| Clone Name | FLbaf33l12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY109993.1| Zea mays CL16286_1 mRNA sequence Length = 967 Score = 448 bits (226), Expect = e-122 Identities = 397/454 (87%) Strand = Plus / Plus Query: 266 cgtcacgcagcgctacagcctcgtcgacagggacgactacaagaagtacaacgggatttg 325 |||||| ||||||||| ||||||| || ||||||||||||||||||||||| ||||| || Sbjct: 276 cgtcacacagcgctaccgcctcgtggagagggacgactacaagaagtacaatgggatatg 335 Query: 326 cctgatgtcgcagaagctcgtgaacatcataaagcagatggatcccagggaccctttcag 385 | | ||| ||| |||||||| ||||||||||| |||||||| || || ||||||||||| Sbjct: 336 cttaatggtgcaaaagctcgttaacatcataaaccagatggacccaagagaccctttcag 395 Query: 386 aatcgagatgacaggcatgctgctcgataagctgtataatatgggtgtaattccaacaaa 445 |||| ||||||||| | || | |||||||||||||||||||||||||||||| ||||||| Sbjct: 396 aatccagatgacagacttgattctcgataagctgtataatatgggtgtaatttcaacaaa 455 Query: 446 gaagagcttggttaaatgcgagagactttcagtgagcgctttcgccaggcggagacttgc 505 |||||||| | || || |||| ||||||||||||||| ||| ||||||||||||||| Sbjct: 456 agagagcttgttaaagtgtgagaaactttcagtgagcgccttctgcaggcggagacttgc 515 Query: 506 aacaattatggtgaagctcaagtttgctgaacaccttaaagaggctatcacctacattga 565 |||| |||||||||||||||||||||| || |||||||| |||||| | || ||||| || Sbjct: 516 aacagttatggtgaagctcaagtttgcagagcaccttaaggaggctgtgacgtacatcga 575 Query: 566 acagggacatgtgcgtgtaggcccagagacggtcaccgatccagccttccttgtgaccag 625 |||||| ||||||||||| || ||||| | ||||| || |||||||| ||||||||||| Sbjct: 576 acaggggcatgtgcgtgtcggtccagatgcagtcacggacccagcctttcttgtgaccag 635 Query: 626 gaacatggaggacttcatcacctgggtggattcctcgaagatcaagaaaaagatcatgga 685 ||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| Sbjct: 636 aaacatggaggacttcatcacctgggtggattcctcaaagatcaagaggaaggtcatgga 695 Query: 686 gtataatggtgcattggatgattatgatgccatg 719 ||| |||| |||||| |||||||||||||||||| Sbjct: 696 gtacaatgatgcattagatgattatgatgccatg 729 Score = 50.1 bits (25), Expect = 0.015 Identities = 25/25 (100%) Strand = Plus / Plus Query: 176 gatgaggaagctcaagttccatgag 200 ||||||||||||||||||||||||| Sbjct: 186 gatgaggaagctcaagttccatgag 210
>gb|BT018698.1| Zea mays clone EL01N0514C09.d mRNA sequence Length = 1736 Score = 248 bits (125), Expect = 3e-62 Identities = 203/229 (88%) Strand = Plus / Plus Query: 491 caggcggagacttgcaacaattatggtgaagctcaagtttgctgaacaccttaaagaggc 550 ||||||||||||||||||| |||||||||||||||||||||| || |||||||| ||||| Sbjct: 1266 caggcggagacttgcaacagttatggtgaagctcaagtttgcagagcaccttaaggaggc 1325 Query: 551 tatcacctacattgaacagggacatgtgcgtgtaggcccagagacggtcaccgatccagc 610 | | || ||||| |||||||| || |||||||| || ||||| | ||||| || ||||| Sbjct: 1326 tgtgacgtacatcgaacaggggcacgtgcgtgtcggtccagatgcagtcacggacccagc 1385 Query: 611 cttccttgtgaccaggaacatggaggacttcatcacctgggtggattcctcgaagatcaa 670 ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1386 ctttcttgtgaccagaaacatggaggacttcatcacctgggtggattcctcaaagatcaa 1445 Query: 671 gaaaaagatcatggagtataatggtgcattggatgattatgatgccatg 719 || ||| |||||||||| |||| |||||| |||||||||||||||||| Sbjct: 1446 gaggaaggtcatggagtacaatgatgcattagatgattatgatgccatg 1494 Score = 67.9 bits (34), Expect = 6e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 419 gtataatatgggtgtaattccaacaaagaagagcttggttaaatgcgagagactttcagt 478 ||||||||||||||||||| ||||||| |||||||| | || || |||| ||||||||| Sbjct: 949 gtataatatgggtgtaatttcaacaaaagagagcttgttaaagtgtgagaaactttcagt 1008 Query: 479 gagcgc 484 |||||| Sbjct: 1009 gagcgc 1014
>emb|CT834720.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112G02, full insert sequence Length = 1163 Score = 224 bits (113), Expect = 5e-55 Identities = 197/225 (87%) Strand = Plus / Plus Query: 491 caggcggagacttgcaacaattatggtgaagctcaagtttgctgaacaccttaaagaggc 550 ||||||||| ||||||||| | ||||||||||||||||| || || |||||||||||||| Sbjct: 713 caggcggaggcttgcaacagtcatggtgaagctcaagttcgcggagcaccttaaagaggc 772 Query: 551 tatcacctacattgaacagggacatgtgcgtgtaggcccagagacggtcaccgatccagc 610 | || ||||| | ||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 773 cgtgacatacatacagcagggtcatgtgcgtgtaggcccagagacagtcaccgatccagc 832 Query: 611 cttccttgtgaccaggaacatggaggacttcatcacctgggtggattcctcgaagatcaa 