>LOC_Os08g25080:12008.t02277:unspliced-genomic expressed protein|
Length = 3483
Score = 91.3 bits (193), Expect(6) = 7e-60
Identities = 39/48 (81%), Positives = 42/48 (87%)
Frame = +1 / +1
Query: 340 VSVVQDQRQESAKSDDENKANDGEPSSTETEQSIGKTNIDDILMDESQ 483
VSVV+D+RQES KSDDENKANDGEPSS ETE S GKTNI+D MDESQ
Sbjct: 2521 VSVVEDERQESGKSDDENKANDGEPSSAETEPSNGKTNINDTPMDESQ 2664
Score = 79.0 bits (166), Expect(6) = 7e-60
Identities = 29/35 (82%), Positives = 32/35 (91%)
Frame = +1 / +1
Query: 79 MEGVGARLGRSSARYGPAMTFTGPVRKWRKEWVPI 183
MEGVGARLGR+SARYG TFTGPVRKWRK+WVP+
Sbjct: 85 MEGVGARLGRTSARYGTTTTFTGPVRKWRKDWVPV 189
Score = 61.6 bits (128), Expect(6) = 7e-60
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +3 / +2
Query: 615 HRVRTEHRLKRKSVTPDLEMRM*LAASFIPCILYY 719
+ TE+RLKRKSV PDLEMRM* AASFIP ILYY
Sbjct: 3233 NNTHTENRLKRKSVAPDLEMRM*PAASFIPWILYY 3337
Score = 42.8 bits (87), Expect(6) = 7e-60
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +1 / +1
Query: 226 RGNNLILFKWTPFNGSN 276
RGNNL+LFKWTP NG+N
Sbjct: 256 RGNNLVLFKWTPMNGAN 306
Score = 37.3 bits (75), Expect(6) = 7e-60
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +3 / +2
Query: 519 GGTDLNLNLGLKDP 560
GGTDLNLNLGLKDP
Sbjct: 3149 GGTDLNLNLGLKDP 3190
Score = 26.3 bits (51), Expect(6) = 7e-60
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3 / +3
Query: 303 GEDGHEKAAVRAG 341
G +GHE AAVRAG
Sbjct: 363 GGEGHETAAVRAG 401
Score = 73.0 bits (153), Expect(7) = 6e-49
Identities = 33/53 (62%), Positives = 38/53 (71%)
Frame = -3 / -3
Query: 490 LMPGIHP*VYHRY*FSQ*TALFP*MKVLHH*PCSHHQIWQILAFDLELQKPAR 332
++P IHP VYH Y*F * A F M VLHH P H QI+QILAF L+LQKPA+
Sbjct: 2671 ILPEIHPLVYH*Y*FFH*MAQFRRMMVLHHLPYFHRQIFQILAFHLQLQKPAK 2513
Score = 65.7 bits (137), Expect(7) = 6e-49
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = -2 / -2
Query: 179 GTHSFRHFLTGPVNVIAGP*RADERPNRAPTPSM 78
GT S RHFLTGPVNV+ P*RA+ RP+RAPTPSM
Sbjct: 185 GTQSLRHFLTGPVNVVVVP*RAEVRPSRAPTPSM 84
Score = 59.3 bits (123), Expect(7) = 6e-49
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = -3 / -1
Query: 718 **RIQGINEAASYILISRSGVTDFLFNLCSVRTLW 614
**RIQGINEAA YILISRSG TDFLF+L SV L+
Sbjct: 3336 **RIQGINEAAGYILISRSGATDFLFSLFSVCVLF 3232
Score = 36.8 bits (74), Expect(7) = 6e-49
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -3 / -1
Query: 559 GSFRPRFKFRSVPP 518
GSFRP+FKFRSVPP
Sbjct: 3189 GSFRPKFKFRSVPP 3148
Score = 30.9 bits (61), Expect(7) = 6e-49
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -3 / -3
Query: 340 PARTAAFSWPSSPVPSAP 287
PARTAA SWPS P P
Sbjct: 400 PARTAAVSWPSPPPRRRP 347
Score = 30.9 bits (61), Expect(7) = 6e-49
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1 / -1
Query: 276 VGAVKRGPLEQDEVISARS 220
VGAV RGPLE+ E++ A S
Sbjct: 306 VGAVHRGPLEEHEIVPAGS 250
Score = 22.1 bits (42), Expect(7) = 6e-49
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3 / -2
Query: 508 QNLEPHLMP 482
QN+ PHLMP
Sbjct: 3137 QNIGPHLMP 3111
Score = 63.4 bits (132), Expect(6) = 4e-31
