ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf33l12 |
|---|---|
| Clone Library Name | barley_pub |
>Q921Y2:IMP3_MOUSE U3 small nucleolar ribonucleoprotein protein IMP3 - Mus musculus| (Mouse) Length = 184 Score = 204 bits (519), Expect = 4e-52 Identities = 95/181 (52%), Positives = 135/181 (74%), Gaps = 1/181 (0%) Frame = +3 Query: 174 MMRKLKFHERKLLKKTNFLLWK-REGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVN 350 M+RKLKFHE+KLLK+ +FL W+ + E V +RY L R++Y +YN + ++L Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELAR 60 Query: 351 IIKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKF 530 ++ + RDPFR+ + LLDKLY MG++PT+ SL C+ +S S+F RRRL T+++KL+ Sbjct: 61 RLRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRM 120 Query: 531 AEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKKKIMEYNGALDDY 710 A+HL+ A+ ++EQGHVRVGP+ VTDPAFLVTR+MEDF+TWVDSSKIK+ ++EYN DD+ Sbjct: 121 AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 180 Query: 711 D 713 D Sbjct: 181 D 181
>P32899:IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3 - Saccharomyces| cerevisiae (Baker's yeast) Length = 183 Score = 201 bits (512), Expect = 3e-51 Identities = 96/181 (53%), Positives = 132/181 (72%), Gaps = 1/181 (0%) Frame = +3 Query: 174 MMRKLKFHERKLLKKTNFLLWKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNI 353 M+RKLK HE+KLLKK +FL WK++ GHR+ V + Y + +R+DY KYN IC ++L N Sbjct: 1 MVRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANK 60 Query: 354 IKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCE-RLSVSAFARRRLATIMVKLKF 530 + + P DPFR + +LLDKLY MGV+ TK + E +++VSA RRRL IM +LK Sbjct: 61 LSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKM 120 Query: 531 AEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKKKIMEYNGALDDY 710 AE +++A+ +IEQGHVRVGP + DPA+LVTRNMED++TWVD+SKIKK ++ Y +DD+ Sbjct: 121 AETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDF 180 Query: 711 D 713 D Sbjct: 181 D 181
>Q3T0M3:IMP3_BOVIN U3 small nucleolar ribonucleoprotein protein IMP3 - Bos taurus| (Bovine) Length = 184 Score = 201 bits (510), Expect = 5e-51 Identities = 93/181 (51%), Positives = 134/181 (74%), Gaps = 1/181 (0%) Frame = +3 Query: 174 MMRKLKFHERKLLKKTNFLLWK-REGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVN 350 M+RKLKFHE+KLLK+ +FL W+ + E V +RY L R+DY +YN + ++L Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60 Query: 351 IIKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKF 530 ++ + RDPFR+ + LLDKLY +G++PT+ S C+ ++ S+F RRRL T+++KL+ Sbjct: 61 RLRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRM 120 Query: 531 AEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKKKIMEYNGALDDY 710 A+HL+ A+ ++EQGHVRVGP+ VTDPAFLVTR+MEDF+TWVDSSKIK+ ++EYN DD+ Sbjct: 121 AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 180 Query: 711 D 713 D Sbjct: 181 D 181
>Q9NV31:IMP3_HUMAN U3 small nucleolar ribonucleoprotein protein IMP3 - Homo sapiens| (Human) Length = 184 Score = 200 bits (508), Expect = 8e-51 Identities = 93/181 (51%), Positives = 134/181 (74%), Gaps = 1/181 (0%) Frame = +3 Query: 174 MMRKLKFHERKLLKKTNFLLWK-REGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVN 350 M+RKLKFHE+KLLK+ +FL W+ + E V +RY L R+DY +YN + ++L Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60 Query: 351 IIKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKF 530 ++ + RD FR+ + LLDKLY +G++PT+ SL C+ ++ S+F RRRL T+++KL+ Sbjct: 61 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 120 Query: 531 AEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKKKIMEYNGALDDY 710 A+HL+ A+ ++EQGHVRVGP+ VTDPAFLVTR+MEDF+TWVDSSKIK+ ++EYN DD+ Sbjct: 121 AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 180 Query: 711 D 713 D Sbjct: 181 D 181
>O13835:IMP3_SCHPO U3 small nucleolar ribonucleoprotein protein imp3 -| Schizosaccharomyces pombe (Fission yeast) Length = 183 Score = 187 bits (476), Expect = 4e-47 Identities = 90/183 (49%), Positives = 131/183 (71%), Gaps = 2/183 (1%) Frame = +3 Query: 177 MRKLKFHERKLLKKTNFLLWKRE-GGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNI 353 MR LK HE+KLL+K +FL +K + HR+ V +RY + R++Y+KYN IC ++L + Sbjct: 1 MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHR 60 Query: 354 IKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCE-RLSVSAFARRRLATIMVKLKF 530 + +DP DPFR++ +LL+KL++MG++P+K + E + +VSA RRRL IM KL+ Sbjct: 61 LSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRM 120 Query: 531 AEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKKKIMEYNGALDDY 710 ++ + EA IEQGHVRVGP +TDPA+LVTR++EDF+TW D+SKIK+ I +YN LDDY Sbjct: 121 SQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDY 180 Query: 711 DAM 719 D + Sbjct: 181 DLL 183
>O01513:YS4L_CAEEL Putative 40S ribosomal protein S4-like - Caenorhabditis elegans| Length = 183 Score = 164 bits (416), Expect = 4e-40 Identities = 77/182 (42%), Positives = 121/182 (66%) Frame = +3 Query: 174 MMRKLKFHERKLLKKTNFLLWKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNI 353 M+RKLK HE+KLLKKT+F+ W+ + ++ + +++ + R+ Y YN + S+++ ++ Sbjct: 1 MVRKLKTHEQKLLKKTDFMSWQVDQQGKQGDMLRKFYVKKREHYALYNTLAAKSREVADL 60 Query: 354 IKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFA 533 IK + DPFR + T +L K Y G++PT +L + +++ ++FARRRL +M + Sbjct: 61 IKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGKVTGASFARRRLPVVMRNIGMC 120 Query: 534 EHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKKKIMEYNGALDDYD 713 E +K A +EQGHVR+G + VTDPAF+VTR+ ED ITW +SKIKK +M+YN DD+D Sbjct: 121 ESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASKIKKHVMDYNNTRDDFD 180 Query: 714 AM 719 M Sbjct: 181 LM 182
>Q01688:YS4L_PNECA Putative 40S ribosomal protein S4-like - Pneumocystis carinii| Length = 169 Score = 160 bits (405), Expect = 7e-39 Identities = 81/168 (48%), Positives = 114/168 (67%), Gaps = 2/168 (1%) Frame = +3 Query: 177 MRKLKFHERKLLKKTNFLLWKRE-GGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNI 353 MRKLK+HE+KLL K +FL +K++ HR+ V +RY + R+DY KYN + + + N Sbjct: 1 MRKLKYHEKKLLTKHDFLNYKKDDNNHRDVNVIRRYHIPQREDYFKYNQLVGLLLGIANK 60 Query: 354 IKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCE-RLSVSAFARRRLATIMVKLKF 530 + ++P D F MLL KL++M ++ + L E +L+VSAF RRRL +M +LK Sbjct: 61 LSLLEPTDSFGNLHKKMLLGKLFDMALLTSTPKLSDVENKLTVSAFCRRRLPVVMCRLKM 120 Query: 531 AEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKK 674 E + ++ Y+E GHVRVGPE +TDPAF VTRNMEDF+TWVDSSKI++ Sbjct: 121 CETVSTSVKYVEHGHVRVGPEVITDPAFFVTRNMEDFVTWVDSSKIRR 168