670 ||| ||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 833 ctttcttgtaaccaggaacatggaggatttcatcacctgggttgactcctcaaagatcaa 892 Query: 671 gaaaaagatcatggagtataatggtgcattggatgattatgatgc 715 || |||| || |||||||||||||| |||||| |||| |||||| Sbjct: 893 gagaaaggtccaggagtataatggtgaattggacgattttgatgc 937 Score = 204 bits (103), Expect = 4e-49 Identities = 256/307 (83%) Strand = Plus / Plus Query: 176 gatgaggaagctcaagttccatgagaggaagctgctgaagaagaccaacttcctcctgtg 235 |||||||||||||| |||||| ||| |||||| || |||||||||||||||||| | Sbjct: 111 gatgaggaagctcaggttccacgagcagaagctactcaagaagaccaacttcctcgactt 170 Query: 236 gaagcgggagggcggccaccgcgaggccgccgtcacgcagcgctacagcctcgtcgacag 295 ||| ||||| ||||||||||| ||| |||||||||||||||| ||||||||| || Sbjct: 171 caagagggagaaaggccaccgcgacgccatcgtcacgcagcgctacctcctcgtcgagag 230 Query: 296 ggacgactacaagaagtacaacgggatttgcctgatgtcgcagaagctcgtgaacatcat 355 |||||||||||||||||||| | || ||||||||| ||| |||||||| ||||| || Sbjct: 231 agacgactacaagaagtacaatgtcatatgcctgatggtgcaaaagctcgtcaacattat 290 Query: 356 aaagcagatggatcccagggaccctttcagaatcgagatgacaggcatgctgctcgataa 415 |||||| ||||| || || ||||||| |||| |||||||||| |||| |||||||||| Sbjct: 291 aaagcaaatggacccgagagacccttacagagcggagatgacagacatgttgctcgataa 350 Query: 416 gctgtataatatgggtgtaattccaacaaagaagagcttggttaaatgcgagagactttc 475 |||||| || |||||||||||||||||||| |||||| || | | ||| || | |||||| Sbjct: 351 gctgtacaacatgggtgtaattccaacaaaaaagagcctgttaacatgtgaaaaactttc 410 Query: 476 agtgagc 482 ||||||| Sbjct: 411 agtgagc 417
>ref|NM_001060689.1| Oryza sativa (japonica cultivar-group) Os04g0662100 (Os04g0662100) mRNA, partial cds Length = 1932 Score = 224 bits (113), Expect = 5e-55 Identities = 197/225 (87%) Strand = Plus / Plus Query: 491 caggcggagacttgcaacaattatggtgaagctcaagtttgctgaacaccttaaagaggc 550 ||||||||| ||||||||| | ||||||||||||||||| || || |||||||||||||| Sbjct: 1499 caggcggaggcttgcaacagtcatggtgaagctcaagttcgcggagcaccttaaagaggc 1558 Query: 551 tatcacctacattgaacagggacatgtgcgtgtaggcccagagacggtcaccgatccagc 610 | || ||||| | ||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 1559 cgtgacatacatacagcagggtcatgtgcgtgtaggcccagagacagtcaccgatccagc 1618 Query: 611 cttccttgtgaccaggaacatggaggacttcatcacctgggtggattcctcgaagatcaa 670 ||| ||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 1619 ctttcttgtaaccaggaacatggaggatttcatcacctgggttgactcctcaaagatcaa 1678 Query: 671 gaaaaagatcatggagtataatggtgcattggatgattatgatgc 715 || |||| || |||||||||||||| |||||| |||| |||||| Sbjct: 1679 gagaaaggtccaggagtataatggtgaattggacgattttgatgc 1723 Score = 101 bits (51), Expect = 5e-18 Identities = 117/139 (84%) Strand = Plus / Plus Query: 176 gatgaggaagctcaagttccatgagaggaagctgctgaagaagaccaacttcctcctgtg 235 |||||||||||||| |||||| ||| |||||| || |||||||||||||||||| | Sbjct: 98 gatgaggaagctcaggttccacgagcagaagctactcaagaagaccaacttcctcgactt 157 Query: 236 gaagcgggagggcggccaccgcgaggccgccgtcacgcagcgctacagcctcgtcgacag 295 ||| ||||| ||||||||||| ||| |||||||||||||||| ||||||||| || Sbjct: 158 caagagggagaaaggccaccgcgacgccatcgtcacgcagcgctacctcctcgtcgagag 217 Query: 296 ggacgactacaagaagtac 314 |||||||||||||||||| Sbjct: 218 agacgactacaagaagtac 236 Score = 77.8 bits (39), Expect = 7e-11 Identities = 93/111 (83%) Strand = Plus / Plus Query: 311 gtacaacgggatttgcctgatgtcgcagaagctcgtgaacatcataaagcagatggatcc 370 |||||| || || ||||||||| ||| |||||||| ||||| |||||||| ||||| || Sbjct: 384 gtacaatggcatatgcctgatggtgcaaaagctcgtcaacattataaagcaaatggaccc 443 Query: 371 cagggaccctttcagaatcgagatgacaggcatgctgctcgataagctgta 421 || ||||||| |||| |||||||||| |||| |||||||||||||||| Sbjct: 444 gagagacccttacagagcggagatgacagacatgttgctcgataagctgta 494 Score = 50.1 bits (25), Expect = 0.015 Identities = 49/57 (85%) Strand = Plus / Plus Query: 426 atgggtgtaattccaacaaagaagagcttggttaaatgcgagagactttcagtgagc 482 |||||||||||||||||||| |||||| || | | ||| || | ||||||||||||| Sbjct: 1145 atgggtgtaattccaacaaaaaagagcctgttaacatgtgaaaaactttcagtgagc 1201