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = -1 / -1
Query: 483 LGFIHKYIIDISFPNRLLCFRR*RFSIISLVLIIRFGRFLPLILNYRN 340
L FIH II+ISF R L F * FSII L+ I+RF RFLP I NYRN
Sbjct: 2664 LRFIHWCIINISFSIRWLSFGG*WFSIICLIFIVRFSRFLPFIFNYRN 2521
Score = 57.0 bits (118), Expect(6) = 4e-31
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = -2 / -3
Query: 719 VVKNTRNK*SRQLHSHLEVRGNRFPLQSVFC 627
+VKN RNK*S +LHSHL+VR RFPLQ +FC
Sbjct: 3337 IVKNPRNK*SSRLHSHLKVRSYRFPLQPIFC 3245
Score = 34.5 bits (69), Expect(6) = 4e-31
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -1 / -1
Query: 141 ERHRGAVTGRRTP*SRANTLHGK 73
ER RGAV GR P RA+ LHG+
Sbjct: 147 ERRRGAVAGRGAPEPRAHALHGE 79
Score = 30.4 bits (60), Expect(6) = 4e-31
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2 / -2
Query: 275 LEPLNGVHLNRMRLFPRD 222
L P GVHL RLFPRD
Sbjct: 305 LAPFIGVHLKSTRLFPRD 252
Score = 28.1 bits (55), Expect(6) = 4e-31
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1 / -2
Query: 561 RGLSDPGSNLGRFHQ 517
+G SDP NLGRFH+
Sbjct: 3191 QGPSDPSLNLGRFHR 3147
Score = 25.4 bits (49), Expect(6) = 4e-31
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2 / -2
Query: 341 TGTYRRLLVAVFAGAVCSSSPSLEP 267
TGTYRR VA + A +++ + P
Sbjct: 401 TGTYRRRFVAFSSSAAAAAAAAWSP 327
Score = 64.8 bits (135), Expect(5) = 9e-30
Identities = 30/48 (62%), Positives = 34/48 (70%)
Frame = +2 / +2
Query: 341 FL*FKIKGKNLPNLMMRTRLMMENLHLRKQSSLLGKLISMIYLWMNPR 484
FL* K+KGKNL NL M+ R MMEN H K S L+ KLI MI+ WMN R
Sbjct: 2522 FL*LKMKGKNLENLTMKIRQMMENHHPPKLSHLMEKLILMIHQWMNLR 2665
Score = 49.6 bits (102), Expect(5) = 9e-30
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = +3 / +3
Query: 78 HGGCWRAIRAFVGPLRPRDDVHRAR*EVAEGM 173
HGG RA RA +GPLR DDVH AR EVA+G+
Sbjct: 84 HGGRGRAARAHLGPLRHHDDVHGARQEVAQGL 179
Score = 46.9 bits (96), Expect(5) = 9e-30
Identities = 23/34 (67%), Positives = 25/34 (73%)
Frame = +2 / +1
Query: 617 QGSNRTQIEEEICYP*PRDENVTGGFIYSLYSLL 718
Q ++R EEEIC *P DENVTG FIYSL SLL
Sbjct: 3235 QHTHRK*AEEEICSS*P*DENVTGCFIYSLDSLL 3336
Score = 29.5 bits (58), Expect(5) = 9e-30
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2 / +1
Query: 521 WNRPKFEPGSERP 559
WNRPKF+ GSE P
Sbjct: 3151 WNRPKFKLGSEGP 3189
Score = 24.9 bits (48), Expect(5) = 9e-30
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2 / +2
Query: 221 DLAEITSSCSSGPRLTAPT 277
D A S SSGPR TAPT
Sbjct: 251 DPAGTISCSSSGPR*TAPT 307
Score = 57.9 bits (120), Expect(3) = 3e-11
Identities = 32/50 (64%), Positives = 36/50 (72%)
Frame = +3 / +3
Query: 336 AGFCSSRSKARICQI***EQG**WRTFIYGNRAVYWEN*YR*YTYG*IPG 485
AGFCS R KARI +I* *+ G *WRT I N A+ W+N*Y *YT G*I G
Sbjct: 2517 AGFCS*R*KARIWKI*R*K*GK*WRTIIRRN*AI*WKN*Y**YTNG*ISG 2666
Score = 28.6 bits (56), Expect(3) = 3e-11
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 514 LLVEPT*I*TWV*KT 558
+ VEPT*I*TWV*+T
Sbjct: 3144 MAVEPT*I*TWV*RT 3188
Score = 26.7 bits (52), Expect(3) = 3e-11
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1 / +3
Query: 616 TGFEQNTD*RGNLLPLTSR*ECN 684
