ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf30p09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic prote... 351 9e-93
2gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete se... 135 1e-27
3gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 92 1e-14
4gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 78 2e-10
5gb|AY204215.1| Hordeum vulgare subsp. spontaneum clone Ghs-L-4 T... 70 5e-08
6gb|DQ128056.1| Triticum aestivum clone p3-5, genomic sequence 58 2e-04
7gb|DQ128055.1| Triticum aestivum clone p3-3, genomic sequence 58 2e-04
8gb|DQ128054.1| Triticum aestivum clone p3-2, genomic sequence 58 2e-04
9gb|DQ145754.1| Triticum aestivum clone A3-3, genomic sequence 58 2e-04
10gb|DQ128047.1| Triticum aestivum clone P8-1 Ty3/gypsy-like retro... 58 2e-04
11gb|DQ128046.1| Triticum aestivum clone P4-6 Ty3/gypsy-like retro... 58 2e-04
12gb|DQ128042.1| Triticum aestivum clone A6-6 Ty3/gypsy-like retro... 58 2e-04
13gb|DQ128041.1| Triticum aestivum clone A4-5 Ty3/gypsy-like retro... 58 2e-04
14gb|DQ128040.1| Triticum aestivum clone A4-4 Ty3/gypsy-like retro... 58 2e-04
15gb|DQ128038.1| Triticum aestivum clone A4-1 Ty3/gypsy-like retro... 58 2e-04
16gb|DQ128035.1| Triticum aestivum clone A3-4 Ty3/gypsy-like retro... 58 2e-04
17gb|DQ128034.1| Triticum aestivum clone A3-3 Ty3/gypsy-like retro... 58 2e-04
18gb|DQ128033.1| Triticum aestivum clone A2-6 Ty3/gypsy-like retro... 58 2e-04
19gb|DQ128043.1| Triticum aestivum clone A8-1 Ty3/gypsy-like retro... 56 7e-04
20gb|DQ128029.1| Triticum turgidum clone Td3-2, genomic sequence 52 0.011
21gb|DQ128044.1| Triticum aestivum clone A8-5 Ty3/gypsy-like retro... 50 0.045
22gb|DQ128039.1| Triticum aestivum clone A4-3 Ty3/gypsy-like retro... 50 0.045
23gb|DQ128037.1| Triticum aestivum clone A3-6 Ty3/gypsy-like retro... 50 0.045
24gb|AY919050.1| Lolium perenne clone LpSSR026 SSR marker sequence 50 0.045
25gb|U58023.1|PSU58023 Pseudoroegneria stipifolia RAPD fragment fr... 50 0.045
26dbj|AP004506.1| Lotus japonicus genomic DNA, chromosome 1, clone... 50 0.045
27emb|AL929524.16| Mouse DNA sequence from clone RP23-440D4 on chr... 48 0.18
28gb|AC182012.3| Otolemur garnettii clone CH256-376P14, complete s... 46 0.70
29gb|AC165236.5| Mus musculus chromosome 5, clone RP23-348C18, com... 46 0.70
30gb|AC165335.3| Mus musculus BAC clone RP24-481H19 from chromosom... 46 0.70
31gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome... 46 0.70
32gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome... 46 0.70
33gb|AC123859.4| Mus musculus BAC clone RP23-346B13 from chromosom... 46 0.70
34gb|AC127282.3| Mus musculus BAC clone RP23-318O24 from chromosom... 46 0.70
35gb|DQ249273.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC... 46 0.70
36gb|AC159291.3| Mus musculus BAC clone RP23-287P9 from chromosome... 46 0.70
37gb|AC158361.3| Mus musculus BAC clone RP23-227A12 from chromosom... 46 0.70
38dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.70
39gb|AC156019.2| Mus musculus BAC clone RP23-348E17 from 5, comple... 46 0.70
40gb|AC168268.2| Mus musculus BAC clone RP23-339K12 from chromosom... 44 2.8
41gb|AC123659.11| Mus musculus chromosome 17, clone RP23-192P18, c... 44 2.8
42gb|AC123740.12| Mus musculus chromosome 17, clone RP24-94I20, co... 44 2.8
43gb|DQ128063.1| Triticum monococcum clone tm3-1, genomic sequence 44 2.8
44gb|DQ128062.1| Triticum monococcum clone p8-3, genomic sequence 44 2.8
45gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete seq... 44 2.8
46gb|DQ128045.1| Triticum aestivum clone P4-4 Ty3/gypsy-like retro... 44 2.8
47gb|AC134447.2| Mus musculus BAC clone RP24-186D1 from chromosome... 44 2.8
48gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbare str... 44 2.8
49gb|AC113339.1| Genomic sequence for Oryza sativa (japonica culti... 44 2.8
50dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 2.8
51dbj|AP007300.1| Lotus japonicus genomic DNA, chromosome 1, clone... 44 2.8
52emb|AL713898.9| Mouse DNA sequence from clone RP23-253D13 on chr... 44 2.8
53gb|AC008372.6|AC008372 Homo sapiens chromosome 14 clones RP11-11... 44 2.8
54emb|AL391153.3|CNS06C7Z Human chromosome 14 DNA sequence BAC C-2... 44 2.8
55gb|AC149068.4| Mus musculus BAC clone RP23-7G19 from 18, complet... 44 2.8
56emb|CT010467.6| Mouse DNA sequence from clone RP23-81C12 on chro... 44 2.8
57emb|AL670708.9| Mouse DNA sequence from clone RP23-125A21 on chr... 44 2.8 
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast
             intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes,
             complete cds
          Length = 65979
 Score =  351 bits (177), Expect = 9e-93
 Identities = 234/253 (92%)
 Strand = Plus / Plus

