>P14381:YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein - Xenopus laevis|
            (African clawed frog)
          Length = 1308
 Score = 68.9 bits (167), Expect(2) = 1e-17
 Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
 Frame = +3

Query: 2043 N*GPSSDGFPAHFY*RHWSLCGEEITRVVLRTVRGEQSAKIINDTVLVLIPKVMNPTLIS 2222
            N  P  DG    F+   W   G +  RV+    +  +        VL L+PK  +  LI 
Sbjct: 464  NKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIK 523

Query: 2223 QFRPVSLRNVLYKIASKVVGNRLKHVIPDIISE*QSAFVPRRLITDNI-ICGECLHFTKR 2399
             +RPVSL +  YKI +K +  RLK V+ ++I   QS  VP R I DN+ +  + LHF +R
Sbjct: 524  NWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFARR 583

Query: 2400 SKAKTKGLCALKLDMIK 2450
            +      L  L LD  K
Sbjct: 584  TGL---SLAFLSLDQEK 597



 Score = 43.9 bits (102), Expect(2) = 1e-17
 Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
 Frame = +1

Query: 1726 RSRIEWISTGDKNTKFFHLRASIRRKKNMVKALANSLGTITDDPRDIKEMVNDFYQNLYT 1905
            RSR++ +   D+ ++FF+     +  +  +  L    GT  +DP  I++    FYQNL++
Sbjct: 359  RSRMQLLCDMDRGSRFFYALEKKKGNRKQITCLFAEDGTPLEDPEAIRDRARSFYQNLFS 418

Query: 1906 FEGVS--GVDDVLVHVPETEKVTTTMNDILCTPYTSKEVKTALFQMFPTKAP 2055
             + +S    +++   +P    V+    + L TP T  E+  AL  M   K+P
Sbjct: 419  PDPISPDACEELWDGLP---VVSERRKERLETPITLDELSQALRLMPHNKSP 467

>P08548:LIN1_NYCCO LINE-1 reverse transcriptase homolog - Nycticebus coucang (Slow|
            loris)
          Length = 1260

 Score = 50.1 bits (118), Expect(2) = 4e-12
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
 Frame = +3

Query: 2052 PSSDGFPAHFY*RHWSLCGEEITRVVLRTVRGEQSAKIINDTV----LVLIPKV-MNPTL 2216
            P  DGF + FY        EE+  ++L   +  +   I+ +T     + LIPK   +PT 
Sbjct: 470  PGPDGFTSEFY----QTFKEELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTR 525

Query: 2217 ISQFRPVSLRNVLYKIASKVVGNRLKHVIPDIISE*QSAFVP 2342
               +RP+SL N+  KI +K++ NR++  I  II   Q  F+P
Sbjct: 526  KENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIP 567



 Score = 43.9 bits (102), Expect(2) = 4e-12
 Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
 Frame = +1

Query: 1795 RRKKNMVKALANSLGTITDDPRDIKEMVNDFYQNLYT--FEGVSGVDDVL--VHVPETEK 1962
            +R K+++ ++ N    IT DP +I++++N++Y+ LY+  +E +  +D  L   H+P   +
Sbjct: 383  KRVKSLISSIRNGNDEITTDPSEIQKILNEYYKKLYSHKYENLKEIDQYLEACHLPRLSQ 442

Query: 1963 VTTTMNDILCTPYTSKEVKTALFQMFPTKAP 2055
                M   L  P +S E+ + +  +   K+P
Sbjct: 443  KEVEM---LNRPISSSEIASTIQNLPKKKSP 470

>P11369:POL2_MOUSE Retrovirus-related Pol polyprotein LINE-1 - Mus musculus (Mouse)|
          Length = 1281

 Score = 49.3 bits (116), Expect(2) = 3e-11
 Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
 Frame = +3

Query: 2025 SLPNVPN*GPSSDGFPAHFY*RHWSLCGEEITRVVLRTVRG-EQSAKIIN---DTVLVLI 2192
            SLP   + GP  DGF A FY        E++  ++ +     E    + N   +  + LI
Sbjct: 471  SLPTKKSPGP--DGFSAEFY----QTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLI 524

Query: 2193 PKVM-NPTLISQFRPVSLRNVLYKIASKVVGNRLKHVIPDIISE*QSAFVP 2342
            PK   +PT I  FRP+SL N+  KI +K++ NR++  I  II   Q  F+P
Sbjct: 525  PKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIP 575



 Score = 41.6 bits (96), Expect(2) = 3e-11
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = +1

