELSSVPGVR*HVAQDRQQCKCHRLRAL 669 +++ Q F AP++ GW HG E L V + VA+ R++CK L+ + Sbjct: 79 RYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSVAEFREKCKEFALKQI 132
>Q03484:CEBPD_RAT CCAAT/enhancer-binding protein delta - Rattus norvegicus (Rat)| Length = 268 Score = 30.8 bits (68), Expect = 8.0 Identities = 19/45 (42%), Positives = 23/45 (51%) Frame = +3 Query: 138 QSSPPDSARLPRGESGVEDLHPVLVRSGGQGEQGYDLLSTPHRHR 272 Q +PP S PRG G L P VR G G++G D S +R R Sbjct: 154 QPTPPTSPEPPRGSPG-PSLAPGPVREKGAGKRGPDRGSPEYRQR 197
>Q4L5P4:SYI_STAHJ Isoleucyl-tRNA synthetase - Staphylococcus haemolyticus (strain| JCSC1435) Length = 916 Score = 30.8 bits (68), Expect = 8.1 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = +1 Query: 508 KFQGPQAF*APHLYGWYGHGRRCEITLELSSVPGVR*HVAQDRQQCK 648 +++ Q F AP++ GW HG E L V + +A+ R++CK Sbjct: 79 RYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSIAEFREKCK 125 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 174,438,067 Number of extensions: 4075903 Number of successful extensions: 11239 Number of sequences better than 10.0: 27 Number of HSP's gapped: 11230 Number of HSP's successfully gapped: 41 Length of query: 308 Length of database: 100,686,439 Length adjustment: 113 Effective length of query: 195 Effective length of database: 69,691,104 Effective search space: 13589765280 Effective search space used: 13589765280 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