                                                                         
Query: 2452  tgtagtgccccaagtgtaagactttccctttttgtaaccttccatgtgggaccaccttga 2511
             ||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 20145 tgtagggccccaagtgtaaagctttccctttttgtaaccttccatgtgggaccaccttga 20204

                                                                         
Query: 2512  ctttgtcatgagagttatctatgcatgcatgatttcatgtgtcaccttgtgttcttcctt 2571
             | |||||||||||| |||||||||||| |||||||||||||||||||||| |||||| ||
Sbjct: 20205 cattgtcatgagagctatctatgcatgtatgatttcatgtgtcaccttgtattcttcttt 20264

                                                                         
Query: 2572  tgcatgcatgcatccatgtcataccatccttgccatacctgatgatgctatgtcttgata 2631
             |||||||||||||||||| |||||||||| |||||||||| ||||| ||||||| || ||
Sbjct: 20265 tgcatgcatgcatccatgccataccatccatgccataccttatgattctatgtcatgtta 20324

                                                                         
Query: 2632  tgattgcatgtgatcttgctaggtgtgatgttgtggtcttgtaatttcttgtgttgatgc 2691
             ||||||||||||||||||||||||||||| ||||| |||||| || || |||||||||||
Sbjct: 20325 tgattgcatgtgatcttgctaggtgtgattttgtgatcttgtgatgtcatgtgttgatgc 20384

                          
Query: 2692  acatgtgatgatg 2704
             |||||||||||||
Sbjct: 20385 acatgtgatgatg 20397
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>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence
          Length = 285506

 Score =  135 bits (68), Expect = 1e-27
 Identities = 71/72 (98%)
 Strand = Plus / Plus

                                                                          
Query: 1286   ttcttgatgtttgcgagtacattcaaagtactcactggcttgtccctggctattgtcttg 1345
              ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265763 ttctttatgtttgcgagtacattcaaagtactcactggcttgtccctggctattgtcttg 265822

                          
Query: 1346   gccagatttctt 1357
              ||||||||||||
Sbjct: 265823 gccagatttctt 265834



 Score = 63.9 bits (32), Expect = 3e-06
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                      
Query: 905    agccctttatgtggtgtcgcttagatgcctgactgtggca 944
              ||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 265123 agccctttatgtggtgtcgcttagacgcccgactgtggca 265162



 Score = 56.0 bits (28), Expect = 7e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 905    agccctttatgtggtgtcgcttagatgcctgactgtggca 944
              ||||||||||||||||||||| ||| ||| ||||||||||
Sbjct: 265273 agccctttatgtggtgtcgctcagacgcccgactgtggca 265312



 Score = 56.0 bits (28), Expect = 7e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 905    agccctttatgtggtgtcgcttagatgcctgactgtggca 944
              ||||||||||||||||||||| ||| ||| ||||||||||
Sbjct: 265373 agccctttatgtggtgtcgctcagacgcccgactgtggca 265412