Query: 1798 RKKNMVKALANSLGTITDDPRDIKEMVNDFYQNLYT--FEGVSGVDDVLVHVPETEKVTT 1971
            R K ++  + N  G IT DP +I+  +  FY+ LY+   E +  +D  L    +  K+  
Sbjct: 392  RDKILINKIRNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRY-QVPKLNQ 450

Query: 1972 TMNDILCTPYTSKEVKTALFQMFPTK 2049
               D L +P + KE++ A+    PTK
Sbjct: 451  DQVDHLNSPISPKEIE-AVINSLPTK 475

>P08547:LIN1_HUMAN LINE-1 reverse transcriptase homolog - Homo sapiens (Human)|
          Length = 1259

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
 Frame = +3

Query: 2025 SLPNVPN*GPSSDGFPAHFY*RHWSLCGEEITRVVLRTVRGEQSAKIINDTV----LVLI 2192
            SLPN  + GP  +GF A FY R+     EE+   +L+  +  +   I+ ++     ++LI
Sbjct: 463  SLPNKKSPGP--EGFTAEFYQRY----KEELVPFLLKLFQSIEKEGILPNSFYEASIILI 516

Query: 2193 PKVMNPTLISQ-FRPVSLRNVLYKIASKVVGNRLKHVIPDIISE*QSAFVP 2342
            PK    T   + FRP+SL N+  KI +K++ N+++  I  +I   Q  F+P
Sbjct: 517  PKPGRDTTKKENFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQVGFIP 567



 Score = 42.4 bits (98), Expect = 0.011
 Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
 Frame = +1

Query: 1642 SSQVSRTE--IKINENLVEMYHMEELMWRQRSRIEWISTGDKNTKFFHLRASIRRKKNMV 1815
            +S+ SR +  IKI   L E+   + L     SR  +    +K  +        +R+KN +
Sbjct: 330  NSKASRRQEIIKIRAELKEIETQKTLQKINESRSWFFEKINKIDRPLARLIKKKREKNQI 389

Query: 1816 KALANSLGTITDDPRDIKEMVNDFYQNLYT--FEGVSGVDDVLVHVPETEKVTTTMNDIL 1989
              + N  G IT DP +I+  + ++Y++LY    E +  +D  L       ++     + L
Sbjct: 390  DTIKNDRGDITTDPTEIQTTIREYYKHLYANKLENLEEMDKFL-DTYTLPRLNQEEVESL 448

Query: 1990 CTPYTSKEVKTALFQMFPTKAP 2055
              P TS E++  +  +   K+P
Sbjct: 449  NRPITSSEIEAIINSLPNKKSP 470

>Q7MA56:RPOBC_WOLSU Bifunctional DNA-directed RNA polymerase, beta and beta' chain -|
            Wolinella succinogenes
          Length = 2883

 Score = 34.7 bits (78), Expect = 2.3
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
 Frame = -1

Query: 2513 SQGGPTWKVTKRESLTLG----ALHLDHIKLE----STQAFCLCFGPL-RKMQTLSTYDV 2361
            ++GG   KV  +    LG      ++DH  L+    + Q  C    P+  + +T+    V
Sbjct: 735  TRGGIVEKVDAKNIYILGEDENGAYIDHYSLQKNLRTNQNTCFSQAPIVHEGETIEAGQV 794

Query: 2360 VGDKPSRDKGRLLLRNNIR 2304
            + D P+ DKG L L  NIR
Sbjct: 795  IADGPNMDKGELALGKNIR 813

>Q2FSF9:DP2L_METHJ DNA polymerase II large subunit - Methanospirillum hungatei (strain|
            JF-1 / DSM 864)
          Length = 1286

 Score = 33.9 bits (76), Expect = 3.9
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 1300 EYIQSTHWLVPG-YCLGQISFREEHDVVNPRT*ESRIQPCEMGIY--PSHLFLWE 1455
            E++++ H LVP  YC  +  +R E     P   +  I  CE G+Y  P +L+LW+
Sbjct: 414  EFMENNHVLVPSAYC--ESWWRLEGGTTRPADEDEAILQCESGLYLHPDYLYLWD 466


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 541,608,709
Number of extensions: 12684160
Number of successful extensions: 28425
Number of sequences better than 10.0: 6
Number of HSP's gapped: 28395
Number of HSP's successfully gapped: 10
Length of query: 954
Length of database: 100,686,439
Length adjustment: 123
Effective length of query: 831
Effective length of database: 66,948,154
Effective search space: 55633915974
Effective search space used: 55633915974
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)