T Q *RGNL LT R*ECN
Sbjct: 3234 TTHTQKIG*RGNL*LLTLR*ECN 3302
Score = 27.6 bits (54), Expect(4) = 0.004
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -1 / -2
Query: 717 SKEYKE*MKPPVTF 676
SKE KE*MK PVTF
Sbjct: 3335 SKESKE*MKQPVTF 3294
Score = 26.7 bits (52), Expect(4) = 0.004
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2 / -2
Query: 452 LVFPIDCSVSVDEG 411
LVFP+D SVS D+G
Sbjct: 2633 LVFPLDGSVSADDG 2592
Score = 25.4 bits (49), Expect(4) = 0.004
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3 / -3
Query: 124 RNGPTNALIARQHPPW 77
R+GP A AR PPW
Sbjct: 130 RSGPRCARAARPRPPW 83
Score = 23.1 bits (44), Expect(4) = 0.004
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -2 / -3
Query: 557 VFQTQVQI*VGSTNKF 510
V QTQV I*VGST F
Sbjct: 3187 VLQTQV*I*VGSTAIF 3140
>LOC_Os09g11240:12009.t00914:unspliced-genomic expressed protein|
Length = 2798
Score = 41.4 bits (84), Expect(4) = 4e-13
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1 / +1
Query: 130 AMTFTGPVRKWRKEWVPI 183
A +F+GPVRKWRK WVPI
Sbjct: 208 ASSFSGPVRKWRKAWVPI 261
Score = 33.1 bits (66), Expect(4) = 4e-13
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +1 / +1
Query: 79 MEGVGARLGRSSARYGP 129
M+ VGARL RSS RYGP
Sbjct: 145 MDTVGARLSRSSTRYGP 195
Score = 32.7 bits (65), Expect(4) = 4e-13
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1 / +1
Query: 226 RGNNLILFKWTPFNGSNEG 282
RGN ++LF+W P NG G
Sbjct: 313 RGNKVVLFRWAPVNGGAAG 369
Score = 30.9 bits (61), Expect(4) = 4e-13
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 519 GGTDLNLNLGLKDP 560
G T+LNLNLGL+DP
Sbjct: 2321 GSTELNLNLGLEDP 2362
Score = 29.9 bits (59), Expect(3) = 7e-05
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2 / -1
Query: 182 MGTHSFRHFLTGPV 141
MGT + RHFLTGP+
Sbjct: 260 MGTQALRHFLTGPL 219
Score = 26.3 bits (51), Expect(3) = 7e-05
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2 / -1
Query: 281 PSLEPLNGVHLNRMRLFP 228
P+ P G HLN LFP
Sbjct: 368 PAAPPFTGAHLNSTTLFP 315
Score = 26.3 bits (51), Expect(3) = 7e-05
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2 / -1
Query: 128 GP*RADERPNRAPTPSM 78
GP R DER RAPT S+
Sbjct: 194 GPYRVDERLRRAPTVSI 144
>LOC_Os03g19190:12003.t01685:unspliced-genomic BRCA1 C Terminus domain containing protein, expressed|
Length = 7338
Score = 31.3 bits (62), Expect = 9.3
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +1 / +1
Query: 352 QDQRQESAKSDDENKANDGEPSSTETEQSIGKTNIDDILMDESQASDEVRDSGN 513
Q++ + A+ DG P +TE + K DI + S+ S V SGN
Sbjct: 4375 QNKDGDYAQDSGNALNQDGSPLMRKTENVLAKVRTSDISLHSSRKSKLVPSSGN 4536
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 287,461,271
Number of extensions: 4047129
Number of successful extensions: 15757
Number of sequences better than 10.0: 25
Length of query: 283
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 234
Effective length of database: 52,856,264
Effective search space: 12368365776
Effective search space used: 12368365776
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)