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 224 bits (113), Expect = 5e-55 Identities = 197/225 (87%) Strand = Plus / Minus Query: 491 caggcggagacttgcaacaattatggtgaagctcaagtttgctgaacaccttaaagaggc 550 ||||||||| ||||||||| | ||||||||||||||||| || || |||||||||||||| Sbjct: 33818628 caggcggaggcttgcaacagtcatggtgaagctcaagttcgcggagcaccttaaagaggc 33818569 Query: 551 tatcacctacattgaacagggacatgtgcgtgtaggcccagagacggtcaccgatccagc 610 | || ||||| | ||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 33818568 cgtgacatacatacagcagggtcatgtgcgtgtaggcccagagacagtcaccgatccagc 33818509 Query: 611 cttccttgtgaccaggaacatggaggacttcatcacctgggtggattcctcgaagatcaa 670 ||| ||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 33818508 ctttcttgtaaccaggaacatggaggatttcatcacctgggttgactcctcaaagatcaa 33818449 Query: 671 gaaaaagatcatggagtataatggtgcattggatgattatgatgc 715 || |||| || |||||||||||||| |||||| |||| |||||| Sbjct: 33818448 gagaaaggtccaggagtataatggtgaattggacgattttgatgc 33818404 Score = 101 bits (51), Expect = 5e-18 Identities = 117/139 (84%) Strand = Plus / Minus Query: 176 gatgaggaagctcaagttccatgagaggaagctgctgaagaagaccaacttcctcctgtg 235 |||||||||||||| |||||| ||| |||||| || |||||||||||||||||| | Sbjct: 33820029 gatgaggaagctcaggttccacgagcagaagctactcaagaagaccaacttcctcgactt 33819970 Query: 236 gaagcgggagggcggccaccgcgaggccgccgtcacgcagcgctacagcctcgtcgacag 295 ||| ||||| ||||||||||| ||| |||||||||||||||| ||||||||| || Sbjct: 33819969 caagagggagaaaggccaccgcgacgccatcgtcacgcagcgctacctcctcgtcgagag 33819910 Query: 296 ggacgactacaagaagtac 314 |||||||||||||||||| Sbjct: 33819909 agacgactacaagaagtac 33819891 Score = 77.8 bits (39), Expect = 7e-11 Identities = 93/111 (83%) Strand = Plus / Minus Query: 311 gtacaacgggatttgcctgatgtcgcagaagctcgtgaacatcataaagcagatggatcc 370 |||||| || || ||||||||| ||| |||||||| ||||| |||||||| ||||| || Sbjct: 33819743 gtacaatggcatatgcctgatggtgcaaaagctcgtcaacattataaagcaaatggaccc 33819684 Query: 371 cagggaccctttcagaatcgagatgacaggcatgctgctcgataagctgta 421 || ||||||| |||| |||||||||| |||| |||||||||||||||| Sbjct: 33819683 gagagacccttacagagcggagatgacagacatgttgctcgataagctgta 33819633 Score = 50.1 bits (25), Expect = 0.015 Identities = 49/57 (85%) Strand = Plus / Minus Query: 426 atgggtgtaattccaacaaagaagagcttggttaaatgcgagagactttcagtgagc 482 |||||||||||||||||||| |||||| || | | ||| || | ||||||||||||| Sbjct: 33818982 atgggtgtaattccaacaaaaaagagcctgttaacatgtgaaaaactttcagtgagc 33818926
>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01, complete sequence Length = 163448 Score = 224 bits (113), Expect = 5e-55 Identities = 197/225 (87%) Strand = Plus / Minus Query: 491 caggcggagacttgcaacaattatggtgaagctcaagtttgctgaacaccttaaagaggc 550 ||||||||| ||||||||| | ||||||||||||||||| || || |||||||||||||| Sbjct: 30527 caggcggaggcttgcaacagtcatggtgaagctcaagttcgcggagcaccttaaagaggc 30468 Query: 551 tatcacctacattgaacagggacatgtgcgtgtaggcccagagacggtcaccgatccagc 610 | || ||||| | ||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 30467 cgtgacatacatacagcagggtcatgtgcgtgtaggcccagagacagtcaccgatccagc 30408 Query: 611 cttccttgtgaccaggaacatggaggacttcatcacctgggtggattcctcgaagatcaa 670 ||| ||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 30407 ctttcttgtaaccaggaacatggaggatttcatcacctgggttgactcctcaaagatcaa 30348 Query: 671 gaaaaagatcatggagtataatggtgcattggatgattatgatgc 715 || |||| || |||||||||||||| |||||| |||| |||||| Sbjct: 30347 gagaaaggtccaggagtataatggtgaattggacgattttgatgc 30303 Score = 101 bits (51), Expect = 5e-18 Identities = 117/139 (84%) Strand = Plus / Minus Query: 176 gatgaggaagctcaagttccatgagaggaagctgctgaagaagaccaacttcctcctgtg 235 |||||||||||||| |||||| ||| |||||| || |||||||||||||||||| | Sbjct: 31928 gatgaggaagctcaggttccacgagcagaagctactcaagaagaccaacttcctcgactt 31869 Query: 236 gaagcgggagggcggccaccgcgaggccgccgtcacgcagcgctacagcctcgtcgacag 295 ||| ||||| ||||||||||| ||| |||||||||||||||| ||||||||| || Sbjct: 31868 caagagggagaaaggccaccgcgacgccatcgtcacgcagcgctacctcctcgtcgagag 31809 Query: 296 ggacgactacaagaagtac 314 |||||||||||||||||| Sbjct: 31808 agacgactacaagaagtac 31790 Score = 77.8 bits (39), Expect = 7e-11 Identities = 93/111 (83%) Strand = Plus / Minus Query: 311 gtacaacgggatttgcctgatgtcgcagaagctcgtgaacatcataaagcagatggatcc 370 |||||| || || ||||||||| ||| |||||||| ||||| |||||||| ||||| || Sbjct: 31642 gtacaatggcatatgcctgatggtgcaaaagctcgtcaacattataaagcaaatggaccc 31583 Query: 371 cagggaccctttcagaatcgagatgacaggcatgctgctcgataagctgta 421 || ||||||| |||| |||||||||| |||| |||||||||||||||| Sbjct: 31582 gagagacccttacagagcggagatgacagacatgttgctcgataagctgta 31532 Score = 50.1 bits (25), Expect = 0.015 Identities = 49/57 (85%) Strand = Plus / Minus Query: 426 atgggtgtaattccaacaaagaagagcttggttaaatgcgagagactttcagtgagc 482 |||||||||||||||||||| |||||| || | | ||| || | ||||||||||||| Sbjct: 30881 atgggtgtaattccaacaaaaaagagcctgttaacatgtgaaaaactttcagtgagc 30825
>dbj|AK109706.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-G05, full insert sequence Length = 1933 Score = 224 bits (113), Expect = 5e-55 Identities = 197/225 (87%) Strand = Plus / Plus Query: 491 caggcggagacttgcaacaattatggtgaagctcaagtttgctgaacaccttaaagaggc 550 ||||||||| ||||||||| | ||||||||||||||||| || || |||||||||||||| Sbjct: 1499 caggcggaggcttgcaacagtcatggtgaagctcaagttcgcggagcaccttaaagaggc 1558 Query: 551 tatcacctacattgaacagggacatgtgcgtgtaggcccagagacggtcaccgatccagc 610 | || ||||| | ||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 1559 cgtgacatacatacagcagggtcatgtgcgtgtaggcccagagacagtcaccgatccagc 1618 Query: 611 cttccttgtgaccaggaacatggaggacttcatcacctgggtggattcctcgaagatcaa 670 ||| ||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 1619 ctttcttgtaaccaggaacatggaggatttcatcacctgggttgactcctcaaagatcaa 1678 Query: 671 gaaaaagatcatggagtataatggtgcattggatgattatgatgc 715 || |||| || |||||||||||||| |||||| |||| |||||| Sbjct: 1679 gagaaaggtccaggagtataatggtgaattggacgattttgatgc 1723 Score = 101 bits (51), Expect = 5e-18 Identities = 117/139 (84%) Strand = Plus / Plus Query: 176 gatgaggaagctcaagttccatgagaggaagctgctgaagaagaccaacttcctcctgtg 235 |||||||||||||| |||||| ||| |||||| || |||||||||||||||||| | Sbjct: 98 gatgaggaagctcaggttccacgagcagaagctactcaagaagaccaacttcctcgactt 157 Query: 236 gaagcgggagggcggccaccgcgaggccgccgtcacgcagcgctacagcctcgtcgacag 295 ||| ||||| ||||||||||| ||| |||||||||||||||| ||||||||| || Sbjct: 158 caagagggagaaaggccaccgcgacgccatcgtcacgcagcgctacctcctcgtcgagag 217 Query: 296 ggacgactacaagaagtac 314 |||||||||||||||||| Sbjct: 218 agacgactacaagaagtac 236 Score = 77.8 bits (39), Expect = 7e-11 Identities = 93/111 (83%) Strand = Plus / Plus Query: 311 gtacaacgggatttgcctgatgtcgcagaagctcgtgaacatcataaagcagatggatcc 370 |||||| || || ||||||||| ||| |||||||| ||||| |||||||| ||||| || Sbjct: 384 gtacaatggcatatgcctgatggtgcaaaagctcgtcaacattataaagcaaatggaccc 443 Query: 371 cagggaccctttcagaatcgagatgacaggcatgctgctcgataagctgta 421 || ||||||| |||| |||||||||| |||| |||||||||||||||| Sbjct: 444 gagagacccttacagagcggagatgacagacatgttgctcgataagctgta 494 Score = 50.1 bits (25), Expect = 0.015 Identities = 49/57 (85%) Strand = Plus / Plus Query: 426 atgggtgtaattccaacaaagaagagcttggttaaatgcgagagactttcagtgagc 482 |||||||||||||||||||| |||||| || | | ||| || | ||||||||||||| Sbjct: 1145 atgggtgtaattccaacaaaaaagagcctgttaacatgtgaaaaactttcagtgagc 1201
>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence Length = 141360 Score = 67.9 bits (34), Expect = 6e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 176 gatgaggaagctcaagttccatgagaggaagctgctgaagaa 217 |||||||||||||||||||||||||| |||||| |||||||| Sbjct: 38755 gatgaggaagctcaagttccatgagaagaagcttctgaagaa 38796 Score = 48.1 bits (24), Expect = 0.060 Identities = 42/48 (87%) Strand = Plus / Plus Query: 625 ggaacatggaggacttcatcacctgggtggattcctcgaagatcaaga 672 |||| ||||| || |||||||| ||||| ||||| ||||||||||||| Sbjct: 40052 ggaatatggaagatttcatcacatgggtcgattcgtcgaagatcaaga 40099
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 60.0 bits (30), Expect = 2e-05 Identities = 33/34 (97%) Strand = Plus / Minus Query: 606 ccagccttccttgtgaccaggaacatggaggact 639 ||||||| |||||||||||||||||||||||||| Sbjct: 461442 ccagcctaccttgtgaccaggaacatggaggact 461409
>ref|NM_209318.1| Eremothecium gossypii ADL131Cp (ADL131C), mRNA Length = 552 Score = 60.0 bits (30), Expect = 2e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 606 ccagccttccttgtgaccaggaacatggaggact 639 ||||||| |||||||||||||||||||||||||| Sbjct: 436 ccagcctaccttgtgaccaggaacatggaggact 469
