ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf27o13 |
|---|---|
| Clone Library Name | barley_pub |
>O94424:T2FB_SCHPO Transcription initiation factor IIF subunit beta -| Schizosaccharomyces pombe (Fission yeast) Length = 307 Score = 91.7 bits (226), Expect = 5e-18 Identities = 76/263 (28%), Positives = 124/263 (47%), Gaps = 6/263 (2%) Frame = +2 Query: 131 DEAKYLETARADRSVWLMKCPPVVXXXXXXXXXXXXXXNPNPVVAKVVLSLDPLSSAEPS 310 D+A L+ + VWL+K P + N + +L + Sbjct: 18 DDAGDLDLGQIGSRVWLVKIPKFLMDKW------------NSIPEDDAANLGCVRVKNDE 65 Query: 311 LQFKMEMSQTSVASTCNLPKSYSLNMFKDFVPMC-VF--SETNQGKLSCE--GKVEHKFD 475 +Q ++ S + ++PK Y+L + FV VF SET+ S G V H+ + Sbjct: 66 IQLLLQNSPENA----DVPKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHECN 121 Query: 476 MEPHKDNLLNYAKLCRERTQKSMVKTRKVQVLDNDHGMSMRPMPGMVGLISSSSKEK-RK 652 + P ++ +Y ++ ++R + RKVQ++D+ G + P G +G S S+ R Sbjct: 122 VSPVIND--DYRRVMQKRALAASAPKRKVQMIDDRGGSLLAP--GTLGSRSRSTTSFIRN 177 Query: 653 PTPTKPSDVKRTRRDRRELENIIFKLFEKQPNWALKALVQETDQPEQFLKEILNDLCMYN 832 P +K +R R EL +I+FK FE W LK L + QPE +LKE+L+ + + N Sbjct: 178 VKPRTGEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAILN 237 Query: 833 KRGPNQGTHELKPEYKKSSEDAA 901 KRGP + LKPEYK + + A+ Sbjct: 238 KRGPYALKYSLKPEYKGTMDAAS 260
>P41900:T2FB_DROME Transcription initiation factor IIF subunit beta - Drosophila| melanogaster (Fruit fly) Length = 277 Score = 81.3 bits (199), Expect = 7e-15 Identities = 75/275 (27%), Positives = 122/275 (44%), Gaps = 19/275 (6%) Frame = +2 Query: 140 KYLETARADRSVWLMKCPPVVXXXXXXXXXXXXXX----NPNP-VVAKVVLSLDPLSSAE 304 K L+ + A R VWL+K P + N P A+V LSL P A Sbjct: 14 KDLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTP---AV 70 Query: 305 PSLQFKMEMSQTSVASTCNLPKSYSLNMFKDFVPM-------CVFSETNQGKLSCEGKVE 463 +L + ++ + + K +L +F P ++ + KL EG++ Sbjct: 71 LALDPEEKIPTEHILDVSQVTKQ-TLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRIV 129 Query: 464 HKFDMEPHKDNLLNYAKLCRERTQKSMVKTRKVQVLDNDHGMSMRPMPGMVGLISSSSKE 643 K + P DN Y KL E +K+ R+VQ +D + +P+ I ++ Sbjct: 130 QKLECRPIADNC--YMKLKLESIRKASEPQRRVQPIDKIV-QNFKPVKDHAHNIEYRERK 186 Query: 644 KRKPTPTKPSDVKRTRRDRRELENIIFKLFEKQPNWALKALVQETDQPEQFLKEILNDLC 823 K ++ K+ R D+ + +++F FEK + +K LV+ T+QP +LKEIL D+C Sbjct: 187 K--------AEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVC 238 Query: 824 MYNKRGPNQGTHELKPEY-------KKSSEDAAGA 907 YN + P++ ELK EY KK E +G+ Sbjct: 239 DYNMKNPHKNMWELKKEYRHYKTEEKKEEEHKSGS 273