>Q6KZP7:RS4_PICTO 30S ribosomal protein S4P - Picrophilus torridus| Length = 183 Score = 60.5 bits (145), Expect = 1e-08 Identities = 31/96 (32%), Positives = 54/96 (56%) Frame = +3 Query: 375 DPFRIEMTGMLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAI 554 DP I+ +L+ KL + ++ +L L++ RRL T++ K A +K+A Sbjct: 66 DPLAIKQFQLLIGKLSRLNLLGENATLDDVLSLNIEDILERRLETLVYKKNLALTMKQAR 125 Query: 555 TYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSS 662 +I GH++V VT P+F+V ++MED IT+ ++S Sbjct: 126 QFITHGHIKVNDRVVTIPSFMVEKSMEDSITYNETS 161
>O28000:RS4_ARCFU 30S ribosomal protein S4P - Archaeoglobus fulgidus| Length = 172 Score = 60.5 bits (145), Expect = 1e-08 Identities = 31/90 (34%), Positives = 51/90 (56%) Frame = +3 Query: 405 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 584 ++ KL MG++P +L LSV F RRL T++ + A +K+A +I GH+ V Sbjct: 79 VIKKLNKMGILPENATLDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAV 138 Query: 585 GPETVTDPAFLVTRNMEDFITWVDSSKIKK 674 VT P+F+VT+ +E I++ +S + K Sbjct: 139 DGRRVTSPSFIVTKELESKISFYRNSPLAK 168
>Q0W1V5:RS4_UNCMA 30S ribosomal protein S4P - Uncultured methanogenic archaeon RC-I| Length = 205 Score = 57.8 bits (138), Expect = 7e-08 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 9/159 (5%) Frame = +3 Query: 234 WKREGGHREAAVTQRYSLVDR-------DDYKKYNGICLMSQKLVNIIKQMD-PRDPFRI 389 W++ E ++ ++Y L ++ D +KY ++ L+ ++ + P D I Sbjct: 18 WQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRS---NARALLGVMSAGNLPEDSHYI 74 Query: 390 EMTGMLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQ 569 ++ KL +G++ L L V RRL TI+ + FA +K+A +I Sbjct: 75 RDAQNIVKKLQTLGILKEDAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVH 134 Query: 570 GHVRVGPETVTDPAFLVTRNMEDFITWVDSSKI-KKKIM 683 GH+ + +T P +LV ++ ED +++ S I K+K+M Sbjct: 135 GHISLNGRKITVPGYLVLKSEEDMLSYYVGSPITKEKLM 173
>A1RWT8:RS4_THEPD 30S ribosomal protein S4P - Thermofilum pendens (strain Hrk 5)| Length = 172 Score = 57.8 bits (138), Expect = 7e-08 Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 1/98 (1%) Frame = +3 Query: 384 RIEMTGMLLDKLYNMGVIPTKK-SLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITY 560 RI++ L+ +LY MG++P++ SL L+V RRL TI+ + A ++ A Sbjct: 66 RIKLEKPLVSRLYKMGLLPSEDASLDDVLSLTVRDVLERRLQTIVYRKGLATTIRHARQL 125 Query: 561 IEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKK 674 I GH+ V V P +LV+R+ E+FI++ + S + K Sbjct: 126 ITHGHIAVNSRRVRSPGYLVSRDEENFISYYEGSPLAK 163
>A3DMQ4:RS4_STAMF 30S ribosomal protein S4P - Staphylothermus marinus (strain ATCC| 43588 / DSM 3639 / F1) Length = 168 Score = 57.8 bits (138), Expect = 7e-08 Identities = 31/94 (32%), Positives = 48/94 (51%) Frame = +3 Query: 405 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 584 LL++LY +G++ SL L+V RRL TI+ K A + A I GH+ + Sbjct: 73 LLNRLYRLGLLHENASLEDVLGLTVEDLLERRLQTIVYKKGLARTIYHARQLIIHGHIAI 132 Query: 585 GPETVTDPAFLVTRNMEDFITWVDSSKIKKKIME 686 +T P ++V+R ED + + +S KK I E Sbjct: 133 AGRRITSPGYIVSREEEDLVDYAPTSPFKKSIEE 166
>A2BK77:RS4_HYPBU 30S ribosomal protein S4P - Hyperthermus butylicus (strain DSM 5456| / JCM 9403) Length = 176 Score = 57.8 bits (138), Expect = 7e-08 Identities = 39/151 (25%), Positives = 67/151 (44%) Frame = +3 Query: 234 WKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLD 413 W +E RE + RY L ++ + K + + + + P R + LL Sbjct: 18 WIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPPE--VREKEEKALLA 75 Query: 414 KLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPE 593 +L +GV+P +L L+ F RRL TI+ K A + EA I GH+ + Sbjct: 76 RLNELGVLPENATLDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGR 135 Query: 594 TVTDPAFLVTRNMEDFITWVDSSKIKKKIME 686 + P +LV ++ ED + + +S K+ +E Sbjct: 136 KIRSPGYLVKKDEEDLVDYAPTSPYAKRRLE 166
>Q5JJF2:RS4_PYRKO 30S ribosomal protein S4P - Pyrococcus kodakaraensis (Thermococcus| kodakaraensis) Length = 180 Score = 57.4 bits (137), Expect = 9e-08 Identities = 31/91 (34%), Positives = 46/91 (50%) Frame = +3 Query: 405 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 584 LL +LY +G++P L L+V RRL TI+ + A +K+A I GH+ V Sbjct: 73 LLQRLYRLGLLPADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLIVHGHIEV 132 Query: 585 GPETVTDPAFLVTRNMEDFITWVDSSKIKKK 677 + + P +LV R ED IT+ S K+ Sbjct: 133 NGQVIRSPGYLVLREEEDTITYAKGSPFAKE 163
>Q9YB58:RS4_AERPE 30S ribosomal protein S4P - Aeropyrum pernix| Length = 171 Score = 55.1 bits (131), Expect = 4e-07 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 2/153 (1%) Frame = +3 Query: 234 WKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLD 413 W +E RE + RY L ++ + K + + + + P R E + +L++ Sbjct: 18 WIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPE--VRREASRVLVE 75 Query: 414 KLYNMGVIPTKKSLVKCERLSVSA--FARRRLATIMVKLKFAEHLKEAITYIEQGHVRVG 587 LY MG+I + E L ++A RRL TI+ K A+ + +A + GH+ + Sbjct: 76 SLYRMGLIDNPNVDID-EVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIA 134 Query: 588 PETVTDPAFLVTRNMEDFITWVDSSKIKKKIME 686 VT P +LV+R E I + S K++ E Sbjct: 135 GRRVTSPGYLVSREEEKLIDYAPGSPFKERAEE 167
>O15612:RS9_ENTHI 40S ribosomal protein S9 - Entamoeba histolytica| Length = 185 Score = 54.7 bits (130), Expect = 6e-07 Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 1/175 (0%) Frame = +3 Query: 174 MMRKLKFHERKLLKKTNFLLWKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNI 353 M R L+ H + KT + ++RE E + ++ L ++ + ++ + + + + + Sbjct: 1 MGRCLRNHS--ITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKV 58 Query: 354 IKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCE-RLSVSAFARRRLATIMVKLKF 530 + D +DP R+ LL +L+N+G++P ++ ++ L RRL T++ + F Sbjct: 59 MLMKDAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGF 118 Query: 531 AEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKKKIMEYNG 695 A+ + A I ++VG + V P+FLV E I D++ + E NG Sbjct: 119 AKSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNP--EING 171