>ref|XM_001219893.1| Chaetomium globosum CBS 148.51 conserved hypothetical protein (CHGG_00673) mRNA, complete cds Length = 552 Score = 54.0 bits (27), Expect = 0.001 Identities = 36/39 (92%) Strand = Plus / Plus Query: 612 ttccttgtgaccaggaacatggaggacttcatcacctgg 650 ||||||||||| ||||||||||||||||| |||||||| Sbjct: 442 ttccttgtgacgcggaacatggaggacttcgtcacctgg 480
>emb|CR714699.2|CNS0GEEV Tetraodon nigroviridis full-length cDNA Length = 817 Score = 54.0 bits (27), Expect = 0.001 Identities = 96/119 (80%) Strand = Plus / Plus Query: 552 atcacctacattgaacagggacatgtgcgtgtaggcccagagacggtcaccgatccagcc 611 ||||||| ||| || ||||| |||||||| || |||||||| | ||||| || ||||| Sbjct: 335 atcaccttcatcgagcagggccatgtgcgcgttggcccagaaattgtcacagacccagcg 394 Query: 612 ttccttgtgaccaggaacatggaggacttcatcacctgggtggattcctcgaagatcaa 670 || || || ||||| || |||||||| || | |||||||||||||| || |||||||| Sbjct: 395 tttctagtcaccagaaatatggaggattttgttacctgggtggattcttccaagatcaa 453
>emb|CR709429.2|CNS0GACH Tetraodon nigroviridis full-length cDNA Length = 911 Score = 54.0 bits (27), Expect = 0.001 Identities = 96/119 (80%) Strand = Plus / Plus Query: 552 atcacctacattgaacagggacatgtgcgtgtaggcccagagacggtcaccgatccagcc 611 ||||||| ||| || ||||| |||||||| || |||||||| | ||||| || ||||| Sbjct: 419 atcaccttcatcgagcagggccatgtgcgcgttggcccagaaattgtcacagacccagcg 478 Query: 612 ttccttgtgaccaggaacatggaggacttcatcacctgggtggattcctcgaagatcaa 670 || || || ||||| || |||||||| || | |||||||||||||| || |||||||| Sbjct: 479 tttctagtcaccagaaatatggaggattttgttacctgggtggattcttccaagatcaa 537
>emb|CR707621.2|CNS0G8Y9 Tetraodon nigroviridis full-length cDNA Length = 947 Score = 54.0 bits (27), Expect = 0.001 Identities = 96/119 (80%) Strand = Plus / Plus Query: 552 atcacctacattgaacagggacatgtgcgtgtaggcccagagacggtcaccgatccagcc 611 ||||||| ||| || ||||| |||||||| || |||||||| | ||||| || ||||| Sbjct: 462 atcaccttcatcgagcagggccatgtgcgcgttggcccagaaattgtcacagacccagcg 521 Query: 612 ttccttgtgaccaggaacatggaggacttcatcacctgggtggattcctcgaagatcaa 670 || || || ||||| || |||||||| || | |||||||||||||| || |||||||| Sbjct: 522 tttctagtcaccagaaatatggaggattttgttacctgggtggattcttccaagatcaa 580
>emb|CR705208.2|CNS0G738 Tetraodon nigroviridis full-length cDNA Length = 897 Score = 54.0 bits (27), Expect = 0.001 Identities = 96/119 (80%) Strand = Plus / Plus Query: 552 atcacctacattgaacagggacatgtgcgtgtaggcccagagacggtcaccgatccagcc 611 ||||||| ||| || ||||| |||||||| || |||||||| | ||||| || ||||| Sbjct: 415 atcaccttcatcgagcagggccatgtgcgcgttggcccagaaattgtcacagacccagcg 474 Query: 612 ttccttgtgaccaggaacatggaggacttcatcacctgggtggattcctcgaagatcaa 670 || || || ||||| || |||||||| || | |||||||||||||| || |||||||| Sbjct: 475 tttctagtcaccagaaatatggaggattttgttacctgggtggattcttccaagatcaa 533
>emb|BX045529.1|CNS097AL Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC19DA01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 806 Score = 50.1 bits (25), Expect = 0.015 Identities = 25/25 (100%) Strand = Plus / Minus Query: 631 tggaggacttcatcacctgggtgga 655 ||||||||||||||||||||||||| Sbjct: 112 tggaggacttcatcacctgggtgga 88
>ref|XM_316402.2| Anopheles gambiae str. PEST ENSANGP00000013047 (ENSANGG00000010558), mRNA Length = 748 Score = 50.1 bits (25), Expect = 0.015 Identities = 25/25 (100%) Strand = Plus / Plus Query: 631 tggaggacttcatcacctgggtgga 655 ||||||||||||||||||||||||| Sbjct: 641 tggaggacttcatcacctgggtgga 665
>ref|XM_588915.2| PREDICTED: Bos taurus similar to U3 small nucleolar ribonucleoprotein protein IMP3 (U3 snoRNP protein IMP3) (BRMS2) (LOC511560), mRNA Length = 1074 Score = 48.1 bits (24), Expect = 0.060 Identities = 63/76 (82%) Strand = Plus / Plus Query: 596 ggtcaccgatccagccttccttgtgaccaggaacatggaggacttcatcacctgggtgga 655 ||||||||| || ||||||||||| || | | |||||||||||| |||||||||| || Sbjct: 462 ggtcaccgaccccgccttccttgtcacgcgaagcatggaggactttgtcacctgggttga 521 Query: 656 ttcctcgaagatcaag 671 || || ||||||||| Sbjct: 522 ctcgtccaagatcaag 537
