ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf30m09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC131762.2| Mus musculus BAC clone RP24-228J18 from chromosom... 46 0.15
2gb|AC153362.4| Mus musculus BAC clone RP23-92N20 from chromosome... 42 2.3
3emb|AJ012283.1|MVI012283 Myxoma virus mt6 gene 42 2.3
4gb|AF170726.2| Myxoma virus strain Lausanne, complete genome 42 2.3
5emb|AL844901.8| Mouse DNA sequence from clone RP23-158F12 on chr... 42 2.3
6gb|AC142105.7| Mus musculus BAC clone RP24-240E7 from chromosome... 42 2.3
7gb|M81919.1|MYXMT7G Myxoma virus MT-7 gene, complete cds 42 2.3
8gb|CP000481.1| Acidothermus cellulolyticus 11B, complete genome 40 9.0
9gb|AC121001.5| Rattus norvegicus BAC CH230-189D6 () complete se... 40 9.0
10gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 9.0
11gb|AC144794.2| Mus musculus BAC clone RP24-463B6 from chromosome... 40 9.0
12gb|AC123950.3| Mus musculus BAC clone RP23-162I9 from chromosome... 40 9.0
13gb|AC122399.4| Mus musculus BAC clone RP24-92B2 from chromosome ... 40 9.0
14dbj|AP002086.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, co... 40 9.0
15dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
16gb|AC160634.2| Mus musculus BAC clone RP23-429J21 from chromosom... 40 9.0
17gb|AC175058.1| Mus musculus BAC clone RP23-210C4 from chromosome... 40 9.0
18dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
19emb|BX000537.11| Mouse DNA sequence from clone RP24-392J24 on ch... 40 9.0
20emb|AL928539.4| Mouse DNA sequence from clone RP23-152D24 on chr... 40 9.0 
>gb|AC131762.2| Mus musculus BAC clone RP24-228J18 from chromosome 12, complete sequence
          Length = 157435
 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 56     acagctcacaaggcagtaagccc 78
              |||||||||||||||||||||||
Sbjct: 126253 acagctcacaaggcagtaagccc 126231
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>gb|AC153362.4| Mus musculus BAC clone RP23-92N20 from chromosome 10, complete sequence
          Length = 214898

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 501    atgttttactactctgaataa 521
              |||||||||||||||||||||
Sbjct: 160781 atgttttactactctgaataa 160801
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>emb|AJ012283.1|MVI012283 Myxoma virus mt6 gene
          Length = 1656

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 88  acggacgatggcgtccttcgc 108
           |||||||||||||||||||||
Sbjct: 260 acggacgatggcgtccttcgc 280
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>gb|AF170726.2| Myxoma virus strain Lausanne, complete genome
          Length = 161773

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 88   acggacgatggcgtccttcgc 108
            |||||||||||||||||||||
Sbjct: 7777 acggacgatggcgtccttcgc 7757



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 88     acggacgatggcgtccttcgc 108
              |||||||||||||||||||||
Sbjct: 153997 acggacgatggcgtccttcgc 154017
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>emb|AL844901.8| Mouse DNA sequence from clone RP23-158F12 on chromosome 2, complete
             sequence
          Length = 200364

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 562   ggttcacaaataaagatctat 582
             |||||||||||||||||||||
Sbjct: 39689 ggttcacaaataaagatctat 39709
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>gb|AC142105.7| Mus musculus BAC clone RP24-240E7 from chromosome 10, complete
            sequence
          Length = 163869

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 501  atgttttactactctgaataa 521
            |||||||||||||||||||||
Sbjct: 4910 atgttttactactctgaataa 4930
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>gb|M81919.1|MYXMT7G Myxoma virus MT-7 gene, complete cds
          Length = 1877

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 88   acggacgatggcgtccttcgc 108
            |||||||||||||||||||||
Sbjct: 1454 acggacgatggcgtccttcgc 1474
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>gb|CP000481.1| Acidothermus cellulolyticus 11B, complete genome
          Length = 2443540

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 151     catcgtttccgccgtgttca 170
               ||||||||||||||||||||
Sbjct: 1974741 catcgtttccgccgtgttca 1974760
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>gb|AC121001.5| Rattus norvegicus  BAC CH230-189D6 () complete sequence
          Length = 212045

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 512   ctctgaataaaattggctat 531
             ||||||||||||||||||||
Sbjct: 60319 ctctgaataaaattggctat 60338
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 151     catcgtttccgccgtgttca 170
               ||||||||||||||||||||
Sbjct: 4388097 catcgtttccgccgtgttca 4388078
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>gb|AC144794.2| Mus musculus BAC clone RP24-463B6 from chromosome 18, complete sequence
          Length = 152588

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   ctctgaataaaattggctat 531
             ||||||||||||||||||||
Sbjct: 30652 ctctgaataaaattggctat 30633
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>gb|AC123950.3| Mus musculus BAC clone RP23-162I9 from chromosome 18, complete sequence
          Length = 181095

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 512   ctctgaataaaattggctat 531
             ||||||||||||||||||||
Sbjct: 21295 ctctgaataaaattggctat 21314
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>gb|AC122399.4| Mus musculus BAC clone RP24-92B2 from chromosome 17, complete sequence
          Length = 184002

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 387    gaacaatggaaggattacac 406
              ||||||||||||||||||||
Sbjct: 125873 gaacaatggaaggattacac 125892
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>dbj|AP002086.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence
          Length = 217594

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 161    gccgtgttcatgagcagttccgtc 184
              ||||||||||||||||| ||||||
Sbjct: 181087 gccgtgttcatgagcagatccgtc 181110
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 95       atggcgtccttcgctagagctgcccgtt 122
                ||||||||||||||| || |||||||||
Sbjct: 22854341 atggcgtccttcgctcgatctgcccgtt 22854368
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>gb|AC160634.2| Mus musculus BAC clone RP23-429J21 from chromosome 12, complete
             sequence
          Length = 176160

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 513   tctgaataaaattggctatg 532
             ||||||||||||||||||||
Sbjct: 98718 tctgaataaaattggctatg 98699
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>gb|AC175058.1| Mus musculus BAC clone RP23-210C4 from chromosome 17, complete sequence
          Length = 218488

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 387    gaacaatggaaggattacac 406
              ||||||||||||||||||||
Sbjct: 151795 gaacaatggaaggattacac 151776
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>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0502H06
          Length = 165630

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 95    atggcgtccttcgctagagctgcccgtt 122
             ||||||||||||||| || |||||||||
Sbjct: 29163 atggcgtccttcgctcgatctgcccgtt 29190
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>emb|BX000537.11| Mouse DNA sequence from clone RP24-392J24 on chromosome X, complete
              sequence
          Length = 162188

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 512    ctctgaataaaattggctat 531
              ||||||||||||||||||||
Sbjct: 151617 ctctgaataaaattggctat 151636
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>emb|AL928539.4| Mouse DNA sequence from clone RP23-152D24 on chromosome X, complete
             sequence
          Length = 165789

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 510   tactctgaataaaattggct 529
             ||||||||||||||||||||
Sbjct: 19393 tactctgaataaaattggct 19374


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 82,799,992
Number of extensions: 3792911
Number of successful extensions: 77465
Number of sequences better than 10.0: 20
Number of HSP's gapped: 77465
Number of HSP's successfully gapped: 21
Length of query: 613
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 591
Effective length of database: 18,508,616,841
Effective search space: 10938592553031
Effective search space used: 10938592553031
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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