>A1RT03:RS4_PYRIL 30S ribosomal protein S4P - Pyrobaculum islandicum (strain DSM 4184| / JCM 9189) Length = 159 Score = 54.3 bits (129), Expect = 7e-07 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 1/161 (0%) Frame = +3 Query: 177 MRKLKFHERKLLKKTNFLLWKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNII 356 M LK ++K L+ +W ++ E + Y L ++ + + + Sbjct: 1 MGGLKKPKKKYLEGKPKKIWNKQLLLEELQLVGEYGLRNKKELWLARAHLKWIVRRARSL 60 Query: 357 KQMDPRDPFRIEMTGMLLDKLYNMGVIPTKK-SLVKCERLSVSAFARRRLATIMVKLKFA 533 M P + +E+ +KLY MG I L + L V A RRL TI+ + A Sbjct: 61 LSMTPEERAPLELP--FKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLA 118 Query: 534 EHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVD 656 + + A + GHV V VT P FLV R++ED IT ++ Sbjct: 119 KSIYHARQLVVHGHVAVAGRRVTSPGFLVPRDLEDKITLIE 159
>P14132:RS9_DICDI 40S ribosomal protein S9 - Dictyostelium discoideum (Slime mold)| Length = 185 Score = 53.1 bits (126), Expect = 2e-06 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 1/130 (0%) Frame = +3 Query: 234 WKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLD 413 +++E E V + L ++++ + +K + +D +DP RI LL Sbjct: 16 FEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKRIFEGSALLR 75 Query: 414 KLYNMGVIP-TKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGP 590 +L+ +GV+ +K L L V F RRL T++ K A+ + A I+ H+RVG Sbjct: 76 RLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGK 135 Query: 591 ETVTDPAFLV 620 + V P+FLV Sbjct: 136 QLVNVPSFLV 145
>Q96YV8:RS4_SULTO 30S ribosomal protein S4P - Sulfolobus tokodaii| Length = 177 Score = 52.0 bits (123), Expect = 4e-06 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Frame = +3 Query: 405 LLDKLYNMGVIPTKKS-LVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVR 581 L+ KLY MG+I + L L+ + RRL TI+ K A + +A I GH+ Sbjct: 73 LIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIA 132 Query: 582 VGPETVTDPAFLVTRNMEDFITWVDSSKIKK 674 +G VT P ++V R ED I + +S K+ Sbjct: 133 IGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQ 163
>Q8ZTV1:RS4_PYRAE 30S ribosomal protein S4P - Pyrobaculum aerophilum| Length = 159 Score = 52.0 bits (123), Expect = 4e-06 Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Frame = +3 Query: 411 DKLYNMGVIPTKK-SLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVG 587 +KLY MG I L + L V A RRL TI+ ++ A+ + A I GHV V Sbjct: 77 EKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVA 136 Query: 588 PETVTDPAFLVTRNMEDFITWV 653 VT P FLV R +ED I+ + Sbjct: 137 GRRVTSPGFLVPRELEDKISLI 158
>O59306:RS4_PYRHO 30S ribosomal protein S4P - Pyrococcus horikoshii| Length = 180 Score = 51.2 bits (121), Expect = 6e-06 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 1/144 (0%) Frame = +3 Query: 234 WKREGGHREAAVTQRYSLVDRDD-YKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLL 410 W +E RE + +Y L ++ + +K + ++ ++ + E LL Sbjct: 18 WIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAEIEREQ---LL 74 Query: 411 DKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGP 590 +L +G++P L L+V RRL TI+ K A +++A I GH+ V Sbjct: 75 SRLKRLGLLPEDAVLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNG 134 Query: 591 ETVTDPAFLVTRNMEDFITWVDSS 662 + + P++LV + ED IT+ +S Sbjct: 135 QIIRSPSYLVLKEEEDKITYARTS 158
>A3MUS9:RS4_PYRCJ 30S ribosomal protein S4P - Pyrobaculum calidifontis (strain JCM| 11548 / VA1) Length = 159 Score = 51.2 bits (121), Expect = 6e-06 Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Frame = +3 Query: 411 DKLYNMGVIPTKK-SLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVG 587 +KLY MG I L + L V A RRL T++ ++ A+ + A + GHV V Sbjct: 77 EKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVA 136 Query: 588 PETVTDPAFLVTRNMEDFIT 647 VT P FLV R +ED IT Sbjct: 137 GRRVTSPGFLVPRELEDKIT 156
>P05755:RS9B_YEAST 40S ribosomal protein S9-B - Saccharomyces cerevisiae (Baker's| yeast) Length = 195 Score = 50.8 bits (120), Expect = 8e-06 Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 1/100 (1%) Frame = +3 Query: 366 DPRDPFRIEMTGMLLDKLYNMGVIPT-KKSLVKCERLSVSAFARRRLATIMVKLKFAEHL 542 D +DP R+ L+ +L +GV+ KK L L V F RRL T + KL A+ + Sbjct: 63 DEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSV 122 Query: 543 KEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSS 662 A I Q H+ VG + V P+F+V + E I + +S Sbjct: 123 HHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTS 162
>O13516:RS9A_YEAST 40S ribosomal protein S9-A - Saccharomyces cerevisiae (Baker's| yeast) Length = 197 Score = 50.8 bits (120), Expect = 8e-06 Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 1/100 (1%) Frame = +3 Query: 366 DPRDPFRIEMTGMLLDKLYNMGVIPT-KKSLVKCERLSVSAFARRRLATIMVKLKFAEHL 542 D +DP R+ L+ +L +GV+ KK L L V F RRL T + KL A+ + Sbjct: 63 DEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSV 122 Query: 543 KEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSS 662 A I Q H+ VG + V P+F+V + E I + +S Sbjct: 123 HHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTS 162
>P39467:RS4_SULAC 30S ribosomal protein S4P - Sulfolobus acidocaldarius| Length = 176 Score = 50.8 bits (120), Expect = 8e-06 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = +3 Query: 405 LLDKLYNMGVIPTKKS-LVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVR 581 L+ KLY MG++ S L L+ + RRL TI+ K A + +A I GH+ Sbjct: 73 LIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIA 132 Query: 582 VGPETVTDPAFLVTRNMEDFITWVDSSKIKK 674 + VT P ++V R ED I + +S K+ Sbjct: 133 ISGRKVTSPGYVVLRGEEDLIDYYPTSPFKQ 163
>Q74NF7:RS4_NANEQ 30S ribosomal protein S4P - Nanoarchaeum equitans| Length = 180 Score = 50.8 bits (120), Expect = 8e-06 Identities = 30/87 (34%), Positives = 46/87 (52%) Frame = +3 Query: 408 LDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVG 587 L KL +GV+ L L+V RRL T++V+ A+ +K+A +I GH+ V Sbjct: 73 LTKLKKLGVLSENAELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVN 132 Query: 588 PETVTDPAFLVTRNMEDFITWVDSSKI 668 E V P++LV + ED I +V S + Sbjct: 133 GEVVDAPSYLVKKEEEDKIEFVPFSPL 159
