ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf25b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 80 2e-11
2gb|AC022352.5|AC022352 Genomic Sequence for Oryza sativa, Nippon... 80 2e-11
3emb|CT832691.1| Oryza sativa (indica cultivar-group) cDNA clone:... 72 5e-09
4ref|NM_001070864.1| Oryza sativa (japonica cultivar-group) Os10g... 72 5e-09
5dbj|AK069438.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 1e-06
6emb|BX537276.5| Zebrafish DNA sequence from clone DKEYP-57A10 in... 44 1.2
7gb|AC151759.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 42 4.8
8gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 42 4.8
9gb|AC017063.8| Homo sapiens BAC clone RP11-354H17 from 4, comple... 42 4.8
10emb|AL136000.4|CNS01DVQ Human chromosome 14 DNA sequence BAC R-8... 42 4.8 
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10
          Length = 22685906
 Score = 79.8 bits (40), Expect = 2e-11
 Identities = 82/96 (85%)
 Strand = Plus / Plus

                                                                           
Query: 627     tctgcaggttgatccccgcatgctgaaggctgtcgcgatagagcaccataaagatgccga 686
               ||||||||||||||| ||||| ||||||||||| || || |||||||| || ||||  ||
Sbjct: 7718100 tctgcaggttgatcctcgcatactgaaggctgttgccattgagcaccacaatgatgttga 7718159

                                                   
Query: 687     ttctgctgtggttgccgtccttgacgaagtcatgcc 722
               ||||||||| || ||  ||||||| |||||||||||
Sbjct: 7718160 ttctgctgtagtcgcaatccttgatgaagtcatgcc 7718195



 Score = 50.1 bits (25), Expect = 0.020
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                           
Query: 184     ctagggttcggagatgggcgaccacatgaccgtcttccgctcacttcgcgagctcttccc 243
               ||||||||| ||||||||||| || | | ||||||||  ||| ||||  ||||| |||||
Sbjct: 7717735 ctagggttccgagatgggcgatcataaggccgtcttcatctcccttcaggagctattccc 7717794

                        
Query: 244     tcaggtacg 252
               |||||||||
Sbjct: 7717795 tcaggtacg 7717803
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>gb|AC022352.5|AC022352 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0034E23, from chromosome 10, complete sequence
          Length = 139398

 Score = 79.8 bits (40), Expect = 2e-11
 Identities = 82/96 (85%)
 Strand = Plus / Plus

                                                                         
Query: 627   tctgcaggttgatccccgcatgctgaaggctgtcgcgatagagcaccataaagatgccga 686
             ||||||||||||||| ||||| ||||||||||| || || |||||||| || ||||  ||
Sbjct: 23979 tctgcaggttgatcctcgcatactgaaggctgttgccattgagcaccacaatgatgttga 24038

                                                 
Query: 687   ttctgctgtggttgccgtccttgacgaagtcatgcc 722
             ||||||||| || ||  ||||||| |||||||||||
Sbjct: 24039 ttctgctgtagtcgcaatccttgatgaagtcatgcc 24074



 Score = 50.1 bits (25), Expect = 0.020
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                         
Query: 184   ctagggttcggagatgggcgaccacatgaccgtcttccgctcacttcgcgagctcttccc 243
             ||||||||| ||||||||||| || | | ||||||||  ||| ||||  ||||| |||||
Sbjct: 23614 ctagggttccgagatgggcgatcataaggccgtcttcatctcccttcaggagctattccc 23673

                      
Query: 244   tcaggtacg 252
             |||||||||
Sbjct: 23674 tcaggtacg 23682
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>emb|CT832691.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA212H18, full
           insert sequence
          Length = 2215

 Score = 71.9 bits (36), Expect = 5e-09
 Identities = 78/92 (84%)
 Strand = Plus / Plus

                                                                       
Query: 631 caggttgatccccgcatgctgaaggctgtcgcgatagagcaccataaagatgccgattct 690
           ||||||||||| ||||| ||||||||||| || || |||||||| || ||||  ||||||
Sbjct: 348 caggttgatcctcgcatactgaaggctgttgccattgagcaccacaatgatgttgattct 407

                                           
Query: 691 gctgtggttgccgtccttgacgaagtcatgcc 722
           ||||| || ||  ||||||| |||||||||||
Sbjct: 408 gctgtagtcgcaatccttgatgaagtcatgcc 439



 Score = 44.1 bits (22), Expect = 1.2
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                       
Query: 184 ctagggttcggagatgggcgaccacatgaccgtcttccgctcacttcgcgagctcttccc 243
           ||||||||| ||||||||||| || | | ||||||||  ||| ||||  ||||| |||||
Sbjct: 287 ctagggttccgagatgggcgatcataaggccgtcttcatctcccttcaggagctattccc 346