>Q8R0A0:T2FB_MOUSE Transcription initiation factor IIF subunit beta - Mus musculus| (Mouse) Length = 249 Score = 80.5 bits (197), Expect = 1e-14 Identities = 54/158 (34%), Positives = 82/158 (51%) Frame = +2 Query: 407 MCVFSETNQGKLSCEGKVEHKFDMEPHKDNLLNYAKLCRERTQKSMVKTRKVQVLDNDHG 586 + VF+E++ KLS EG V + + P NY KL R + ++S R Q LD Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRPAASE--NYMKLKRLQIEESSKPVRLSQQLDKVVT 150 Query: 587 MSMRPMPGMVGLISSSSKEKRKPTPTKPSDVKRTRRDRRELENIIFKLFEKQPNWALKAL 766 + +P+ I K+K D KR R D++ + +++F FEK + LK L Sbjct: 151 TNYKPVANHQYNIEYERKKKE--------DGKRARADKQHVLDMLFSAFEKHQYYNLKDL 202 Query: 767 VQETDQPEQFLKEILNDLCMYNKRGPNQGTHELKPEYK 880 V T QP +LKEIL ++ + N +G ++ T ELKPEY+ Sbjct: 203 VDITKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYR 240
>Q03123:T2FB_XENLA Transcription initiation factor IIF subunit beta - Xenopus laevis| (African clawed frog) Length = 264 Score = 80.1 bits (196), Expect = 2e-14 Identities = 49/148 (33%), Positives = 80/148 (54%) Frame = +2 Query: 437 KLSCEGKVEHKFDMEPHKDNLLNYAKLCRERTQKSMVKTRKVQVLDNDHGMSMRPMPGMV 616 KL+ EG V H+ + P + NY ++ R++ ++S R+ Q L+ + +P+ Sbjct: 118 KLALEGIVVHRAECRPAASD--NYMQMKRKQIEESSKPKRQSQQLEKAVTSNYKPVSNHQ 175 Query: 617 GLISSSSKEKRKPTPTKPSDVKRTRRDRRELENIIFKLFEKQPNWALKALVQETDQPEQF 796 I K+K D KR R D+ ++ +++F FEK + +K LV T QP + Sbjct: 176 YNIEYEKKKK--------DDGKRARVDKHQVLDMLFSAFEKHQYYNIKDLVDITKQPVTY 227 Query: 797 LKEILNDLCMYNKRGPNQGTHELKPEYK 880 LKEIL D+ +YN +G ++ T ELKPEY+ Sbjct: 228 LKEILRDIGIYNMKGTHKNTWELKPEYR 255
>P13984:T2FB_HUMAN Transcription initiation factor IIF subunit beta - Homo sapiens| (Human) Length = 249 Score = 79.3 bits (194), Expect = 3e-14 Identities = 53/158 (33%), Positives = 82/158 (51%) Frame = +2 Query: 407 MCVFSETNQGKLSCEGKVEHKFDMEPHKDNLLNYAKLCRERTQKSMVKTRKVQVLDNDHG 586 + VF+E++ KLS EG V + + P NY +L R + ++S R Q LD Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRPAASE--NYMRLKRLQIEESSKPVRLSQQLDKVVT 150 Query: 587 MSMRPMPGMVGLISSSSKEKRKPTPTKPSDVKRTRRDRRELENIIFKLFEKQPNWALKAL 766 + +P+ I K+K D KR R D++ + +++F FEK + LK L Sbjct: 151 TNYKPVANHQYNIEYERKKKE--------DGKRARADKQHVLDMLFSAFEKHQYYNLKDL 202 Query: 767 VQETDQPEQFLKEILNDLCMYNKRGPNQGTHELKPEYK 880 V T QP +LKEIL ++ + N +G ++ T ELKPEY+ Sbjct: 203 VDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYR 240
>Q2T9L9:T2FB_BOVIN Transcription initiation factor IIF subunit beta - Bos taurus| (Bovine) Length = 249 Score = 79.3 bits (194), Expect = 3e-14 Identities = 52/158 (32%), Positives = 83/158 (52%) Frame = +2 Query: 407 MCVFSETNQGKLSCEGKVEHKFDMEPHKDNLLNYAKLCRERTQKSMVKTRKVQVLDNDHG 586 + VF+E++ KLS EG V + + P + NY +L R + ++S R Q LD Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRPAANE--NYMRLKRLQIEESSKPVRLSQQLDKVVT 150 Query: 587 MSMRPMPGMVGLISSSSKEKRKPTPTKPSDVKRTRRDRRELENIIFKLFEKQPNWALKAL 766 + +P+ I K+K D KR R D++ + +++F FEK + LK L Sbjct: 151 TNYKPVANHQYNIEYERKKKE--------DGKRARADKQHVLDMLFSAFEKHQYYNLKDL 202 Query: 767 VQETDQPEQFLKEILNDLCMYNKRGPNQGTHELKPEYK 880 V T QP +LK+IL ++ + N +G ++ T ELKPEY+ Sbjct: 203 VDITKQPVSYLKDILKEIGVQNVKGIHKNTWELKPEYR 240