>P61993:RS4_PYRFU 30S ribosomal protein S4P - Pyrococcus furiosus| Length = 180 Score = 50.4 bits (119), Expect = 1e-05 Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 1/144 (0%) Frame = +3 Query: 234 WKREGGHREAAVTQRYSLVDRDD-YKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLL 410 W +E RE + +Y L ++ + +K + ++ ++ + E LL Sbjct: 18 WIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAEIEREQ---LL 74 Query: 411 DKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGP 590 +L +G++P L L++ RRL TI+ K A +++A I GH+ V Sbjct: 75 ARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNG 134 Query: 591 ETVTDPAFLVTRNMEDFITWVDSS 662 + + P++LV + ED IT+ +S Sbjct: 135 QIIRSPSYLVLKEEEDTITYARTS 158
>P61992:RS4_PYRAB 30S ribosomal protein S4P - Pyrococcus abyssi| Length = 180 Score = 50.4 bits (119), Expect = 1e-05 Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 1/144 (0%) Frame = +3 Query: 234 WKREGGHREAAVTQRYSLVDRDD-YKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLL 410 W +E RE + +Y L ++ + +K + ++ ++ + E LL Sbjct: 18 WIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAEIEREQ---LL 74 Query: 411 DKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGP 590 +L +G++P L L++ RRL TI+ K A +++A I GH+ V Sbjct: 75 ARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNG 134 Query: 591 ETVTDPAFLVTRNMEDFITWVDSS 662 + + P++LV + ED IT+ +S Sbjct: 135 QIIRSPSYLVLKEEEDTITYARTS 158
>P52810:RS9_PODAN 40S ribosomal protein S9 - Podospora anserina| Length = 190 Score = 49.7 bits (117), Expect = 2e-05 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 1/101 (0%) Frame = +3 Query: 363 MDPRDPFRIEMTGMLLDKLYNMGVIP-TKKSLVKCERLSVSAFARRRLATIMVKLKFAEH 539 +D +DP R+ L+ +L +GV+ ++ L L F RRL T++ KL A+ Sbjct: 60 LDEKDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKS 119 Query: 540 LKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSS 662 + A I Q H+RVG + V P+F+V + + I + +S Sbjct: 120 IHHARVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTS 160
>Q09757:RS9A_SCHPO 40S ribosomal protein S9-A - Schizosaccharomyces pombe (Fission| yeast) Length = 191 Score = 49.3 bits (116), Expect = 2e-05 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 1/101 (0%) Frame = +3 Query: 363 MDPRDPFRIEMTGMLLDKLYNMGVIP-TKKSLVKCERLSVSAFARRRLATIMVKLKFAEH 539 +D +DP R+ ++ +L +G++ T+ L L + F RRL T + KL A+ Sbjct: 62 LDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKS 121 Query: 540 LKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSS 662 + A I Q H+RVG + V P+F+V + + I + SS Sbjct: 122 IHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSS 162
>A4WM27:RS4_PYRAR 30S ribosomal protein S4P - Pyrobaculum arsenaticum (strain DSM| 13514 / JCM 11321) Length = 159 Score = 49.3 bits (116), Expect = 2e-05 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Frame = +3 Query: 411 DKLYNMGVIPTKK-SLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVG 587 +KLY G I L + L V A RRL TI+ ++ A+ + A I GH+ + Sbjct: 77 EKLYKAGFIEDPNVPLDRILSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAIE 136 Query: 588 PETVTDPAFLVTRNMEDFITWV 653 VT P FLV R +ED IT V Sbjct: 137 GRRVTSPGFLVPRELEDKITLV 158
>Q20228:RS9_CAEEL 40S ribosomal protein S9 - Caenorhabditis elegans| Length = 189 Score = 48.5 bits (114), Expect = 4e-05 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 1/157 (0%) Frame = +3 Query: 177 MRKLKFHERKLLKKTNFLLWKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNII 356 M +LK + K+ K +++E +E + + L ++ + + +K + Sbjct: 1 MARLKTVQSKVTKSPR-RPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAAREL 59 Query: 357 KQMDPRDPFRIEMTGMLLDKLYNMGVIP-TKKSLVKCERLSVSAFARRRLATIMVKLKFA 533 ++ +DP R+ LL +L +GV+ TK L L V F RRL T + KL A Sbjct: 60 LTLEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLA 119 Query: 534 EHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFI 644 + + A I+Q H+RV + V P+F+V + + I Sbjct: 120 KSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHI 156
>O26142:RS4_METTH 30S ribosomal protein S4P - Methanobacterium thermoautotrophicum| Length = 171 Score = 48.1 bits (113), Expect = 5e-05 Identities = 46/168 (27%), Positives = 70/168 (41%), Gaps = 6/168 (3%) Frame = +3 Query: 195 HERKLLKK--TNFLLWKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMD 368 H RK KK T W E E + +Y L ++ + K + ++ + M Sbjct: 3 HPRKARKKYDTPPHPWNAERIKEENRLVAKYGLKNKKEVWKAETMVRRYRRDARYLLGMA 62 Query: 369 PRDPFRIEMTG----MLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAE 536 E TG LL L G++ L L+V RRRL T++ K A Sbjct: 63 S------EHTGKEREQLLGHLVRTGILNEGAKLEDVLDLTVEDVLRRRLQTLVHKRGLAR 116 Query: 537 HLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKKKI 680 +KEA + GH+ + + P ++V R ED I + SS +KK+I Sbjct: 117 TVKEARQMVIHGHIALDGRKIDAPGYIVKRGEEDKIGFYPSSPMKKQI 164
>Q2NFZ4:RS4_METST 30S ribosomal protein S4P - Methanosphaera stadtmanae (strain DSM| 3091) Length = 182 Score = 48.1 bits (113), Expect = 5e-05 Identities = 36/148 (24%), Positives = 63/148 (42%) Frame = +3 Query: 234 WKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLD 413 W + E + +Y L ++ + K ++ II MD + R + LLD Sbjct: 18 WNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKELLD 75 Query: 414 KLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPE 593 L G I L + L+V RRRL +++ K + KEA ++ GH+ + + Sbjct: 76 HLVRAGFISPNAKLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGK 135 Query: 594 TVTDPAFLVTRNMEDFITWVDSSKIKKK 677 + P LV + E+ I + S + K+ Sbjct: 136 KINAPGHLVEKADEENIDFYPGSSVAKQ 163
>P29314:RS9_RAT 40S ribosomal protein S9 - Rattus norvegicus (Rat)| Length = 194 Score = 47.8 bits (112), Expect = 7e-05 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Frame = +3 Query: 255 REAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGV 434 +E + Y L ++ + + +K + +D +DP R+ LL +L +GV Sbjct: 27 QELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGV 86 Query: 435 IPT-KKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPA 611 + K L L + F RRL T + KL A+ + A I Q H+RV + V P+ Sbjct: 87 LDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPS 146 Query: 612 FLVTRNMEDFI 644 F+V + + I Sbjct: 147 FIVRLDSQKHI 157
