ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf30p05 |
|---|---|
| Clone Library Name | barley_pub |
>Q8LHP0:ELOF1_ORYSJ Transcription elongation factor 1 homolog - Oryza sativa subsp.| japonica (Rice) Length = 89 Score = 141 bits (356), Expect = 2e-33 Identities = 64/68 (94%), Positives = 67/68 (98%) Frame = +3 Query: 147 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWID 326 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEA+CRICQE+FSTT+NALTEPIDIYSEWID Sbjct: 16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWID 75 Query: 327 ECERVNAV 350 ECERVN V Sbjct: 76 ECERVNNV 83
>Q8LEF3:ELOF1_ARATH Transcription elongation factor 1 homolog - Arabidopsis thaliana| (Mouse-ear cress) Length = 120 Score = 127 bits (320), Expect = 3e-29 Identities = 58/66 (87%), Positives = 62/66 (93%) Frame = +3 Query: 147 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWID 326 MDKLDT+FSCPFCNHGSSVEC IDMK+LIG+A CRIC+ESFSTTI ALTE IDIYSEWID Sbjct: 16 MDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTEAIDIYSEWID 75 Query: 327 ECERVN 344 ECERVN Sbjct: 76 ECERVN 81
>P36053:ELF1_YEAST Transcription elongation factor 1 - Saccharomyces cerevisiae| (Baker's yeast) Length = 145 Score = 89.0 bits (219), Expect = 2e-17 Identities = 36/67 (53%), Positives = 49/67 (73%) Frame = +3 Query: 147 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWID 326 + KLDT F+C FCNH SV C +D KN IG +C+IC +SF T IN+L++P+D+YS+W D Sbjct: 16 VQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRINSLSQPVDVYSDWFD 75 Query: 327 ECERVNA 347 E VN+ Sbjct: 76 AVEEVNS 82
>Q9XVZ8:ELOF1_CAEEL Transcription elongation factor 1 homolog - Caenorhabditis elegans| Length = 84 Score = 85.1 bits (209), Expect = 3e-16 Identities = 33/63 (52%), Positives = 45/63 (71%) Frame = +3 Query: 156 LDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWIDECE 335 LDT F+CPFCNH E ++D + +G +CR+C E F T IN L+EPID+YS+W+D CE Sbjct: 20 LDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACE 79 Query: 336 RVN 344 + N Sbjct: 80 QAN 82
>Q8MQI6:ELOF1_DROME Transcription elongation factor 1 homolog - Drosophila melanogaster| (Fruit fly) Length = 82 Score = 79.3 bits (194), Expect = 1e-14 Identities = 31/66 (46%), Positives = 43/66 (65%) Frame = +3 Query: 147 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWID 326 ++ LD F+CPFCNH S E ++D + CR+C E F T IN L+EPID+Y++W+D Sbjct: 17 IEPLDQQFNCPFCNHEKSCEVKMDKSRNTAKITCRVCLEDFQTGINFLSEPIDVYNDWVD 76 Query: 327 ECERVN 344 CE N Sbjct: 77 ACETAN 82
>O13868:ELOF1_SCHPO Transcription elongation factor 1 homolog - Schizosaccharomyces| pombe (Fission yeast) Length = 107 Score = 77.4 bits (189), Expect = 5e-14 Identities = 31/62 (50%), Positives = 43/62 (69%) Frame = +3 Query: 156 LDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWIDECE 335 LDT F+C FCNH SV C +D ++ +G +C+IC +S I AL+ PID+YS+WID C+ Sbjct: 19 LDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDACD 78 Query: 336 RV 341 V Sbjct: 79 AV 80
>Q9U501:ELOF1_MANSE Transcription elongation factor 1 homolog - Manduca sexta (Tobacco| hawkmoth) (Tobacco hornworm) Length = 82 Score = 76.6 bits (187), Expect = 9e-14 Identities = 30/66 (45%), Positives = 41/66 (62%) Frame = +3 Query: 147 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWID 326 ++ LD F+CPFCNH S E ++D C +C E F TT N L+EPID+Y++W+D Sbjct: 17 IEPLDQQFNCPFCNHEKSCEVKMDRAKNTAMIQCTVCLEDFHTTTNVLSEPIDVYNDWVD 76 Query: 327 ECERVN 344 CE N Sbjct: 77 ACESAN 82
>P60003:ELOF1_MOUSE Transcription elongation factor 1 homolog - Mus musculus (Mouse)| Length = 83 Score = 76.3 bits (186), Expect = 1e-13 Identities = 30/63 (47%), Positives = 41/63 (65%) Frame = +3 Query: 156 LDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWIDECE 335 L+T F+CPFCNH S + ++D G +C +C E F T I L+EP+D+YS+WID CE Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACE 79 Query: 336 RVN 344 N Sbjct: 80 AAN 82
>P60002:ELOF1_HUMAN Transcription elongation factor 1 homolog - Homo sapiens (Human)| Length = 83 Score = 76.3 bits (186), Expect = 1e-13 Identities = 30/63 (47%), Positives = 41/63 (65%) Frame = +3 Query: 156 LDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWIDECE 335 L+T F+CPFCNH S + ++D G +C +C E F T I L+EP+D+YS+WID CE Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACE 79 Query: 336 RVN 344 N Sbjct: 80 AAN 82
>Q8STS7:ELOF1_ENCCU Transcription elongation factor 1 homolog - Encephalitozoon| cuniculi Length = 80 Score = 68.6 bits (166), Expect = 2e-11 Identities = 27/60 (45%), Positives = 39/60 (65%) Frame = +3 Query: 153 KLDTVFSCPFCNHGSSVECRIDMKNLIGEANCRICQESFSTTINALTEPIDIYSEWIDEC 332 +L+ F+CP CNH + V+C + + G ANC +C+ SF+ N LT ID+YS W+DEC Sbjct: 18 RLEKRFNCPVCNHENVVQCTVKKTLMKGFANCSVCEASFACDANKLTTGIDVYSAWVDEC 77
>Q46LU1:GLGA_PROMT Glycogen synthase - Prochlorococcus marinus (strain NATL2A)| Length = 487 Score = 32.0 bits (71), Expect = 2.5 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -3 Query: 317 FAVYINRLSQRIYGGAEAFLADSTIRLTNQILHINSAFNAAPMVAERAG-KDRVELVHPL 141 F Y + LS+ IYGGA+AFL S + + A P+V + G D VE +P+ Sbjct: 333 FLTYDDALSRLIYGGADAFLMPSRFEPCGISQLLAMRYGAIPIVRKVGGLVDTVEPYNPM 392 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 116,083,099 Number of extensions: 2354714 Number of successful extensions: 6456 Number of sequences better than 10.0: 11 Number of HSP's gapped: 6454 Number of HSP's successfully gapped: 11 Length of query: 245 Length of database: 100,686,439 Length adjustment: 110 Effective length of query: 135 Effective length of database: 70,513,989 Effective search space: 9519388515 Effective search space used: 9519388515 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