                 
Query: 244 tcaggt 249
           ||||||
Sbjct: 347 tcaggt 352
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>ref|NM_001070864.1| Oryza sativa (japonica cultivar-group) Os10g0315400 (Os10g0315400)
           mRNA, complete cds
          Length = 2373

 Score = 71.9 bits (36), Expect = 5e-09
 Identities = 78/92 (84%)
 Strand = Plus / Plus

                                                                       
Query: 631 caggttgatccccgcatgctgaaggctgtcgcgatagagcaccataaagatgccgattct 690
           ||||||||||| ||||| ||||||||||| || || |||||||| || ||||  ||||||
Sbjct: 330 caggttgatcctcgcatactgaaggctgttgccattgagcaccacaatgatgttgattct 389

                                           
Query: 691 gctgtggttgccgtccttgacgaagtcatgcc 722
           ||||| || ||  ||||||| |||||||||||
Sbjct: 390 gctgtagtcgcaatccttgatgaagtcatgcc 421



 Score = 44.1 bits (22), Expect = 1.2
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                       
Query: 184 ctagggttcggagatgggcgaccacatgaccgtcttccgctcacttcgcgagctcttccc 243
           ||||||||| ||||||||||| || | | ||||||||  ||| ||||  ||||| |||||
Sbjct: 269 ctagggttccgagatgggcgatcataaggccgtcttcatctcccttcaggagctattccc 328

                 
Query: 244 tcaggt 249
           ||||||
Sbjct: 329 tcaggt 334
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>dbj|AK069438.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022N13, full
           insert sequence
          Length = 3590

 Score = 63.9 bits (32), Expect = 1e-06
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 631 caggttgatccccgcatgctgaaggctgtcgcgatagagcaccataaagatgccgattct 690
           ||||||||||| ||||| ||||||||||| || || |||||||| ||  |||  ||||||
Sbjct: 331 caggttgatcctcgcatactgaaggctgttgccattgagcaccacaacaatgttgattct 390

                                           
Query: 691 gctgtggttgccgtccttgacgaagtcatgcc 722
           ||||| || ||  ||||||| |||||||||||
Sbjct: 391 gctgtagtcgcaatccttgatgaagtcatgcc 422



 Score = 44.1 bits (22), Expect = 1.2
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                       
Query: 184 ctagggttcggagatgggcgaccacatgaccgtcttccgctcacttcgcgagctcttccc 243
           ||||||||| ||||||||||| || | | ||||||||  ||| ||||  ||||| |||||
Sbjct: 270 ctagggttccgagatgggcgatcataaggccgtcttcatctcccttcaggagctattccc 329

                 
Query: 244 tcaggt 249
           ||||||
Sbjct: 330 tcaggt 335
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>emb|BX537276.5| Zebrafish DNA sequence from clone DKEYP-57A10 in linkage group 3,
             complete sequence
          Length = 165427

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1190  tgactgttttgtaatttaactt 1211
             ||||||||||||||||||||||
Sbjct: 76405 tgactgttttgtaatttaactt 76426
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>gb|AC151759.1| Ornithorhynchus anatinus chromosome UNK clone OABb-454P24, complete
             sequence
          Length = 147999

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 375   aggaggagacttgttacagat 395
             |||||||||||||||||||||
Sbjct: 49523 aggaggagacttgttacagat 49503
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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 187     gggttcggagatgggcgacca 207
               |||||||||||||||||||||
Sbjct: 2584739 gggttcggagatgggcgacca 2584759
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>gb|AC017063.8| Homo sapiens BAC clone RP11-354H17 from 4, complete sequence
          Length = 193092

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1036   atatgtgagatctaatcaaaa 1056
              |||||||||||||||||||||
Sbjct: 189156 atatgtgagatctaatcaaaa 189176
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>emb|AL136000.4|CNS01DVQ Human chromosome 14 DNA sequence BAC R-860P2 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 201587

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 293   gctcggaggggaaacgtgggg 313
             |||||||||||||||||||||
Sbjct: 18513 gctcggaggggaaacgtgggg 18493


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 201,631,132
Number of extensions: 10239274
Number of successful extensions: 184041
Number of sequences better than 10.0: 10
Number of HSP's gapped: 184041
Number of HSP's successfully gapped: 15
Length of query: 1257
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1234
Effective length of database: 18,503,978,556
Effective search space: 22833909538104
Effective search space used: 22833909538104
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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