ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf27p07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC073492.18| Homo sapiens Xp BAC RP11-460J19 (Roswell Park Ca... 48 0.057
2gb|DQ244616.1| Zea mays clone 9638 mRNA sequence 42 3.5
3gb|AF479048.1| Triticum aestivum ribosomal Pr 117 mRNA, partial cds 42 3.5
4gb|AY846830.1| Triticum aestivum ribosomal protein L17 mRNA, com... 42 3.5
5emb|AL732540.4| Mouse DNA sequence from clone RP23-170L19 on chr... 42 3.5

>gb|AC073492.18| Homo sapiens Xp BAC RP11-460J19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155567
 Score = 48.1 bits (24), Expect = 0.057
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 839    ctttgtgttgctccattttggttt 862
              ||||||||||||||||||||||||
Sbjct: 111319 ctttgtgttgctccattttggttt 111296



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>gb|DQ244616.1| Zea mays clone 9638 mRNA sequence
          Length = 668

 Score = 42.1 bits (21), Expect = 3.5
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 623 tggcccaggatcgccagcaatgcaaatgccatcgtctgagagctt 667
           ||||| |||||||||||    |||||||||||||| |||||||||
Sbjct: 409 tggcctaggatcgccagtgcagcaaatgccatcgtttgagagctt 453



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>gb|AF479048.1| Triticum aestivum ribosomal Pr 117 mRNA, partial cds
          Length = 444

 Score = 42.1 bits (21), Expect = 3.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 621 tgtggcccaggatcgccagcaatgcaaatgccatcgtctga 661
           ||||||||||||| ||||||   || |||||||||||||||
Sbjct: 404 tgtggcccaggattgccagcgccgcgaatgccatcgtctga 444



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>gb|AY846830.1| Triticum aestivum ribosomal protein L17 mRNA, complete cds
          Length = 676

 Score = 42.1 bits (21), Expect = 3.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 621 tgtggcccaggatcgccagcaatgcaaatgccatcgtctga 661
           ||||||||||||| ||||||   || |||||||||||||||
Sbjct: 404 tgtggcccaggattgccagcgccgcgaatgccatcgtctga 444



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>emb|AL732540.4| Mouse DNA sequence from clone RP23-170L19 on chromosome 4, complete
             sequence
          Length = 190289

 Score = 42.1 bits (21), Expect = 3.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 808   tgtcagtgtgtgtgccatgaa 828
             |||||||||||||||||||||
Sbjct: 88565 tgtcagtgtgtgtgccatgaa 88545


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 158,992,324
Number of extensions: 7273275
Number of successful extensions: 139943
Number of sequences better than 10.0: 5
Number of HSP's gapped: 139943
Number of HSP's successfully gapped: 5
Length of query: 925
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 902
Effective length of database: 18,503,978,556
Effective search space: 16690588657512
Effective search space used: 16690588657512
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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