>ref|XM_613128.2| PREDICTED: Bos taurus similar to U3 small nucleolar ribonucleoprotein protein IMP3 (U3 snoRNP protein IMP3) (BRMS2) (LOC533655), mRNA Length = 1125 Score = 48.1 bits (24), Expect = 0.060 Identities = 63/76 (82%) Strand = Plus / Plus Query: 596 ggtcaccgatccagccttccttgtgaccaggaacatggaggacttcatcacctgggtgga 655 ||||||||| || ||||||||||| || | | |||||||||||| |||||||||| || Sbjct: 462 ggtcaccgaccccgccttccttgtcacgcgaagcatggaggactttgtcacctgggttga 521 Query: 656 ttcctcgaagatcaag 671 || || ||||||||| Sbjct: 522 ctcgtccaagatcaag 537
>ref|XM_544781.2| PREDICTED: Canis familiaris similar to U3 small nucleolar ribonucleoprotein protein IMP3 (U3 snoRNP protein IMP3) (BRMS2) (LOC487656), mRNA Length = 900 Score = 48.1 bits (24), Expect = 0.060 Identities = 51/60 (85%) Strand = Plus / Plus Query: 596 ggtcaccgatccagccttccttgtgaccaggaacatggaggacttcatcacctgggtgga 655 ||||||||| || |||||||| || || | | ||||||||||||| ||||||||||||| Sbjct: 546 ggtcaccgaccccgccttcctcgtcacgcgcagcatggaggacttcgtcacctgggtgga 605
>ref|XM_848283.1| PREDICTED: Canis familiaris similar to U3 small nucleolar ribonucleoprotein protein IMP3 (U3 snoRNP protein IMP3) (BRMS2) (LOC482781), mRNA Length = 1512 Score = 48.1 bits (24), Expect = 0.060 Identities = 51/60 (85%) Strand = Plus / Plus Query: 596 ggtcaccgatccagccttccttgtgaccaggaacatggaggacttcatcacctgggtgga 655 ||||||||| || |||||||| || || | | ||||||||||||| ||||||||||||| Sbjct: 1383 ggtcaccgaccccgccttcctcgtcacgcgcagcatggaggacttcgtcacctgggtgga 1442
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 48.1 bits (24), Expect = 0.060 Identities = 24/24 (100%) Strand = Plus / Minus Query: 560 cattgaacagggacatgtgcgtgt 583 |||||||||||||||||||||||| Sbjct: 2234029 cattgaacagggacatgtgcgtgt 2234006 Score = 46.1 bits (23), Expect = 0.24 Identities = 35/39 (89%) Strand = Plus / Minus Query: 618 gtgaccaggaacatggaggacttcatcacctgggtggat 656 ||||| |||||||||||||| ||| |||| ||||||||| Sbjct: 2233971 gtgacgaggaacatggaggatttcgtcacttgggtggat 2233933
>gb|BC102331.1| Bos taurus cDNA clone MGC:127563 IMAGE:7951114, complete cds Length = 1093 Score = 48.1 bits (24), Expect = 0.060 Identities = 63/76 (82%) Strand = Plus / Plus Query: 596 ggtcaccgatccagccttccttgtgaccaggaacatggaggacttcatcacctgggtgga 655 ||||||||| || ||||||||||| || | | |||||||||||| |||||||||| || Sbjct: 462 ggtcaccgaccccgccttccttgtcacgcgaagcatggaggactttgtcacctgggttga 521 Query: 656 ttcctcgaagatcaag 671 || || ||||||||| Sbjct: 522 ctcgtccaagatcaag 537
>emb|BX045528.1|CNS097AK Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC19DA01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 794 Score = 48.1 bits (24), Expect = 0.060 Identities = 24/24 (100%) Strand = Plus / Plus Query: 632 ggaggacttcatcacctgggtgga 655 |||||||||||||||||||||||| Sbjct: 622 ggaggacttcatcacctgggtgga 645
>ref|XR_004560.1| PREDICTED: Mus musculus RIKEN cDNA 4933427G23 gene (4933427G23Rik), misc RNA Length = 904 Score = 46.1 bits (23), Expect = 0.24 Identities = 38/43 (88%) Strand = Plus / Plus Query: 629 catggaggacttcatcacctgggtggattcctcgaagatcaag 671 |||||||||||| ||||| |||||||||| || ||||||||| Sbjct: 480 catggaggactttgtcaccggggtggattcatccaagatcaag 522
>ref|XR_002344.1| PREDICTED: Mus musculus RIKEN cDNA 4933427G23 gene (4933427G23Rik), misc RNA Length = 904 Score = 46.1 bits (23), Expect = 0.24 Identities = 38/43 (88%) Strand = Plus / Plus Query: 629 catggaggacttcatcacctgggtggattcctcgaagatcaag 671 |||||||||||| ||||| |||||||||| || ||||||||| Sbjct: 480 catggaggactttgtcaccggggtggattcatccaagatcaag 522
>ref|XR_005167.1| PREDICTED: Mus musculus RIKEN cDNA 4933427G23 gene (4933427G23Rik), misc RNA Length = 904 Score = 46.1 bits (23), Expect = 0.24 Identities = 38/43 (88%) Strand = Plus / Plus Query: 629 catggaggacttcatcacctgggtggattcctcgaagatcaag 671 |||||||||||| ||||| |||||||||| || ||||||||| Sbjct: 480 catggaggactttgtcaccggggtggattcatccaagatcaag 522
>ref|XM_658683.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6171.2), mRNA Length = 567 Score = 46.1 bits (23), Expect = 0.24 Identities = 32/35 (91%) Strand = Plus / Plus Query: 625 ggaacatggaggacttcatcacctgggtggattcc 659 ||||||||||||||||| | || |||||||||||| Sbjct: 470 ggaacatggaggacttcgtgacgtgggtggattcc 504