 Score = 56.0 bits (28), Expect = 7e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 905    agccctttatgtggtgtcgcttagatgcctgactgtggca 944
              ||||||||||||||||||||| ||| ||| ||||||||||
Sbjct: 265473 agccctttatgtggtgtcgctcagacgcccgactgtggca 265512



 Score = 56.0 bits (28), Expect = 7e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 905    agccctttatgtggtgtcgcttagatgcctgactgtggca 944
              ||||||||||||||||||||| ||| ||| ||||||||||
Sbjct: 265523 agccctttatgtggtgtcgctcagacgcccgactgtggca 265562



 Score = 56.0 bits (28), Expect = 7e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 905    agccctttatgtggtgtcgcttagatgcctgactgtggca 944
              ||||||||||||||||||||| ||| ||| ||||||||||
Sbjct: 265573 agccctttatgtggtgtcgctcagacgcccgactgtggca 265612



 Score = 54.0 bits (27), Expect = 0.003
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                     
Query: 844    aagccctttctgcagtgtcgcttagacgcccgactgtgg 882
              ||||||||| ||  |||||||||||||||||||||||||
Sbjct: 265122 aagccctttatgtggtgtcgcttagacgcccgactgtgg 265160



 Score = 48.1 bits (24), Expect = 0.18
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 905    agccctttatgtggtgtcgcttagatgcctgactgtggca 944
              ||||||||||||||||||||| ||| ||| |||| |||||
Sbjct: 265173 agccctttatgtggtgtcgctcagacgcccgactatggca 265212



 Score = 48.1 bits (24), Expect = 0.18
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 905    agccctttatgtggtgtcgcttagatgcctgactgtggca 944
              ||||| ||||||||||||||| ||| ||| ||||||||||
Sbjct: 265223 agccccttatgtggtgtcgctcagacgcccgactgtggca 265262



 Score = 48.1 bits (24), Expect = 0.18
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 905    agccctttatgtggtgtcgcttagatgcctgactgtggca 944
              |||||||||||||||||| || ||| ||| ||||||||||
Sbjct: 265323 agccctttatgtggtgtctctcagacgcccgactgtggca 265362



 Score = 48.1 bits (24), Expect = 0.18
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 905    agccctttatgtggtgtcgcttagatgcctgactgtggca 944
              ||||||||||||||||||||| ||| ||| ||| ||||||
Sbjct: 265423 agccctttatgtggtgtcgctcagacgcccgacagtggca 265462



 Score = 46.1 bits (23), Expect = 0.70
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 844    aagccctttctgcagtgtcgcttagacgcccgactgtgg 882
              ||||||||| ||  |||||||| ||||||||||||||||
Sbjct: 265272 aagccctttatgtggtgtcgctcagacgcccgactgtgg 265310



 Score = 46.1 bits (23), Expect = 0.70
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 844    aagccctttctgcagtgtcgcttagacgcccgactgtgg 882
              ||||||||| ||  |||||||| ||||||||||||||||
Sbjct: 265372 aagccctttatgtggtgtcgctcagacgcccgactgtgg 265410



 Score = 46.1 bits (23), Expect = 0.70
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 844    aagccctttctgcagtgtcgcttagacgcccgactgtgg 882
              ||||||||| ||  |||||||| ||||||||||||||||
Sbjct: 265472 aagccctttatgtggtgtcgctcagacgcccgactgtgg 265510



 Score = 46.1 bits (23), Expect = 0.70
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 844    aagccctttctgcagtgtcgcttagacgcccgactgtgg 882
              ||||||||| ||  |||||||| ||||||||||||||||
Sbjct: 265522 aagccctttatgtggtgtcgctcagacgcccgactgtgg 265560



 Score = 46.1 bits (23), Expect = 0.70
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 844    aagccctttctgcagtgtcgcttagacgcccgactgtgg 882
              ||||||||| ||  |||||||| ||||||||||||||||
Sbjct: 265572 aagccctttatgtggtgtcgctcagacgcccgactgtgg 265610
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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 91.7 bits (46), Expect = 1e-14
 Identities = 98/114 (85%), Gaps = 1/114 (0%)
 Strand = Plus / Minus

