>LOC_Os07g43730:12007.t04017:unspliced-genomic transcription elongation factor 1, putative, expressed|
Length = 2603
Score = 64.8 bits (135), Expect(4) = 6e-29
Identities = 26/44 (59%), Positives = 29/44 (65%)
Frame = +3 / +2
Query: 84 RKTS*TMGXXXXXXXXXXXXXMDKLDTVFSCPFCNHGSSVECRI 215
+K +* MG MDKLDTVFSCPFCNHGSSVECR+
Sbjct: 1172 KKVT*AMGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRM 1303
Score = 55.6 bits (115), Expect(4) = 6e-29
Identities = 20/25 (80%), Positives = 24/25 (96%)
Frame = +3 / +3
Query: 216 DMKNLIGEANCRICQESFSTTINAL 290
DMKNLIGEA+CRICQE+FSTT+N +
Sbjct: 1392 DMKNLIGEASCRICQENFSTTVNGM 1466
Score = 36.3 bits (73), Expect(4) = 6e-29
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 309 YSEWIDECERVNAV 350
YSEWIDECERVN V
Sbjct: 2141 YSEWIDECERVNNV 2182
Score = 35.0 bits (70), Expect(4) = 6e-29
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3 / +3
Query: 420 ALVLLAATFSHVCSSVV 470
ALVLL ATFSHVC+SV+
Sbjct: 2235 ALVLLTATFSHVCNSVM 2285
Score = 85.8 bits (181), Expect(4) = 5e-26
Identities = 37/43 (86%), Positives = 38/43 (88%)
Frame = -1 / -3
Query: 214 IRHSTLLPWLQNGQEKTVSSLSIRFLGGGLAADFLFPMVQLVF 86
IRHSTLLP LQNGQE TVSSLSI FLGGGLAADFLFPM Q+ F
Sbjct: 1302 IRHSTLLP*LQNGQENTVSSLSILFLGGGLAADFLFPMAQVTF 1174
Score = 35.9 bits (72), Expect(4) = 5e-26
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -1 / -2
Query: 490 LTVRSASTTLLQTWLKVAANNTNA 419
L ++ TLLQTWLKVA N+T+A
Sbjct: 2305 LLTNQSAITLLQTWLKVAVNSTSA 2234
Score = 33.6 bits (67), Expect(4) = 5e-26
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -1 / -2
Query: 277 VVLKLSWQIRQFASPIRFFISI 212
VVLK S QI ASPIRFFIS+
Sbjct: 1453 VVLKFS*QILHEASPIRFFISL 1388
Score = 26.3 bits (51), Expect(4) = 5e-26
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3 / -2
Query: 350 DSVDALALIDPFAV 309
D VD LALI+PFA+
Sbjct: 2182 DIVDTLALINPFAI 2141
Score = 59.7 bits (124), Expect(4) = 1e-14
Identities = 26/44 (59%), Positives = 28/44 (63%)
Frame = +1 / +3
Query: 79 KGEKQVEPWGRESQLLSHPLRSGWTSSTRSFPARSATMGAALNA 210
+G K +EPW R SQ LSH LR GWTS FPA SA M LNA
Sbjct: 1167 EGRK*LEPWERGSQRLSHHLRRGWTSLILYFPAHSAIMAVVLNA 1298
Score = 29.0 bits (57), Expect(4) = 1e-14
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2 / +2
Query: 215 *YEESDW*GELSNLPGKLQHH 277
*YEE D G + +L GKLQHH
Sbjct: 1391 *YEEPDRRGFM*DLSGKLQHH 1453
Score = 29.0 bits (57), Expect(4) = 1e-14
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1 / +1
Query: 385 LPNEMVTTMTVMRWCYWLPPSAMFVV 462
+ N + + WCY LPPSA V+
Sbjct: 2200 MSNAKCLMLPYLHWCY*LPPSATSVI 2277
Score = 24.4 bits (47), Expect(4) = 1e-14