>gb|AC117663.13| Mus musculus chromosome 5, clone RP23-354E8, complete sequence Length = 197426 Score = 46.1 bits (23), Expect = 0.24 Identities = 38/43 (88%) Strand = Plus / Plus Query: 629 catggaggacttcatcacctgggtggattcctcgaagatcaag 671 |||||||||||| ||||| |||||||||| || ||||||||| Sbjct: 85186 catggaggactttgtcaccggggtggattcatccaagatcaag 85228
>gb|AC124348.5| Mus musculus BAC clone RP24-462O9 from chromosome 9, complete sequence Length = 187568 Score = 46.1 bits (23), Expect = 0.24 Identities = 38/43 (88%) Strand = Plus / Plus Query: 629 catggaggacttcatcacctgggtggattcctcgaagatcaag 671 |||||||||||| ||||||||||||| || || ||||||||| Sbjct: 37027 catggaggactttgtcacctgggtggactcatccaagatcaag 37069
>gb|AC126257.4| Mus musculus BAC clone RP24-247A8 from chromosome 9, complete sequence Length = 174764 Score = 46.1 bits (23), Expect = 0.24 Identities = 38/43 (88%) Strand = Plus / Plus Query: 629 catggaggacttcatcacctgggtggattcctcgaagatcaag 671 |||||||||||| ||||||||||||| || || ||||||||| Sbjct: 153526 catggaggactttgtcacctgggtggactcatccaagatcaag 153568
>ref|NM_133976.1| Mus musculus IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast) (Imp3), mRNA gb|BC009145.1| Mus musculus IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast), mRNA (cDNA clone MGC:6463 IMAGE:2631069), complete cds Length = 918 Score = 46.1 bits (23), Expect = 0.24 Identities = 38/43 (88%) Strand = Plus / Plus Query: 629 catggaggacttcatcacctgggtggattcctcgaagatcaag 671 |||||||||||| ||||||||||||| || || ||||||||| Sbjct: 469 catggaggactttgtcacctgggtggactcatccaagatcaag 511
>ref|XM_753393.1| Ustilago maydis 521 hypothetical protein (UM02339.1) partial mRNA Length = 753 Score = 46.1 bits (23), Expect = 0.24 Identities = 35/39 (89%) Strand = Plus / Plus Query: 618 gtgaccaggaacatggaggacttcatcacctgggtggat 656 ||||| ||||||||||||||||| | |||||||||||| Sbjct: 445 gtgactaggaacatggaggactttgttacctgggtggat 483
>dbj|AK004456.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1190002L16 product:Hypothetical protein (BRMS2) (Similar to mitochondrial ribosomal protein S4) (Chromosome 15 open reading frame 12) homolog [Homo sapiens], full insert sequence Length = 925 Score = 46.1 bits (23), Expect = 0.24 Identities = 38/43 (88%) Strand = Plus / Plus Query: 629 catggaggacttcatcacctgggtggattcctcgaagatcaag 671 |||||||||||| ||||||||||||| || || ||||||||| Sbjct: 493 catggaggactttgtcacctgggtggactcatccaagatcaag 535
>dbj|AK030236.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933427G23 product:HYPOTHETICAL 21.8 KDA PROTEIN (BRMS2) (SIMILAR TO MITOCHONDRIAL RIBOSOMAL PROTEIN S4) homolog [Homo sapiens], full insert sequence Length = 2516 Score = 46.1 bits (23), Expect = 0.24 Identities = 38/43 (88%) Strand = Plus / Plus Query: 629 catggaggacttcatcacctgggtggattcctcgaagatcaag 671 |||||||||||| ||||| |||||||||| || ||||||||| Sbjct: 735 catggaggactttgtcaccggggtggattcatccaagatcaag 777
>emb|AJ309378.1|ABE309378 Atropa belladonna partial mRNA for putative ribosomal-like protein Length = 373 Score = 46.1 bits (23), Expect = 0.24 Identities = 41/47 (87%) Strand = Plus / Plus Query: 606 ccagccttccttgtgaccaggaacatggaggacttcatcacctgggt 652 ||||| || |||||||| || || ||||||||||||||||| ||||| Sbjct: 60 ccagcatttcttgtgacaagaaatatggaggacttcatcacttgggt 106
>tpg|BK001009.1| TPA_exp: Arabidopsis thaliana PDR10 ABC transporter (At3g30842) gene, complete cds Length = 6474 Score = 44.1 bits (22), Expect = 0.94 Identities = 22/22 (100%) Strand = Plus / Plus Query: 948 aaaaataatactccctttgttc 969 |||||||||||||||||||||| Sbjct: 905 aaaaataatactccctttgttc 926
>ref|XM_001074037.1| PREDICTED: Rattus norvegicus IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast) (predicted) (Imp3_predicted), mRNA Length = 923 Score = 44.1 bits (22), Expect = 0.94 Identities = 31/34 (91%) Strand = Plus / Plus Query: 181 ggaagctcaagttccatgagaggaagctgctgaa 214 ||||||| |||||||||||| |||||||||||| Sbjct: 48 ggaagcttaagttccatgagcagaagctgctgaa 81