                                                                         
Query: 556   tgactattgaaacccgtgggctgtgggtaaagattacaccctttgcagtgtcaaaactat 615
             ||||||| ||||||||| || |||||||||||| ||| |||| | ||| |||||||||||
Sbjct: 71617 tgactatcgaaacccgttggttgtgggtaaagagtac-ccctctacagagtcaaaactat 71559

                                                                   
Query: 616   tcgagtagccgtgtgcacggtaaaggacgactggttgactggtcaagtgtcggt 669
             |||| |||||| || || ||| |||||||| ||||||||  |||||||||||||
Sbjct: 71558 tcgattagccgcgtccatggtcaaggacgattggttgacatgtcaagtgtcggt 71505



 Score = 61.9 bits (31), Expect = 1e-05
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                         
Query: 219   ttcccgaaagggaatacattttagtaggtcataaacctattaccaggtacacaccaagta 278
             |||||||||||||||||  ||||||||||   || |||||| ||| ||||||||||||||
Sbjct: 71947 ttcccgaaagggaatacgatttagtaggttgcaaccctatttccatgtacacaccaagta 71888

                
Query: 279   gag 281
             |||
Sbjct: 71887 gag 71885
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>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score = 77.8 bits (39), Expect = 2e-10
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                        
Query: 2452  tgtagtgccccaagtgtaagactttccctttttgtaaccttccatgtgggaccaccttg 2510
             |||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||
Sbjct: 58785 tgtaatgccccaagtgtagaactttcccttcttgtaaccttccatgtggggccaccttg 58843



 Score = 77.8 bits (39), Expect = 2e-10
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                        
Query: 2452  tgtagtgccccaagtgtaagactttccctttttgtaaccttccatgtgggaccaccttg 2510
             |||| |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||
Sbjct: 69588 tgtaatgccccaagtgtagaactttcccttcttgtaaccttccatgtggggccaccttg 69646



 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 45/49 (91%), Gaps = 1/49 (2%)
 Strand = Plus / Plus

                                                               
Query: 1292   atgtttgcgagtacattcaaag-tactcactggcttgtccctggctatt 1339
              ||||||||||||||||| |||  ||||||||||||||||||||| ||||
Sbjct: 285075 atgtttgcgagtacattaaaatatactcactggcttgtccctgggtatt 285123



 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 45/49 (91%), Gaps = 1/49 (2%)
 Strand = Plus / Plus

                                                               
Query: 1292   atgtttgcgagtacattcaaag-tactcactggcttgtccctggctatt 1339
              ||||||||||||||||| |||  ||||||||||||||||||||| ||||
Sbjct: 399303 atgtttgcgagtacattaaaatatactcactggcttgtccctgggtatt 399351



 Score = 54.0 bits (27), Expect = 0.003
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                     
Query: 1428   ttatccaagtcatctgttcctctgggaatggagtcccat 1466
              |||||||||||| | |||||||||||||||||| |||||
Sbjct: 247923 ttatccaagtcagccgttcctctgggaatggagccccat 247961
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>gb|AY204215.1| Hordeum vulgare subsp. spontaneum clone Ghs-L-4 Ty3-gypsy
            retrotransposon RT gene, partial sequence
          Length = 477

 Score = 69.9 bits (35), Expect = 5e-08
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                               
Query: 1293 tgtttgcgagtacattcaaagtactcactggcttg 1327
            |||||||||||||||||||||||||||||||||||
Sbjct: 413  tgtttgcgagtacattcaaagtactcactggcttg 379
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>gb|DQ128056.1| Triticum aestivum clone p3-5, genomic sequence
          Length = 374

 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 1296 ttgcgagtacattcaaagtactcactggcttgt 1328
            |||||||||| ||||||||||||||||||||||
Sbjct: 237  ttgcgagtactttcaaagtactcactggcttgt 269
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>gb|DQ128055.1| Triticum aestivum clone p3-3, genomic sequence
          Length = 484

 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 1296 ttgcgagtacattcaaagtactcactggcttgt 1328
            |||||||||| ||||||||||||||||||||||
Sbjct: 233  ttgcgagtactttcaaagtactcactggcttgt 265
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>gb|DQ128054.1| Triticum aestivum clone p3-2, genomic sequence
          Length = 310

 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 1296 ttgcgagtacattcaaagtactcactggcttgt 1328
            |||||||||| ||||||||||||||||||||||
Sbjct: 239  ttgcgagtactttcaaagtactcactggcttgt 271
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>gb|DQ145754.1| Triticum aestivum clone A3-3, genomic sequence
          Length = 493