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1 / +3
Query: 313 ANGSMSASASTLSE 354
ANG MSAS ST+S+
Sbjct: 2145 ANGLMSASVSTMSK 2186
Score = 54.7 bits (113), Expect(4) = 5e-14
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = -3 / -2
Query: 224 LHINSAFNAAPMVAERAGKDRVELVHPLLRGWXXXXXXLPHGSTCFSPFK 75
L+ + AFN M+AE AGK ++LVHPLLR W L HGS+ F P K
Sbjct: 1312 LYSHPAFNTTAMIAEWAGKYSIKLVHPLLRWWLSR*LPLSHGSSYFLPSK 1163
Score = 32.2 bits (64), Expect(4) = 5e-14
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3 / -1
Query: 296 LSQRIYGGAEAFLADSTIRLTNQILHI 216
L+ I GAE FL D T L +Q+LHI
Sbjct: 1472 LTHTIDSGAEVFLTDPT*SLADQVLHI 1392
Score = 28.1 bits (55), Expect(4) = 5e-14
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3 / -1
Query: 470 HDATTNMAEGGSQ*HQ 423
H T++AEGGSQ*HQ
Sbjct: 2285 HYTITDVAEGGSQ*HQ 2238
Score = 24.9 bits (48), Expect(4) = 5e-14
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1 / -2
Query: 550 GSNASTQYHRLFIKRRMNCLLTVRSASTTL 461
GS + +++ MNCLLT +SA T L
Sbjct: 2362 GSRYNITSSGVYLGAGMNCLLTNQSAITLL 2273
Score = 54.2 bits (112), Expect(3) = 6e-12
Identities = 25/45 (55%), Positives = 28/45 (62%)
Frame = -2 / -1
Query: 210 GIQRCSHGCRTGRKRPCRACPSAS*GVA*QLTFSSPWFNLFFSLQ 76
GIQ H CR GRK +ACPS+S* VA* LT S PW L S +
Sbjct: 1298 GIQHYCHDCRMGRKIQYQACPSSS*VVA*PLTSSFPWLKLLSSFK 1164
Score = 32.2 bits (64), Expect(3) = 6e-12
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2 / -3
Query: 285 HLWWC*SFPGRFDNSPHQSDSSYQF 211
H WC*SFP R P +S SSY +
Sbjct: 1461 H*QWC*SFPDRSYMKPRRSGSSYHW 1387
Score = 27.6 bits (54), Expect(3) = 6e-12
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2 / -3
Query: 462 YYKHG*RWQPITP 424
YY+ G*RWQ I P
Sbjct: 2277 YYRRG*RWQSIAP 2239
Score = 57.9 bits (120), Expect(2) = 2e-09
Identities = 25/45 (55%), Positives = 36/45 (80%)
Frame = +2 / +1
Query: 80 REKNKLNHGEEKVSC*ATP*EADGQARHGLFLPVLQPWEQR*MPN 214
+E++ L+HG+E+VS *AT *E DGQA + +FLP+LQ W+ *MP+
Sbjct: 1168 KEESNLSHGKEEVSG*ATT*EEDGQA*YCIFLPILQSWQ*C*MPD 1302
Score = 27.6 bits (54), Expect(2) = 2e-09
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +2 / +2
Query: 419 CVGVIGCHLQPCL** 463
C G I CHLQP L**
Sbjct: 2234 CTGAIDCHLQPRL** 2278
>LOC_Os06g06270:12006.t00513:unspliced-genomic transcription elongation factor 1, putative|
Length = 327
Score = 119 bits (254), Expect = 3e-26
Identities = 42/65 (64%), Positives = 54/65 (83%)
Frame = +3 / +1
Query: 153 KLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWIDEC 332
KL+T FSCPFC+HG +VEC ID+K++I EA+C +CQ +STT +ALTEPID+YSEWID+C
Sbjct: 61 KLETAFSCPFCDHGGAVECSIDIKHMIAEASCFVCQARYSTTAHALTEPIDVYSEWIDQC 240