>Q01750:T2FB_RAT Transcription initiation factor IIF subunit beta - Rattus| norvegicus (Rat) Length = 249 Score = 78.6 bits (192), Expect = 5e-14 Identities = 53/158 (33%), Positives = 81/158 (51%) Frame = +2 Query: 407 MCVFSETNQGKLSCEGKVEHKFDMEPHKDNLLNYAKLCRERTQKSMVKTRKVQVLDNDHG 586 + VF+E++ KLS EG V + + P NY KL R + ++S R Q D Sbjct: 93 LTVFTESSSDKLSLEGIVVQRAECRPAASE--NYMKLKRLQIEESSKPVRLSQQADKVVT 150 Query: 587 MSMRPMPGMVGLISSSSKEKRKPTPTKPSDVKRTRRDRRELENIIFKLFEKQPNWALKAL 766 + +P+ I K+K D KR R D++ + +++F FEK + LK L Sbjct: 151 TNYKPVANHQYNIEYERKKKE--------DGKRARADKQHVLDMLFSAFEKHQYYNLKDL 202 Query: 767 VQETDQPEQFLKEILNDLCMYNKRGPNQGTHELKPEYK 880 V T QP +LKEIL ++ + N +G ++ T ELKPEY+ Sbjct: 203 VDITKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYR 240
>P41896:T2FB_YEAST Transcription initiation factor IIF subunit beta - Saccharomyces| cerevisiae (Baker's yeast) Length = 400 Score = 70.5 bits (171), Expect = 1e-11 Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 3/163 (1%) Frame = +2 Query: 416 FSETNQGKLSCEGKVEHKFDMEPHKDNLLNYAKLCRERTQKSMVKTR---KVQVLDNDHG 586 + +T K + G V H+ + P ++ NY K+ +R +++VK ++ LD G Sbjct: 204 YVKTIPKKTAIVGTVCHECQVMPSMNDP-NYHKIVEQR--RNIVKLNNKERITTLDETVG 260 Query: 587 MSMRPMPGMVGLISSSSKEKRKPTPTKPSDVKRTRRDRRELENIIFKLFEKQPNWALKAL 766 ++M GM + S +S + S++K R ++E+ + +FKLF++ W+LK L Sbjct: 261 VTMSHT-GM-SMRSDNSNFLKVGREKAKSNIKSIRMPKKEILDYLFKLFDEYDYWSLKGL 318 Query: 767 VQETDQPEQFLKEILNDLCMYNKRGPNQGTHELKPEYKKSSED 895 + T QPE LKE L+ + K+GP + L+PEYKK E+ Sbjct: 319 KERTRQPEAHLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEE 361
>Q09813:T111_SCHPO Putative transcription initiation factor TFIID 111 kDa subunit -| Schizosaccharomyces pombe (Fission yeast) Length = 979 Score = 33.1 bits (74), Expect = 2.2 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Frame = +2 Query: 668 PSDVKRTRRDRRELENIIFKLFEKQPNWAL---KALVQETDQPEQFLKEILNDLCMYNKR 838 P K T + L+ ++F+L + PN L + +DQ E +++ L + Y K+ Sbjct: 589 PHSRKVTTASKNRLKMLVFRLIRRSPNGGLFIRQLSKHFSDQNEMQIRQRLKEFMEYKKK 648 Query: 839 GPNQGTHELK 868 G G +LK Sbjct: 649 GDGPGYWKLK 658
>Q8C419:GP158_MOUSE Probable G-protein coupled receptor 158 precursor - Mus musculus| (Mouse) Length = 1200 Score = 33.1 bits (74), Expect = 2.2 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +2 Query: 35 APLAPPGRPSAATKRTPKSRDHPRRLAGAEMGD 133 A L PPGRP + +RTP+ + H ++L A D Sbjct: 24 ASLDPPGRPDSPRERTPRGKQHGQQLPRASAPD 56
>P36225:MAP4_BOVIN Microtubule-associated protein 4 - Bos taurus (Bovine)| Length = 1072 Score = 32.7 bits (73), Expect = 2.9 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Frame = +2 Query: 11 PSSAASDHAPLAPPGRPSAATKR---TPKSRDHPRRLAGAEMGDE 136 P S AS P APP RP+AAT R P P+ +A A++ ++ Sbjct: 687 PMSLASGSVPAAPPKRPAAATSRPSTLPSKDTKPKPVAEAKIPEK 731