 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 1296 ttgcgagtacattcaaagtactcactggcttgt 1328
            |||||||||| ||||||||||||||||||||||
Sbjct: 237  ttgcgagtactttcaaagtactcactggcttgt 269
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>gb|DQ128047.1| Triticum aestivum clone P8-1 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 473

 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 1296 ttgcgagtacattcaaagtactcactggcttgt 1328
            |||||||||| ||||||||||||||||||||||
Sbjct: 237  ttgcgagtactttcaaagtactcactggcttgt 269
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>gb|DQ128046.1| Triticum aestivum clone P4-6 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 494

 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 1296 ttgcgagtacattcaaagtactcactggcttgt 1328
            |||||||||| ||||||||||||||||||||||
Sbjct: 238  ttgcgagtactttcaaagtactcactggcttgt 270
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>gb|DQ128042.1| Triticum aestivum clone A6-6 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 336

 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 1296 ttgcgagtacattcaaagtactcactggcttgt 1328
            |||||||||| ||||||||||||||||||||||
Sbjct: 80   ttgcgagtactttcaaagtactcactggcttgt 112
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>gb|DQ128041.1| Triticum aestivum clone A4-5 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 487

 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 1296 ttgcgagtacattcaaagtactcactggcttgt 1328
            |||||||||| ||||||||||||||||||||||
Sbjct: 231  ttgcgagtactttcaaagtactcactggcttgt 263
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>gb|DQ128040.1| Triticum aestivum clone A4-4 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 470

 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 1296 ttgcgagtacattcaaagtactcactggcttgt 1328
            |||||||||| ||||||||||||||||||||||
Sbjct: 232  ttgcgagtactttcaaagtactcactggcttgt 264
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>gb|DQ128038.1| Triticum aestivum clone A4-1 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 410

 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 1296 ttgcgagtacattcaaagtactcactggcttgt 1328
            |||||||||| ||||||||||||||||||||||
Sbjct: 155  ttgcgagtactttcaaagtactcactggcttgt 187
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>gb|DQ128035.1| Triticum aestivum clone A3-4 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 486

 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 1296 ttgcgagtacattcaaagtactcactggcttgt 1328
            |||||||||| ||||||||||||||||||||||
Sbjct: 230  ttgcgagtactttcaaagtactcactggcttgt 262
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>gb|DQ128034.1| Triticum aestivum clone A3-3 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 342

 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 1296 ttgcgagtacattcaaagtactcactggcttgt 1328
            |||||||||| ||||||||||||||||||||||
Sbjct: 86   ttgcgagtactttcaaagtactcactggcttgt 118
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>gb|DQ128033.1| Triticum aestivum clone A2-6 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 258

 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 1296 ttgcgagtacattcaaagtactcactggcttgt 1328
            |||||||||| ||||||||||||||||||||||
Sbjct: 2    ttgcgagtactttcaaagtactcactggcttgt 34
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>gb|DQ128043.1| Triticum aestivum clone A8-1 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 239

 Score = 56.0 bits (28), Expect = 7e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                            
Query: 1297 tgcgagtacattcaaagtactcactggcttgt 1328
            ||||||||| ||||||||||||||||||||||
Sbjct: 1    tgcgagtactttcaaagtactcactggcttgt 32
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>gb|DQ128029.1| Triticum turgidum clone Td3-2, genomic sequence
          Length = 403

 Score = 52.0 bits (26), Expect = 0.011
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 905 agccctttatgtggtgtcgcttagatgcctgactgtgg 942
           ||||||||||||||||||||| ||| ||| ||||||||
Sbjct: 212 agccctttatgtggtgtcgctaagacgcccgactgtgg 175



 Score = 52.0 bits (26), Expect = 0.011
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 905 agccctttatgtggtgtcgcttagatgcctgactgtgg 942
           ||||||||||||||||||||| ||| ||| ||||||||
Sbjct: 312 agccctttatgtggtgtcgctaagacgcccgactgtgg 275



 Score = 50.1 bits (25), Expect = 0.045
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 844 aagccctttctgcagtgtcgcttagacgcccgactgtggta 884
           ||||||||| ||  |||||||| ||||||||||||||||||
Sbjct: 313 aagccctttatgtggtgtcgctaagacgcccgactgtggta 273