Query: 333 ERVNA 347
E A
Sbjct: 241 ELAKA 255
Score = 61.6 bits (128), Expect = 6e-09
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = -3 / -1
Query: 335 LALIDPFAVYINRLSQRIYGGAEAFLADSTIRLTNQILHINSAFNAAPMVAERAGKDRVE 156
LAL+DP AV ++ L +R+ GG A LAD L + +L +++A + A +VAERA + R++
Sbjct: 243 LALVDPLAVDVDGLGERVGGGGVARLADEAGGLGDHVLDVDAALHRAAVVAERAAERRLQ 64
Query: 155 LVHPLLR 135
L LLR
Sbjct: 63 LRRRLLR 43
Score = 51.9 bits (107), Expect = 5e-06
Identities = 25/51 (49%), Positives = 30/51 (58%)
Frame = -1 / -2
Query: 292 VSAFMVVLKLSWQIRQFASPIRFFISIRHSTLLPWLQNGQEKTVSSLSIRF 140
VSA+ VV +WQ +Q AS I +S+ HST PW QNGQ VSS F
Sbjct: 200 VSAWAVVE*RAWQTKQEASAIMCLMSMLHSTAPPWSQNGQLNAVSSFGAAF 48
Score = 34.5 bits (69), Expect = 0.84
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +2 / +3
Query: 140 EADGQARHGLFLPVLQPWEQR*MPN*YEESDW*GELSNLPGKLQHHHKCAD*AY*YIQ 313
E +A G+ LPVL+P + + + ++ D G L LPG L HH A A+ +Q
Sbjct: 48 EGGAEAGDGVQLPVLRPRRRGGVQHRHQAHDRRGLLLRLPGALLHHRPRAHRAHRRLQ 221
>LOC_Os02g04160:12002.t00315:unspliced-genomic transcription elongation factor 1, putative, expressed|
Length = 2805
Score = 61.1 bits (127), Expect(3) = 3e-21
Identities = 25/45 (55%), Positives = 27/45 (60%)
Frame = +3 / +3
Query: 81 GRKTS*TMGXXXXXXXXXXXXXMDKLDTVFSCPFCNHGSSVECRI 215
G+ * MG MDKLDTVF CPFCNHGSSVECR+
Sbjct: 1011 GKNKR*IMGKRKSKAKPPPKKRMDKLDTVFCCPFCNHGSSVECRM 1145
Score = 49.6 bits (102), Expect(3) = 3e-21
Identities = 18/25 (72%), Positives = 23/25 (92%)
Frame = +3 / +1
Query: 210 RIDMKNLIGEANCRICQESFSTTIN 284
R D+KNLIGEA+CRIC E+FST++N
Sbjct: 1249 RSDLKNLIGEASCRICLETFSTSVN 1323
Score = 35.4 bits (71), Expect(3) = 3e-21
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3 / +1
Query: 309 YSEWIDECERVN 344
YSEWIDECERVN
Sbjct: 2194 YSEWIDECERVN 2229
Score = 90.0 bits (190), Expect(2) = 4e-21
Identities = 36/49 (73%), Positives = 41/49 (83%)
Frame = -1 / -3
Query: 214 IRHSTLLPWLQNGQEKTVSSLSIRFLGGGLAADFLFPMVQLVFLPSKSR 68
+RHSTLLPWLQNGQ+KTVSSLSI FLGGG A DFL PM+Q +F P +R
Sbjct: 1144 MRHSTLLPWLQNGQQKTVSSLSILFLGGGFALDFLLPMIQRLFFPPFAR 998
Score = 31.3 bits (62), Expect(2) = 4e-21
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = -1 / -2
Query: 274 VLKLSWQIRQFASPIRFFISIRHS 203
VLK+S QI ASPI+FF S+R++
Sbjct: 1313 VLKVSKQILHEASPIKFFRSLRNT 1242
Score = 40.5 bits (82), Expect = 0.014
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2 / +2
Query: 80 REKNKLNHGEEKVSC*ATP*EADGQARHGLFLPVLQP 190
REK LNHG+E+V T E +GQA + L L +LQP
Sbjct: 1010 REK*ALNHGQEEVQSKTTSQEENGQA*YCLLLSILQP 1120
Score = 34.5 bits (69), Expect(2) = 0.21