>P20480:NCD_DROME Protein claret segregational - Drosophila melanogaster (Fruit fly)| Length = 700 Score = 32.3 bits (72), Expect = 3.7 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%) Frame = +2 Query: 485 HKDNLLNYAKLCR--------ERTQKSMVKTRKVQVLDNDHGMSMRPMPGMVGLISSSSK 640 H +L++ AK+ R ER+ +S T K++++ H G + L+ + Sbjct: 527 HLRHLMHTAKMNRATASTAGNERSSRSHAVT-KLELIGR-HAEKQEISVGSINLVDLAGS 584 Query: 641 EKRKPTPTKPSDVKRTRRDRRELENIIFKLFEKQ 742 E K T T+ ++ K R EL N+I L +KQ Sbjct: 585 ESPK-TSTRMTETKNINRSLSELTNVILALLQKQ 617
>Q9H9J4:UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 - Homo sapiens (Human)| Length = 1325 Score = 32.0 bits (71), Expect = 4.9 Identities = 14/31 (45%), Positives = 21/31 (67%) Frame = +2 Query: 575 NDHGMSMRPMPGMVGLISSSSKEKRKPTPTK 667 ++H +S+ P+PG V SSS +K KP+P K Sbjct: 48 SNHTLSLGPVPGAVVYSSSSVPDKSKPSPQK 78
>Q63HK3:ZKSC2_HUMAN Zinc finger protein with KRAB and SCAN domains 2 - Homo sapiens| (Human) Length = 967 Score = 31.6 bits (70), Expect = 6.4 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Frame = +2 Query: 704 ELENIIFKLFEKQPNWALKALVQETDQPEQFLKEILNDLCMYNKRGPNQGTHE------- 862 E+E + EK P WA + +++ +D E F ++ C + GP++ + Sbjct: 14 EVEGCLIMKVEKDPEWASEPILEGSDSSETF-RKCFRQFCYEDVTGPHEAFSKLWELCCR 72 Query: 863 -LKPEYKKSSE 892 LKPE + + Sbjct: 73 WLKPEMRSKEQ 83
>P79051:RHP16_SCHPO DNA repair protein rhp16 - Schizosaccharomyces pombe (Fission| yeast) Length = 861 Score = 31.6 bits (70), Expect = 6.4 Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 1/180 (0%) Frame = +2 Query: 275 LSLDPLSSAEPSLQFKMEMSQTSVASTCNLPKSYSLNMFKDFVPMCVFSETNQGKLSCEG 454 LS+ S+ S +E + + S+ S N+ K FVP+ E+N+ + + Sbjct: 82 LSISDTSTHTGSSTDNVEANPNTGFSSARKRSLRSSNLKKKFVPLSSPEESNESEFIDDD 141 Query: 455 KVEHKFDMEPHKDNLLNYAKL-CRERTQKSMVKTRKVQVLDNDHGMSMRPMPGMVGLISS 631 + + + K++ +K+ E S ++ + + + R SS Sbjct: 142 ESDEVASIIDIKEDETFDSKVEIPEAAPSSSTESDEESIPLSYQSKRRRVSARASSSASS 201 Query: 632 SSKEKRKPTPTKPSDVKRTRRDRRELENIIFKLFEKQPNWALKALVQETDQPEQFLKEIL 811 SS+ + K P+ R R ELE++ KL E+ P V++ +QP++ + +L Sbjct: 202 SSRTQAKSIPSHERTHYRLIRQHPELEHVWEKLEEEAPR-----EVKQIEQPKELVLNLL 256
>Q8RDN5:NANE_FUSNN Putative N-acetylmannosamine-6-phosphate 2-epimerase -| Fusobacterium nucleatum subsp. nucleatum Length = 224 Score = 31.2 bits (69), Expect = 8.3 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 680 KRTRRDRRELENIIFKLFEKQPNWALKALVQETDQ 784 KR R DR++L+N I ++ EK PN A + D+ Sbjct: 103 KRERPDRKDLKNFIAEIKEKYPNQLFMADISSVDE 137 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 180,667,188 Number of extensions: 3921306 Number of successful extensions: 12208 Number of sequences better than 10.0: 16 Number of HSP's gapped: 12189 Number of HSP's successfully gapped: 16 Length of query: 380 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 265 Effective length of database: 69,142,514 Effective search space: 18322766210 Effective search space used: 18322766210 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