 Score = 48.1 bits (24), Expect = 0.18
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 844 aagccctttctgcagtgtcgcttagacgcccgactgtggt 883
           ||||||||| ||  |||||||| |||||||||||||||||
Sbjct: 213 aagccctttatgtggtgtcgctaagacgcccgactgtggt 174



 Score = 48.1 bits (24), Expect = 0.18
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 1047 ccctttatgtaatgtcgctaagacgcctgactgtgg 1082
            ||||||||||  ||||||||||||||| ||||||||
Sbjct: 210  ccctttatgtggtgtcgctaagacgcccgactgtgg 175



 Score = 48.1 bits (24), Expect = 0.18
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 1047 ccctttatgtaatgtcgctaagacgcctgactgtgg 1082
            ||||||||||  ||||||||||||||| ||||||||
Sbjct: 310  ccctttatgtggtgtcgctaagacgcccgactgtgg 275
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>gb|DQ128044.1| Triticum aestivum clone A8-5 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 262

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 1296 ttgcgagtacattcaaagtactcactggcttgt 1328
            |||||||||| ||||| ||||||||||||||||
Sbjct: 6    ttgcgagtactttcaaggtactcactggcttgt 38
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>gb|DQ128039.1| Triticum aestivum clone A4-3 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 490

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 1296 ttgcgagtacattcaaagtactcactggcttgt 1328
            |||||||||| ||| ||||||||||||||||||
Sbjct: 234  ttgcgagtactttcgaagtactcactggcttgt 266
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>gb|DQ128037.1| Triticum aestivum clone A3-6 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 488

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 1296 ttgcgagtacattcaaagtactcactggcttgt 1328
            |||||||||| ||||||||| ||||||||||||
Sbjct: 232  ttgcgagtactttcaaagtattcactggcttgt 264
to top
>gb|AY919050.1| Lolium perenne clone LpSSR026 SSR marker sequence
          Length = 529

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                    
Query: 590 tacaccctttgcagtgtcaaaactattcgagtagccgtgtgcacggtaaaggacgac 646
           |||| ||| ||||| || |||||||||||| ||||||||| |||||| | |||||||
Sbjct: 107 tacaacctctgcagagttaaaactattcgaatagccgtgtccacggtcatggacgac 163
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>gb|U58023.1|PSU58023 Pseudoroegneria stipifolia RAPD fragment from primer OPN01
          Length = 817

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 1296 ttgcgagtacattcaaagtactcac 1320
            |||||||||||||||||||||||||
Sbjct: 642  ttgcgagtacattcaaagtactcac 618
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>dbj|AP004506.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT03K03, TM0036a,
             complete sequence
          Length = 62624

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 1753  ggggataaaaacacaaagttcttccatct 1781
             |||||||||||||||||||| ||||||||
Sbjct: 54099 ggggataaaaacacaaagtttttccatct 54071
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>emb|AL929524.16| Mouse DNA sequence from clone RP23-440D4 on chromosome 4, complete
             sequence
          Length = 159107

 Score = 48.1 bits (24), Expect = 0.18
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 2760  aacccttttcctttccttttatct 2783
             ||||||||||||||||||||||||
Sbjct: 12092 aacccttttcctttccttttatct 12069
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>gb|AC182012.3| Otolemur garnettii clone CH256-376P14, complete sequence
          Length = 224337

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 1407   acaaccttgtgagatgggaattt 1429
              |||||||||||||||||||||||
Sbjct: 107349 acaaccttgtgagatgggaattt 107327
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>gb|AC165236.5| Mus musculus chromosome 5, clone RP23-348C18, complete sequence
          Length = 204772

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 2762  cccttttcctttccttttatctc 2784
             |||||||||||||||||||||||
Sbjct: 52538 cccttttcctttccttttatctc 52560
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>gb|AC165335.3| Mus musculus BAC clone RP24-481H19 from chromosome 5, complete sequence
          Length = 212783

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 2762   cccttttcctttccttttatctc 2784
              |||||||||||||||||||||||
Sbjct: 190030 cccttttcctttccttttatctc 190052
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>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17,
              complete sequence
          Length = 148829

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 606    tcaaaactattcgagtagccgtg 628
              |||||||||||||||||||||||
Sbjct: 119375 tcaaaactattcgagtagccgtg 119353
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>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0007D07, complete sequence
          Length = 133930