>Q6ZWN5:RS9_MOUSE 40S ribosomal protein S9 - Mus musculus (Mouse)| Length = 194 Score = 47.8 bits (112), Expect = 7e-05 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Frame = +3 Query: 255 REAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGV 434 +E + Y L ++ + + +K + +D +DP R+ LL +L +GV Sbjct: 27 QELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGV 86 Query: 435 IPT-KKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPA 611 + K L L + F RRL T + KL A+ + A I Q H+RV + V P+ Sbjct: 87 LDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPS 146 Query: 612 FLVTRNMEDFI 644 F+V + + I Sbjct: 147 FIVRLDSQKHI 157
>P46781:RS9_HUMAN 40S ribosomal protein S9 - Homo sapiens (Human)| Length = 194 Score = 47.8 bits (112), Expect = 7e-05 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Frame = +3 Query: 255 REAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGV 434 +E + Y L ++ + + +K + +D +DP R+ LL +L +GV Sbjct: 27 QELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGV 86 Query: 435 IPT-KKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPA 611 + K L L + F RRL T + KL A+ + A I Q H+RV + V P+ Sbjct: 87 LDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPS 146 Query: 612 FLVTRNMEDFI 644 F+V + + I Sbjct: 147 FIVRLDSQKHI 157
>O59675:RS9B_SCHPO 40S ribosomal protein S9-B - Schizosaccharomyces pombe (Fission| yeast) Length = 192 Score = 47.8 bits (112), Expect = 7e-05 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%) Frame = +3 Query: 363 MDPRDPFRIEMTGMLLDKLYNMGVIP-TKKSLVKCERLSVSAFARRRLATIMVKLKFAEH 539 +D +DP R+ ++ +L +G++ ++ L L + F RRL T + KL A+ Sbjct: 62 LDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKS 121 Query: 540 LKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSS 662 + A I Q H+RVG + V P+F+V + + I + SS Sbjct: 122 IHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSS 162
>Q97B95:RS4_THEVO 30S ribosomal protein S4P - Thermoplasma volcanium| Length = 200 Score = 47.4 bits (111), Expect = 9e-05 Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 1/172 (0%) Frame = +3 Query: 189 KFHERKLLKKTNFLLWKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIK-QM 365 KFH +K T W+++ E + +Y L ++ + + + + ++ ++ Sbjct: 5 KFHHKKY--STPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARL 62 Query: 366 DPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLK 545 D + ++ +L ++ K +L L+V RRL TI+ K A K Sbjct: 63 RASDANAQKQLERMIKRLSRYKILSDKATLDDVLSLTVENILDRRLQTIVFKKNLALSEK 122 Query: 546 EAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKKKIMEYNGAL 701 +A I GH+ V VT P LV ED I + ++S I ++ AL Sbjct: 123 QARQLITHGHITVNGRRVTVPGMLVEAQYEDTIAYYENSPIANELHPIRQAL 174
>Q6LXN0:RS4_METMP 30S ribosomal protein S4P - Methanococcus maripaludis| Length = 178 Score = 47.4 bits (111), Expect = 9e-05 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 5/148 (3%) Frame = +3 Query: 234 WKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLD 413 W E +E ++Q+Y LV++ + K M +L N +Q G Sbjct: 18 WIGERIQKEKEISQKYGLVNKKELWK------METQLRNYRRQARKLISDTTTQGGKEAV 71 Query: 414 KLYNMG-----VIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHV 578 +L+N+ +I + +L L++ + RRL TI+ + A+ K+A +I GH+ Sbjct: 72 QLFNVLKRYAILIEEEPTLDHVLSLNIESILERRLQTIVFRKGLAKTPKQARQFIVHGHI 131 Query: 579 RVGPETVTDPAFLVTRNMEDFITWVDSS 662 V + VT PA+L++ D I +V +S Sbjct: 132 AVNGKRVTAPAYLISVAENDAIEYVSNS 159
>Q9FLF0:RS92_ARATH 40S ribosomal protein S9-2 - Arabidopsis thaliana (Mouse-ear cress)| Length = 197 Score = 46.6 bits (109), Expect = 2e-04 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Frame = +3 Query: 363 MDPRDPFRIEMTGMLLDKLYNMGVIP-TKKSLVKCERLSVSAFARRRLATIMVKLKFAEH 539 +D ++P RI LL ++ G++ T+ L L+V F RRL TI+ K A+ Sbjct: 64 LDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKS 123 Query: 540 LKEAITYIEQGHVRVGPETVTDPAFLV 620 + A I Q H+RVG + V P+F+V Sbjct: 124 IHHARVLIRQRHIRVGRQLVNIPSFMV 150
>Q25555:RS9_NAEFO 40S ribosomal protein S9 - Naegleria fowleri| Length = 186 Score = 46.2 bits (108), Expect = 2e-04 Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 2/139 (1%) Frame = +3 Query: 234 WKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGM-LL 410 +++E RE + +Y L ++ + + ++K + + P D + + G LL Sbjct: 21 FEKERMDRELKMCGKYGLKNKQEIWRLQYYLARARKTARHLLTL-PEDDMKRQFEGAALL 79 Query: 411 DKLYNMGVIP-TKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVG 587 ++ +G++ +K+ L L RRL T++ KL ++ + A I Q H+RVG Sbjct: 80 RRMTRLGLLDESKQQLDYILSLKTEDLLERRLQTVVQKLGLSKSIHHARQLIFQRHIRVG 139 Query: 588 PETVTDPAFLVTRNMEDFI 644 +TV P+F+V + E I Sbjct: 140 KQTVNVPSFIVRVDSEKHI 158
>A0B9L2:RS4_METTP 30S ribosomal protein S4P - Methanosaeta thermophila (strain DSM| 6194 / PT) (Methanothrix thermophila (strain DSM 6194 / PT)) Length = 183 Score = 46.2 bits (108), Expect = 2e-04 Identities = 31/149 (20%), Positives = 68/149 (45%), Gaps = 1/149 (0%) Frame = +3 Query: 234 WKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEM-TGMLL 410 W+ + E + + Y L ++ + K I +++ ++ R R ++ ++ Sbjct: 18 WEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVI 77 Query: 411 DKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGP 590 ++L G++ L L ++ RRL T + + A +++A +I GH++V Sbjct: 78 NRLSRFGILKDGADLDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAG 137 Query: 591 ETVTDPAFLVTRNMEDFITWVDSSKIKKK 677 + VT P++LV R E I + S + ++ Sbjct: 138 QRVTVPSYLVKRGDEMTIDYYAGSPLARE 166
>P55935:RS9_DROME 40S ribosomal protein S9 - Drosophila melanogaster (Fruit fly)| Length = 195 Score = 45.4 bits (106), Expect = 3e-04 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Frame = +3 Query: 255 REAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGV 434 +E + Y L ++ + + +K + +D +D R+ LL +L +GV Sbjct: 28 QELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGV 87 Query: 435 IP-TKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPA 611 + ++ L L + F RRL T + KL A+ + A I Q H+RV + V P+ Sbjct: 88 LDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPS 147 Query: 612 FLVTRNMEDFI 644 F+V + + I Sbjct: 148 FVVRLDSQKHI 158