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2 / -1
Query: 204 QRCSHGCRTGRKRPCRACPSAS*GVA*QLTFSSPWFNLFFS 82
Q GC+ KR +ACP +S V T S P FN +FS
Sbjct: 1134 QHYFRGCKMDSKRQYQACPFSSWEVVLLWTSSCP*FNAYFS 1012
Score = 23.5 bits (45), Expect(2) = 0.21
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3 / -1
Query: 344 VDALALIDPFAV 309
V ALA +DPFAV
Sbjct: 2229 VHALAFVDPFAV 2194
Score = 31.8 bits (63), Expect = 5.6
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1 / +1
Query: 82 GEKQVEPWGRESQLLSHPLRSGWTSSTRSFPARSATMGAALN 207
G+ VE W R S +H R WTS SF AT L+
Sbjct: 1012 GKISVESWARGSPKQNHLPRREWTSLILSFAVHFATTEVVLS 1137
>LOC_Os01g40580:12001.t03582:unspliced-genomic hypersensitive-induced response protein, putative, expressed|
Length = 1592
Score = 29.9 bits (59), Expect(2) = 6.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3 / +3
Query: 6 PSSFLPSGVSPNRPSSSDPTP 68
PSS PS P PS++ PTP
Sbjct: 396 PSSTAPSPTGPTTPSTASPTP 458
Score = 22.1 bits (42), Expect(2) = 6.0
Identities = 9/31 (29%), Positives = 13/31 (41%)
Frame = +3 / +2
Query: 444 FSHVCSSVVLADRTVSRQFILRLINKR*YCV 536
F +C SV + QF + N YC+
Sbjct: 593 FPQMCGSVTSVFEVIILQFFPAIFNGTSYCL 685
>LOC_Os09g20550:12009.t01789:unspliced-genomic inhibitor of apoptosis, putative, expressed|
Length = 4788
Score = 24.4 bits (47), Expect(2) = 6.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1 / +2
Query: 100 PWGRESQLLSHPLRSGWTSSTRSFPARSATMGAALNA 210
P GR+S + R TSS + P R A G A +A
Sbjct: 4169 PRGRQSSPPTKGHRPRRTSSRKRLPRRQAVAGTA*SA 4279
Score = 24.0 bits (46), Expect(2) = 6.9
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 32 FPQPTLLVRP 61
FPQPTLLV P
Sbjct: 4130 FPQPTLLVWP 4159
>LOC_Os12g44320:12012.t04098:unspliced-genomic ATP binding protein, putative, expressed|
Length = 2833
Score = 27.2 bits (53), Expect(2) = 10.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1 / +2
Query: 106 GRESQLLSHPLRSGWTSSTRSFPARSAT 189
GR + R+GW + T + PARS+T
Sbjct: 1952 GRSGWACAWARRAGWRTCTPAAPARSST 2035
Score = 24.9 bits (48), Expect(2) = 10.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3 / +2
Query: 6 PSSFLPSGVSPNRPSSSDPTPR 71
PS S + PSS+ PTPR
Sbjct: 413 PSPLSASSTPASSPSSTPPTPR 478
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 267,164,648
Number of extensions: 3981015
Number of successful extensions: 19548
Number of sequences better than 10.0: 25
Length of query: 245
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 196
Effective length of database: 52,856,264
Effective search space: 10359827744
Effective search space used: 10359827744
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)