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 606   tcaaaactattcgagtagccgtg 628
             |||||||||||||||||||||||
Sbjct: 18994 tcaaaactattcgagtagccgtg 18972
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>gb|AC123859.4| Mus musculus BAC clone RP23-346B13 from chromosome 3, complete sequence
          Length = 221423

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 1275   acttatttgttttcttgatgttt 1297
              |||||||||||||||||||||||
Sbjct: 139735 acttatttgttttcttgatgttt 139757
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>gb|AC127282.3| Mus musculus BAC clone RP23-318O24 from chromosome 5, complete sequence
          Length = 222651

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 2762   cccttttcctttccttttatctc 2784
              |||||||||||||||||||||||
Sbjct: 201624 cccttttcctttccttttatctc 201602
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>gb|DQ249273.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC 631P8, complete
             sequence
          Length = 101158

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 1293  tgtttgcgagtacattcaaagtactcactggcttg 1327
             ||||||||||| ||||||||||||| | |||||||
Sbjct: 27901 tgtttgcgagttcattcaaagtacttattggcttg 27867
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>gb|AC159291.3| Mus musculus BAC clone RP23-287P9 from chromosome 5, complete sequence
          Length = 197357

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 2762  cccttttcctttccttttatctc 2784
             |||||||||||||||||||||||
Sbjct: 66076 cccttttcctttccttttatctc 66098
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>gb|AC158361.3| Mus musculus BAC clone RP23-227A12 from chromosome 3, complete sequence
          Length = 211804

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 1275   acttatttgttttcttgatgttt 1297
              |||||||||||||||||||||||
Sbjct: 170919 acttatttgttttcttgatgttt 170897
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 606      tcaaaactattcgagtagccgtg 628
                |||||||||||||||||||||||
Sbjct: 19016177 tcaaaactattcgagtagccgtg 19016155
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>gb|AC156019.2| Mus musculus BAC clone RP23-348E17 from 5, complete sequence
          Length = 204727

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 2762  cccttttcctttccttttatctc 2784
             |||||||||||||||||||||||
Sbjct: 52538 cccttttcctttccttttatctc 52560
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>gb|AC168268.2| Mus musculus BAC clone RP23-339K12 from chromosome 17, complete
             sequence
          Length = 184085

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1664  aaataaagataaatgaaaattt 1685
             ||||||||||||||||||||||
Sbjct: 24334 aaataaagataaatgaaaattt 24313



 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1664  aaataaagataaatgaaaattt 1685
             ||||||||||||||||||||||
Sbjct: 61911 aaataaagataaatgaaaattt 61932
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>gb|AC123659.11| Mus musculus chromosome 17, clone RP23-192P18, complete sequence
          Length = 207169

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1664  aaataaagataaatgaaaattt 1685
             ||||||||||||||||||||||
Sbjct: 20791 aaataaagataaatgaaaattt 20812



 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 1664   aaataaagataaatgaaaattt 1685
              ||||||||||||||||||||||
Sbjct: 146649 aaataaagataaatgaaaattt 146670
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>gb|AC123740.12| Mus musculus chromosome 17, clone RP24-94I20, complete sequence
          Length = 167513

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1664 aaataaagataaatgaaaattt 1685
            ||||||||||||||||||||||
Sbjct: 1602 aaataaagataaatgaaaattt 1581



 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1664   aaataaagataaatgaaaattt 1685
              ||||||||||||||||||||||
Sbjct: 153064 aaataaagataaatgaaaattt 153043
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>gb|DQ128063.1| Triticum monococcum clone tm3-1, genomic sequence
          Length = 499

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Plus

                                              
Query: 1296 ttgcgagtacat-tcaaagtactcactggcttgt 1328
            |||||||||| | |||||||||||||||||||||
Sbjct: 241  ttgcgagtacttctcaaagtactcactggcttgt 274
to top
>gb|DQ128062.1| Triticum monococcum clone p8-3, genomic sequence
          Length = 474

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Plus

                                              
Query: 1296 ttgcgagtacat-tcaaagtactcactggcttgt 1328
            |||||||||| | |||||||||||||||||||||
Sbjct: 241  ttgcgagtacttctcaaagtactcactggcttgt 274
to top
>gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete sequence
          Length = 101101