>Q9LXG1:RS91_ARATH 40S ribosomal protein S9-1 - Arabidopsis thaliana (Mouse-ear cress)| Length = 198 Score = 44.7 bits (104), Expect = 6e-04 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 1/101 (0%) Frame = +3 Query: 363 MDPRDPFRIEMTGMLLDKLYNMGVIP-TKKSLVKCERLSVSAFARRRLATIMVKLKFAEH 539 +D + P RI LL ++ G++ ++ L L+V F RRL TI+ K A+ Sbjct: 64 LDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKS 123 Query: 540 LKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSS 662 + + I Q H+RVG + V P+F+V + + I + +S Sbjct: 124 IHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTS 164
>Q12ZR5:RS4_METBU 30S ribosomal protein S4P - Methanococcoides burtonii (strain DSM| 6242) Length = 184 Score = 44.3 bits (103), Expect = 8e-04 Identities = 25/91 (27%), Positives = 44/91 (48%) Frame = +3 Query: 405 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 584 LL KL ++ + ++ L A RRL T + +L A ++A +I GH+ + Sbjct: 78 LLTKLIRFSILKSDSNIDDVLGLQTEAILERRLQTQVHRLGLARTARQARQFITHGHIAI 137 Query: 585 GPETVTDPAFLVTRNMEDFITWVDSSKIKKK 677 + VT P +VTR E + + +S + K+ Sbjct: 138 DGKRVTVPGMMVTREQEMNVEYYGTSPMTKE 168
>Q9HJD7:RS4_THEAC 30S ribosomal protein S4P - Thermoplasma acidophilum| Length = 199 Score = 43.9 bits (102), Expect = 0.001 Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 1/172 (0%) Frame = +3 Query: 189 KFHERKLLKKTNFLLWKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIK-QM 365 KFH +K T W++E E + +Y L ++ + + + + ++ ++ Sbjct: 5 KFHHKKY--STPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRARL 62 Query: 366 DPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLK 545 D + ++ +L ++ +L L+V RRL TI+ + A ++ Sbjct: 63 RTNDVNAQKQLERMIKRLNRYKLLSENATLDDVLSLTVENILDRRLQTIVFRKNLAISVR 122 Query: 546 EAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKKKIMEYNGAL 701 +A I GH+ V VT P LV ED I + ++S + ++ AL Sbjct: 123 QARQLITHGHISVAGRRVTVPGMLVEAKDEDTIAYEENSPVANELHPIRQAL 174
>P17959:RS9_TRYBB Probable 40S ribosomal protein S9 - Trypanosoma brucei brucei| Length = 190 Score = 43.5 bits (101), Expect = 0.001 Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 1/144 (0%) Frame = +3 Query: 234 WKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLD 413 +++E RE + +Y L + + + N ++ ++ + P R+ ++ Sbjct: 18 FEKERLDREMKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPENHPRRLLEGSAIMR 77 Query: 414 KLYNMGVIPTKKS-LVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGP 590 + + G + K L L+V RRL T++ K A+ + + I+Q H+ V Sbjct: 78 RCHGYGFLDEDKDKLDYVLSLTVPDILERRLQTVVFKHGLAKSVHHSRVLIQQRHIAVAK 137 Query: 591 ETVTDPAFLVTRNMEDFITWVDSS 662 + VT P+F+V + E I + D+S Sbjct: 138 QIVTIPSFIVRVSSEHHIAFADAS 161
>A3CWH7:RS4_METMJ 30S ribosomal protein S4P - Methanoculleus marisnigri (strain ATCC| 35101 / DSM 1498 / JR1) Length = 182 Score = 42.0 bits (97), Expect = 0.004 Identities = 25/92 (27%), Positives = 44/92 (47%) Frame = +3 Query: 405 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 584 L++ LY G++ + L V RRL T++++ FA K+A +I GH+ + Sbjct: 78 LVNHLYRYGLVGENADVGDVLALKVEQQLDRRLQTLVLRRGFARSPKQARQFITHGHIAI 137 Query: 585 GPETVTDPAFLVTRNMEDFITWVDSSKIKKKI 680 VT P + V R E I++ S + ++ Sbjct: 138 KGRRVTIPGYRVERAEEAEISYYGPSPLTNEV 169
>Q8TRR1:RS4_METAC 30S ribosomal protein S4P - Methanosarcina acetivorans| Length = 218 Score = 41.6 bits (96), Expect = 0.005 Identities = 24/91 (26%), Positives = 43/91 (47%) Frame = +3 Query: 405 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 584 +L KL G+I + ++ L RRL T +++L A + +A +I GH+ + Sbjct: 81 ILSKLIRYGIIKSDANIDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAI 140 Query: 585 GPETVTDPAFLVTRNMEDFITWVDSSKIKKK 677 T P LV++ E I + +S +K + Sbjct: 141 NGRKATIPGMLVSKEDEMHIGYYGNSPLKNE 171
>Q2FT97:RS4_METHJ 30S ribosomal protein S4P - Methanospirillum hungatei (strain JF-1| / DSM 864) Length = 181 Score = 41.2 bits (95), Expect = 0.007 Identities = 25/92 (27%), Positives = 42/92 (45%) Frame = +3 Query: 405 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 584 L+ L G++ + L V RRL T + + FA K+A +I GH+ + Sbjct: 78 LIGSLQRSGMLSENADIDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAI 137 Query: 585 GPETVTDPAFLVTRNMEDFITWVDSSKIKKKI 680 G VT P + V+ ++ I++ SS + I Sbjct: 138 GGRRVTIPGYTVSAKEQEEISYAGSSPLVSDI 169
>P95987:RS4_SULSO 30S ribosomal protein S4P - Sulfolobus solfataricus| Length = 181 Score = 40.8 bits (94), Expect = 0.009 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Frame = +3 Query: 405 LLDKLYNMGVIPTKKSLVK-CERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVR 581 L+ KL MG++ + + V L+ RRL TI+ K + + +A I GH+ Sbjct: 73 LVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIA 132 Query: 582 VGPETVTDPAFLVTRNMEDFITWVDSSKIKKK 677 V + VT P ++V + E+ I + +S K + Sbjct: 133 VNGKRVTSPGYIVNVDEENLIDYYVTSSFKSR 164
>Q9HQJ6:RS4_HALSA 30S ribosomal protein S4P - Halobacterium salinarium (Halobacterium| halobium) Length = 170 Score = 40.8 bits (94), Expect = 0.009 Identities = 21/89 (23%), Positives = 47/89 (52%) Frame = +3 Query: 414 KLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPE 593 +L +G++ ++ L L V+ RRL T++ + A + +A ++ GHV V Sbjct: 73 RLQRIGILSEEERLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGS 132 Query: 594 TVTDPAFLVTRNMEDFITWVDSSKIKKKI 680 VT+P++ V + E+ + + ++S + ++ Sbjct: 133 RVTEPSYTVPVSEENTLAFDETSDLTDEL 161
>Q8PV18:RS4_METMA 30S ribosomal protein S4P - Methanosarcina mazei (Methanosarcina| frisia) Length = 219 Score = 39.7 bits (91), Expect = 0.019 Identities = 24/88 (27%), Positives = 40/88 (45%) Frame = +3 Query: 405 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 584 +L KL G+I ++ L RRL T +++L A + +A +I GH+ + Sbjct: 82 ILSKLIRYGIIKADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAI 141 Query: 585 GPETVTDPAFLVTRNMEDFITWVDSSKI 668 T P LV++ E I + SS + Sbjct: 142 NGRKATIPGMLVSKEDEMHIGYYGSSPL 169