>ref|XM_236276.4| PREDICTED: Rattus norvegicus IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast) (predicted) (Imp3_predicted), mRNA Length = 923 Score = 44.1 bits (22), Expect = 0.94 Identities = 31/34 (91%) Strand = Plus / Plus Query: 181 ggaagctcaagttccatgagaggaagctgctgaa 214 ||||||| |||||||||||| |||||||||||| Sbjct: 48 ggaagcttaagttccatgagcagaagctgctgaa 81
>ref|NM_001004848.1| Xenopus tropicalis MGC69249 protein (MGC69249), mRNA gb|BC074666.1| Xenopus tropicalis MGC69249 protein, mRNA (cDNA clone MGC:69249 IMAGE:5308048), complete cds Length = 1391 Score = 44.1 bits (22), Expect = 0.94 Identities = 61/74 (82%) Strand = Plus / Plus Query: 600 accgatccagccttccttgtgaccaggaacatggaggacttcatcacctgggtggattcc 659 ||||| ||||| ||||| || || || || |||||||| || | ||||||||||||||| Sbjct: 591 accgacccagctttcctggttacaagaaatatggaggattttgtgacctgggtggattcc 650 Query: 660 tcgaagatcaagaa 673 || ||||| ||||| Sbjct: 651 tccaagattaagaa 664
>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0065A15, complete sequence Length = 168806 Score = 44.1 bits (22), Expect = 0.94 Identities = 22/22 (100%) Strand = Plus / Plus Query: 947 caaaaataatactccctttgtt 968 |||||||||||||||||||||| Sbjct: 117055 caaaaataatactccctttgtt 117076
>gb|AC115120.4| Mus musculus BAC clone RP23-116M23 from 16, complete sequence Length = 222066 Score = 44.1 bits (22), Expect = 0.94 Identities = 22/22 (100%) Strand = Plus / Minus Query: 783 tgtaatattttttaaacctaat 804 |||||||||||||||||||||| Sbjct: 171030 tgtaatattttttaaacctaat 171009
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 44.1 bits (22), Expect = 0.94 Identities = 22/22 (100%) Strand = Plus / Plus Query: 947 caaaaataatactccctttgtt 968 |||||||||||||||||||||| Sbjct: 19633980 caaaaataatactccctttgtt 19634001
>dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1399_D07, complete sequence Length = 65000 Score = 44.1 bits (22), Expect = 0.94 Identities = 22/22 (100%) Strand = Plus / Plus Query: 947 caaaaataatactccctttgtt 968 |||||||||||||||||||||| Sbjct: 43462 caaaaataatactccctttgtt 43483
>dbj|AP002043.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MJI6 Length = 83912 Score = 44.1 bits (22), Expect = 0.94 Identities = 22/22 (100%) Strand = Plus / Minus Query: 948 aaaaataatactccctttgttc 969 |||||||||||||||||||||| Sbjct: 21778 aaaaataatactccctttgttc 21757
>gb|AC121766.2| Homo sapiens chromosome 3 clone RP11-245G23, complete sequence Length = 175088 Score = 44.1 bits (22), Expect = 0.94 Identities = 22/22 (100%) Strand = Plus / Minus Query: 869 tgctatagaatgcaaatgccta 890 |||||||||||||||||||||| Sbjct: 68911 tgctatagaatgcaaatgccta 68890
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 478 tgagcgctttcgccaggcgga 498 ||||||||||||||||||||| Sbjct: 1320095 tgagcgctttcgccaggcgga 1320115
>emb|AL954137.18| Zebrafish DNA sequence from clone CH211-222L21 in linkage group 11, complete sequence Length = 222163 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 910 cttctgttttgcattgcaaat 930 ||||||||||||||||||||| Sbjct: 29794 cttctgttttgcattgcaaat 29814
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome Length = 1767403 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 815 aatatgttaagatagttatctgttg 839 |||||||||||| |||||||||||| Sbjct: 584617 aatatgttaagagagttatctgttg 584641
>emb|AL607088.26| Mouse DNA sequence from clone RP23-13A13 on chromosome 4, complete sequence Length = 103925 Score = 42.1 bits (21), Expect = 3.7 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 176 gatgaggaagctcaag-ttccatgagaggaagc 207 |||||||||||||||| ||||| |||||||||| Sbjct: 9808 gatgaggaagctcaagtttccaagagaggaagc 9840 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 174,326,806 Number of extensions: 9444234 Number of successful extensions: 202870 Number of sequences better than 10.0: 50 Number of HSP's gapped: 202865 Number of HSP's successfully gapped: 72 Length of query: 984 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 961 Effective length of database: 18,503,978,556 Effective search space: 17782323392316 Effective search space used: 17782323392316 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)