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 1675  aatgaaaatttggtagagatgtaccacatggaggaattgatgtggcgaca 1724
             |||||||| ||| | ||||||||||||  ||||||| | |||||||||||
Sbjct: 83073 aatgaaaagttgattgagatgtaccaccgggaggaaattatgtggcgaca 83024
to top
>gb|DQ128045.1| Triticum aestivum clone P4-4 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 250

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1307 ttcaaagtactcactggcttgt 1328
            ||||||||||||||||||||||
Sbjct: 4    ttcaaagtactcactggcttgt 25
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>gb|AC134447.2| Mus musculus BAC clone RP24-186D1 from chromosome 18, complete sequence
          Length = 179514

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1277  ttatttgttttcttgatgtttg 1298
             ||||||||||||||||||||||
Sbjct: 48055 ttatttgttttcttgatgtttg 48076
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>gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0082N11, from chromosome 10, complete sequence
          Length = 127525

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 608   aaaactattcgagtagccgtgtgcacggtaaaggacga 645
             |||||||||||| ||||||||| |||||| | ||||||
Sbjct: 73557 aaaactattcgaatagccgtgtccacggttacggacga 73520
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>gb|AC113339.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
            Nipponbare clone OSJNBb0047B19, from chromosome 10,
            complete sequence
          Length = 137015

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 608  aaaactattcgagtagccgtgtgcacggtaaaggacga 645
            |||||||||||| ||||||||| |||||| | ||||||
Sbjct: 6032 aaaactattcgaatagccgtgtccacggttacggacga 5995
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10
          Length = 22685906

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 608     aaaactattcgagtagccgtgtgcacggtaaaggacga 645
               |||||||||||| ||||||||| |||||| | ||||||
Sbjct: 7563038 aaaactattcgaatagccgtgtccacggttacggacga 7563001
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>dbj|AP007300.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT29K22, TM0275,
             complete sequence
          Length = 104570

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 981   gccctttttgtggtgttgctcc 1002
             ||||||||||||||||||||||
Sbjct: 15055 gccctttttgtggtgttgctcc 15076
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>emb|AL713898.9| Mouse DNA sequence from clone RP23-253D13 on chromosome X, complete
              sequence
          Length = 189001

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 1276   cttatttgttttcttgatgttt 1297
              ||||||||||||||||||||||
Sbjct: 109426 cttatttgttttcttgatgttt 109447
to top
>gb|AC008372.6|AC008372 Homo sapiens chromosome 14 clones RP11-111O16 and RP11-61F4 containing
             genes for nuclear receptor coactivator NCoA-62 (nuclear
             receptor coactivator NCoA-62) gene, complete cds; and
             unknown gene, complete sequence
          Length = 268238

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 16    ttattatgagaccatggactaa 37
             ||||||||||||||||||||||
Sbjct: 25065 ttattatgagaccatggactaa 25044
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>emb|AL391153.3|CNS06C7Z Human chromosome 14 DNA sequence BAC C-2576L4 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 172336

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 643    cgactggttgactggtcaagtg 664
              ||||||||||||||||||||||
Sbjct: 107377 cgactggttgactggtcaagtg 107356
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>gb|AC149068.4| Mus musculus BAC clone RP23-7G19 from 18, complete sequence
          Length = 232071

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 1277   ttatttgttttcttgatgtttg 1298
              ||||||||||||||||||||||
Sbjct: 193294 ttatttgttttcttgatgtttg 193315
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>emb|CT010467.6| Mouse DNA sequence from clone RP23-81C12 on chromosome 17, complete
             sequence
          Length = 216559

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1664  aaataaagataaatgaaaattt 1685
             ||||||||||||||||||||||
Sbjct: 93162 aaataaagataaatgaaaattt 93141
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>emb|AL670708.9| Mouse DNA sequence from clone RP23-125A21 on chromosome 4, complete
             sequence
          Length = 207097

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1272  ttaacttatttgttttcttgat 1293
             ||||||||||||||||||||||
Sbjct: 43817 ttaacttatttgttttcttgat 43796


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 551,164,531
Number of extensions: 30746461
Number of successful extensions: 187288
Number of sequences better than 10.0: 57
Number of HSP's gapped: 187285
Number of HSP's successfully gapped: 86
Length of query: 2864
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 2841
Effective length of database: 18,503,978,556
Effective search space: 52569803077596
Effective search space used: 52569803077596
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)
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