>P54020:RS4_METJA 30S ribosomal protein S4P - Methanococcus jannaschii| Length = 187 Score = 39.7 bits (91), Expect = 0.019 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 1/144 (0%) Frame = +3 Query: 234 WKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLD 413 W +E RE + ++Y L + + K I ++ + + R + L + Sbjct: 19 WIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQAR--RLISDRTEQGAKEAVQLFN 76 Query: 414 KLYNMGVIPTKK-SLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGP 590 L G++ + +L L+V RRL T++ + A ++A I GH+ V Sbjct: 77 VLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNG 136 Query: 591 ETVTDPAFLVTRNMEDFITWVDSS 662 VT P+++VT ED I++ +S Sbjct: 137 RVVTAPSYMVTVEEEDKISYAKNS 160
>Q18G54:RS4_HALWD 30S ribosomal protein S4P - Haloquadratum walsbyi (strain DSM| 16790) Length = 175 Score = 39.7 bits (91), Expect = 0.019 Identities = 25/87 (28%), Positives = 41/87 (47%) Frame = +3 Query: 408 LDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVG 587 LD+L G++ + K L VS RRL TI+ + A K+A +I H+ V Sbjct: 76 LDRLRRYGILSADDDISKVLGLDVSDILERRLQTIVYRQGLASTPKQARQFIVHEHITVN 135 Query: 588 PETVTDPAFLVTRNMEDFITWVDSSKI 668 VT P+ +V + I + ++S + Sbjct: 136 GARVTRPSKMVEETEANAIAFDENSPL 162
>Q46GC8:RS4_METBF 30S ribosomal protein S4P - Methanosarcina barkeri (strain Fusaro /| DSM 804) Length = 216 Score = 38.1 bits (87), Expect = 0.055 Identities = 23/88 (26%), Positives = 40/88 (45%) Frame = +3 Query: 405 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 584 +L KL G+I + + L RRL T +++L A + +A +I GH+ + Sbjct: 81 ILAKLIRYGIIKSDADIDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAI 140 Query: 585 GPETVTDPAFLVTRNMEDFITWVDSSKI 668 T P LV++ E I + +S + Sbjct: 141 NGRKATVPGMLVSKEDEMHIGYYATSPL 168
>Q2LQD0:RS4_SYNAS 30S ribosomal protein S4 - Syntrophus aciditrophicus (strain SB)| Length = 209 Score = 36.2 bits (82), Expect = 0.21 Identities = 22/67 (32%), Positives = 32/67 (47%) Frame = +3 Query: 486 FARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSK 665 + RRL ++ +L FA EA + H V V P+FLV N+ DFI + + Sbjct: 96 YLERRLDNMVYRLGFANSRNEARQLVRHNHFLVNGRKVNIPSFLV--NIGDFIEVTEEGR 153 Query: 666 IKKKIME 686 KI+E Sbjct: 154 KNNKIIE 160
>Q3IQT8:RS4_NATPD 30S ribosomal protein S4P - Natronomonas pharaonis (strain DSM 2160| / ATCC 35678) Length = 174 Score = 36.2 bits (82), Expect = 0.21 Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 1/138 (0%) Frame = +3 Query: 258 EAAVTQRYSLVDRDD-YKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGV 434 E + RY LV++++ ++ + + ++ +I + E L +L +GV Sbjct: 25 EGDLLSRYGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVAAAEAGSEFLARLKRIGV 84 Query: 435 IPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAF 614 + + SL L V+ RRL T+ + ++A +I GHV V V+ P++ Sbjct: 85 LDDEDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAPSY 144 Query: 615 LVTRNMEDFITWVDSSKI 668 V E I + ++S + Sbjct: 145 KVDVAEEGEIEFDETSPL 162
>Q97J08:RS4B_CLOAB Putative 30S ribosomal protein S4 B - Clostridium acetobutylicum| Length = 192 Score = 35.4 bits (80), Expect = 0.36 Identities = 28/95 (29%), Positives = 46/95 (48%) Frame = +3 Query: 405 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 584 +L+K + V KS K E + V + RRL ++ +L F L+EA + GH+ V Sbjct: 54 VLEKQFKKIVFNALKSKEKSEDILVQSL-ERRLDNLVYRLGFGSTLREARQMVSHGHILV 112 Query: 585 GPETVTDPAFLVTRNMEDFITWVDSSKIKKKIMEY 689 + V P++ V N+ D ++ S +KI Y Sbjct: 113 NGQKVDIPSYKV--NIGDEVSLRSKS---RKIQTY 142
>A2SSV9:RS4_METLZ 30S ribosomal protein S4P - Methanocorpusculum labreanum (strain| ATCC 43576 / DSM 4855 / Z) Length = 181 Score = 35.0 bits (79), Expect = 0.47 Identities = 24/97 (24%), Positives = 43/97 (44%) Frame = +3 Query: 378 PFRIEMTGMLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAIT 557 P I L+ L G++ ++ L V RRL TI+ + A K+A Sbjct: 69 PKTIARRDELVGTLQRYGLLGPDAAMDNILSLKVEDILERRLQTIVYRKGLARSPKQARQ 128 Query: 558 YIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKI 668 I GH+ + + V+ P+++V+ E I + +S + Sbjct: 129 LITHGHIAINGQRVSVPSYMVSIAEEAGIMYYATSSL 165
>Q00862:RS4_HALMA 30S ribosomal protein S4P - Haloarcula marismortui (Halobacterium| marismortui) Length = 171 Score = 34.7 bits (78), Expect = 0.61 Identities = 21/91 (23%), Positives = 42/91 (46%) Frame = +3 Query: 408 LDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVG 587 L +L G++ + L L V+ RRL T++ + +A ++A +I GH+ + Sbjct: 72 LARLKRYGILNEQDQLDDVLSLDVTDVLERRLQTVVYRKGYANTPEQARQFIVHGHIVLD 131 Query: 588 PETVTDPAFLVTRNMEDFITWVDSSKIKKKI 680 VT P V +E + + + S + ++ Sbjct: 132 DARVTRPGMTVETAVESSVGFDEHSSLSDEL 162
>Q2RFS5:RS4_MOOTA 30S ribosomal protein S4 - Moorella thermoacetica (strain ATCC| 39073) Length = 208 Score = 34.3 bits (77), Expect = 0.80 Identities = 22/64 (34%), Positives = 31/64 (48%) Frame = +3 Query: 495 RRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKK 674 RRL ++ +L FA+ EA T + GH V V P++LV D I+ + SK Sbjct: 98 RRLDNVVYRLGFADSRAEARTLVRHGHFLVNGRKVNIPSYLVRPG--DTISVREKSKASP 155 Query: 675 KIME 686 K E Sbjct: 156 KFKE 159
>Q1QMT5:RS4_NITHX 30S ribosomal protein S4 - Nitrobacter hamburgensis (strain X14 /| DSM 10229) Length = 205 Score = 33.9 bits (76), Expect = 1.0 Identities = 21/66 (31%), Positives = 34/66 (51%) Frame = +3 Query: 495 RRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKK 674 RRL T++ + KF + A +I GHV+V V P++ + + D I D+SK Sbjct: 94 RRLDTVVYRAKFVPTMFAARQFINHGHVKVNGRRVNIPSYKL--KVGDAIEVKDASKQLA 151 Query: 675 KIMEYN 692 ++E N Sbjct: 152 LVLEAN 157
>Q3ST14:RS4_NITWN 30S ribosomal protein S4 - Nitrobacter winogradskyi (strain Nb-255| / ATCC 25391) Length = 205 Score = 33.5 bits (75), Expect = 1.4 Identities = 20/66 (30%), Positives = 34/66 (51%) Frame = +3 Query: 495 RRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKK 674 RRL T++ + KF + A +I GHV+V V P++ + + D + D+SK Sbjct: 94 RRLDTVVYRAKFVPTIFAARQFINHGHVKVNGRRVNIPSYKL--KVGDTVEVKDASKQLA 151 Query: 675 KIMEYN 692 ++E N Sbjct: 152 LVLEAN 157
>Q250K5:RS4_DESHY 30S ribosomal protein S4 - Desulfitobacterium hafniense (strain| Y51) Length = 208 Score = 33.5 bits (75), Expect = 1.4 Identities = 21/70 (30%), Positives = 34/70 (48%) Frame = +3 Query: 495 RRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKK 674 RRL ++ +L FA EA + GH + V P+FLV + D + ++SK Sbjct: 99 RRLDNVVFQLGFATSRPEARQLVRHGHFTINGRRVDIPSFLV--RVGDVVGVKEASKSSP 156 Query: 675 KIMEYNGALD 704 ++ E +LD Sbjct: 157 RLKEILSSLD 166
>Q5FQ27:RS4_GLUOX 30S ribosomal protein S4 - Gluconobacter oxydans (Gluconobacter| suboxydans) Length = 205 Score = 33.1 bits (74), Expect = 1.8 Identities = 22/57 (38%), Positives = 30/57 (52%) Frame = +3 Query: 495 RRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSK 665 RRL ++ +LKFA + +I GHV V + V P++LV D I DSSK Sbjct: 94 RRLDAVVYRLKFAITPFASRQFISHGHVTVNGKKVNIPSYLVKEG--DVIEVRDSSK 148
>Q12200:NPC1_YEAST Niemann-pick type C-related protein 1 precursor - Saccharomyces| cerevisiae (Baker's yeast) Length = 1170 Score = 33.1 bits (74), Expect = 1.8 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 4/126 (3%) Frame = -2 Query: 884 FAFYSSLAFITQVALQ---QITILTYCSLRLGLKNITGVAKLNHRWSRNFYYHDTSSNHG 714 FA YS+++ I LQ ++IL+ R K ITG + + + FY+ + Sbjct: 692 FAIYSTVSVIFNGVLQLTAYVSILSLYEKRSNYKQITGNEETKESFLKTFYFKMLTQKRL 751 Query: 713 IIIIQCTIILHDLFLDLRGIHPG-DEVLHVPGHKEGWIGDRLWAYTHMSLFNVGDSLFKV 537 IIII L L I G D+ L VP ++ ++ D + S NVG ++ V Sbjct: 752 IIIIFSAWFFTSLVF-LPEIQFGLDQTLAVP--QDSYLVD--YFKDVYSFLNVGPPVYMV 806 Query: 536 FSKLEL 519 L+L Sbjct: 807 VKNLDL 812
>Q218M1:RS4_RHOPB 30S ribosomal protein S4 - Rhodopseudomonas palustris (strain| BisB18) Length = 205 Score = 32.3 bits (72), Expect = 3.0 Identities = 20/66 (30%), Positives = 34/66 (51%) Frame = +3 Query: 495 RRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKK 674 RRL T++ + KF + A +I GHV+V + V ++ V + D + +SSK Sbjct: 94 RRLDTVVYRAKFVSTMFAARQFINHGHVKVNGKRVNIASYKV--KVGDLVEVKESSKQLT 151 Query: 675 KIMEYN 692 ++E N Sbjct: 152 FVLEAN 157
>Q8RE43:RS4_FUSNN 30S ribosomal protein S4 - Fusobacterium nucleatum subsp. nucleatum| Length = 195 Score = 32.3 bits (72), Expect = 3.0 Identities = 17/65 (26%), Positives = 35/65 (53%) Frame = +3 Query: 471 LSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITW 650 L++ + RRL ++ +L FA+ ++A + GH+ V V +F V + D ++ Sbjct: 80 LTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIASFRV--KVGDIVSV 137 Query: 651 VDSSK 665 +++SK Sbjct: 138 IENSK 142
>Q3A6M1:RS4_PELCD 30S ribosomal protein S4 - Pelobacter carbinolicus (strain DSM 2380| / Gra Bd 1) Length = 209 Score = 32.0 bits (71), Expect = 4.0 Identities = 30/111 (27%), Positives = 48/111 (43%) Frame = +3 Query: 372 RDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEA 551 R+ R++ T LL+K + S+ ++ RRL + + +L FA E Sbjct: 58 REKQRMKRTYGLLEKQFR-AYFDKADSMKGVTGENLLVLLERRLDSAVYRLGFASSRTEG 116 Query: 552 ITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKKKIMEYNGALD 704 + QGH V V P++++ N D I + S +KI N ALD Sbjct: 117 RALVRQGHFLVNGRKVNIPSYVMRPN--DVIELREKS---RKITRINDALD 162
>O66484:RS4_AQUAE 30S ribosomal protein S4 - Aquifex aeolicus| Length = 211 Score = 31.6 bits (70), Expect = 5.2 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = +3 Query: 486 FARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLV 620 + RRL ++ +L FA ++A + GHV V + V P++LV Sbjct: 95 YLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV 139
>Q47R66:RS4_THEFY 30S ribosomal protein S4 - Thermobifida fusca (strain YX)| Length = 203 Score = 31.2 bits (69), Expect = 6.8 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 11/75 (14%) Frame = +3 Query: 498 RLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLV-----------TRNMEDFI 644 RLAT++++ FA + A +I GH+ V + V P++ V +R + FI Sbjct: 93 RLATVLLRAGFAASIYAARQFINHGHITVDGKKVDIPSYQVKPGQIVSVREKSRKLVPFI 152 Query: 645 TWVDSSKIKKKIMEY 689 + +KI Y Sbjct: 153 EAAEGVHADEKIASY 167
>Q07R54:RS4_RHOP5 30S ribosomal protein S4 - Rhodopseudomonas palustris (strain| BisA53) Length = 205 Score = 30.8 bits (68), Expect = 8.9 Identities = 20/64 (31%), Positives = 33/64 (51%) Frame = +3 Query: 495 RRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKK 674 RRL T++ + KF + A +I GHV+V + V ++ V + D I +SSK Sbjct: 94 RRLDTVVYRAKFVATMFAARQFINHGHVKVNGKRVNISSYKV--KVGDLIEVKESSKQLA 151 Query: 675 KIME 686 ++E Sbjct: 152 FVLE 155
>Q2ITR6:RS4_RHOP2 30S ribosomal protein S4 - Rhodopseudomonas palustris (strain HaA2)| Length = 205 Score = 30.8 bits (68), Expect = 8.9 Identities = 19/64 (29%), Positives = 33/64 (51%) Frame = +3 Query: 495 RRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKK 674 RRL T++ + KF + A +I GH++V + V ++ V + D I +SSK Sbjct: 94 RRLDTVVYRAKFVSTMFAARQFINHGHIKVNGKRVNISSYKV--RVGDLIEVKESSKQLA 151 Query: 675 KIME 686 ++E Sbjct: 152 FVLE 155
>Q28TU1:RS4_JANSC 30S ribosomal protein S4 - Jannaschia sp. (strain CCS1)| Length = 206 Score = 30.8 bits (68), Expect = 8.9 Identities = 20/67 (29%), Positives = 31/67 (46%) Frame = +3 Query: 495 RRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKK 674 RRL ++ + KF + A ++ GHV V + V P++ V D I D SK Sbjct: 94 RRLDAVVYRAKFVPTVFAARQFVNHGHVTVNGQKVNIPSYRVKEG--DVIAVRDKSKQLA 151 Query: 675 KIMEYNG 695 ++E G Sbjct: 152 VVLEAVG 158
>A0T0H2:RR4_PHATR Chloroplast 30S ribosomal protein S4 - Phaeodactylum tricornutum| Length = 203 Score = 30.8 bits (68), Expect = 8.9 Identities = 20/65 (30%), Positives = 33/65 (50%) Frame = +3 Query: 498 RLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKKK 677 RL T+ L FA+ L +A + GH+ + + V+ P+F N D I+ + S K Sbjct: 93 RLDTLCFTLGFAKSLAQARQLVNHGHITINKKVVSIPSFQCRLN--DIISIKEKSS-SKT 149 Query: 678 IMEYN 692 ++E N Sbjct: 150 LVETN 154
>Q59650:MURE_PSEAE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase| - Pseudomonas aeruginosa Length = 487 Score = 30.8 bits (68), Expect = 8.9 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -2 Query: 692 IILHDLFLDLRGIHPGDEVLHVPGHKE 612 +++ +L LD RG+ PGD L VPG ++ Sbjct: 16 LLIRELTLDSRGVRPGDLFLAVPGGRQ 42 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 137,953,539 Number of extensions: 2697566 Number of successful extensions: 7801 Number of sequences better than 10.0: 78 Number of HSP's gapped: 7776 Number of HSP's successfully gapped: 78 Length of query: 328 Length of database: 100,686,439 Length adjustment: 113 Effective length of query: 215 Effective length of database: 69,691,104 Effective search space: 14983587360 Effective search space used: 14983587360 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
