ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf27i05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os03g22519:12003.t05692:unspliced-genomic expressed protein 33 1.2
2LOC_Os10g28240:12010.t02178:unspliced-genomic calcium-transp... 28 1.3
3LOC_Os03g30740:12003.t02679:unspliced-genomic expressed protein 24 2.2
4LOC_Os06g10170:12006.t00895:unspliced-genomic monooxygenase/... 31 3.2
5LOC_Os01g39270:12001.t03458:unspliced-genomic 2-hydroxy-3-ox... 31 3.2
6LOC_Os03g47820:12003.t04144:unspliced-genomic PINHEAD protei... 31 4.4
7LOC_Os01g28310:12001.t02527:unspliced-genomic Transposable e... 31 4.4
8LOC_Os10g31290:12010.t02455:unspliced-genomic expressed protein 30 6.0
9LOC_Os03g50570:12003.t04397:unspliced-genomic expressed protein 30 6.0
10LOC_Os10g20390:12010.t01532:unspliced-genomic transparent te... 30 6.1
11LOC_Os10g11180:12010.t00919:unspliced-genomic retrotransposo... 30 8.4
12LOC_Os06g34710:12006.t03168:unspliced-genomic expressed protein 30 8.4
13LOC_Os04g08749:12004.t005522:unspliced-genomic expressed pro... 30 8.4

>LOC_Os03g22519:12003.t05692:unspliced-genomic expressed protein|
          Length = 601
 Score = 32.7 bits (65), Expect = 1.2
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2 / -3

                                                      
Query: 62  YAEDSDLYKYTHLILTEQGEISLEQKNVTVNKSFSGYVSQWNE 190
           + + +D +K  ++  +  G  S+ Q++  +NKSF+G  S W E
Sbjct: 554 FNKSADSHKKININKSFTGSKSISQQSACINKSFTGSKSIWRE 426



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>LOC_Os10g28240:12010.t02178:unspliced-genomic calcium-transporting ATPase 13, plasma membrane-type, putative,|
            expressed
          Length = 3377

 Score = 27.6 bits (54), Expect(2) = 1.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2 / +2

                                  
Query: 110  EQGEISLEQKNVTVNKSFSGYV 175
            EQG    +++NVT N  FSG V
Sbjct: 1280 EQGNALFDKRNVTFNAVFSGLV 1345



 Score = 25.4 bits (49), Expect(2) = 1.3
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +2 / +3

                                
Query: 17   AGPPPEKWQSVVGRWYAEDS 76
            + PP  +W +   RW++  S
Sbjct: 1041 SSPPASRWSTATARWWSPPS 1100



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>LOC_Os03g30740:12003.t02679:unspliced-genomic expressed protein|
          Length = 6952

 Score = 24.4 bits (47), Expect(2) = 2.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1 / -1

                              
Query: 349  LYK*HSLI*YNFLVSHHY 296
            LY  H  + YN +VSH+Y
Sbjct: 1990 LYVAHENLTYNLVVSHYY 1937



 Score = 24.4 bits (47), Expect(2) = 2.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1 / -1

                                   
Query: 313  LVSHHYDSVHFHFHFRLVFPWHF 245
            LV  HY S+    H + +  WHF
Sbjct: 1957 LVVSHYYSIMTPLHKKCISLWHF 1889



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>LOC_Os06g10170:12006.t00895:unspliced-genomic monooxygenase/ oxidoreductase, putative, expressed|
          Length = 3648

 Score = 31.3 bits (62), Expect = 3.2
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = -2 / -3

                                                                        
Query: 228  FLKHHKKVDSKESSFH*ET*PENDLFTVTFFCSRLISPCSVRIK*VYLYKSESSAYHRPT 49
            F  HH  +  K        *P+ + +T T FC R +   +      Y     SS+Y  PT
Sbjct: 3592 FQTHHTCISRKGIVLSVRF*PDGNRYTRTMFCRRTMGDATKFWNNAYFLDLFSSSYRSPT 3413



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>LOC_Os01g39270:12001.t03458:unspliced-genomic 2-hydroxy-3-oxopropionate reductase, putative, expressed|
          Length = 2817

 Score = 31.3 bits (62), Expect = 3.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1 / +1

                              
Query: 301 HYDSVHFHFHFRLVFPWHF 245
           H   +HFHFHF   F +HF
Sbjct: 592 HPHPLHFHFHFHFHFHFHF 648



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>LOC_Os03g47820:12003.t04144:unspliced-genomic PINHEAD protein, putative, expressed|
          Length = 7977

 Score = 30.9 bits (61), Expect = 4.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2 / +1

                                           
Query: 93   VYLYKSESSAYHRPTTLCHFSGGGPACGQHI 1
            V+L K E   +H+ +T+C FS  G   G +I
Sbjct: 2269 VFLLKEEKCKFHKFSTICCFSDNGYQSGLYI 2361



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>LOC_Os01g28310:12001.t02527:unspliced-genomic Transposable element protein, putative, Transposase_24|
          Length = 3378

 Score = 30.9 bits (61), Expect = 4.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2 / +3

                                      
Query: 35   KWQSVVGRWYAEDSDLYKYTHLILTE 112
            +W ++V  WY+EDS +  Y   ++TE
Sbjct: 2343 QWATLVSYWYSEDSKVNIYWDFLVTE 2420



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>LOC_Os10g31290:12010.t02455:unspliced-genomic expressed protein|
          Length = 6779

 Score = 30.4 bits (60), Expect = 6.0
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3 / -1

                                 
Query: 174  FLNGMKILLSRLFCGALGNDL 236
            FLN ++++LSR+FC  L ND+
Sbjct: 2915 FLNIVELILSRMFCKKLYNDI 2853



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>LOC_Os03g50570:12003.t04397:unspliced-genomic expressed protein|
          Length = 5281

 Score = 30.4 bits (60), Expect = 6.0
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = +3 / -3

                              
Query: 15   KLVLRLKNGRVLLVDGML 68
            +L+ RL+NGR LL+DGML
Sbjct: 2219 ELLNRLQNGRALLLDGML 2166



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>LOC_Os10g20390:12010.t01532:unspliced-genomic transparent testa 12 protein, putative, expressed|
          Length = 3278

 Score = 30.4 bits (60), Expect = 6.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1 / +1

                                                 
Query: 289  VHFHFHFRLVFPWHFFKDKSFPKAPQKSRLKRIFIPL 179
            +HF + F  V    F K   FPK  ++  LK I +P+
Sbjct: 2551 LHFLYFFCGVVGLRFLKSSKFPKISERRYLKSINLPI 2661



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>LOC_Os10g11180:12010.t00919:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 3139

 Score = 29.9 bits (59), Expect = 8.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2 / -2

                                             
Query: 155  KSFSGYVSQWNEDSFESTFLWCFRKRFIFEEMP 253
            K FSG +  +  D F+S   W F+K  IF E P
Sbjct: 1263 KDFSGLLVSFMVDVFKSEVQWIFQKC*IFIEEP 1165



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>LOC_Os06g34710:12006.t03168:unspliced-genomic expressed protein|
          Length = 7832

 Score = 29.9 bits (59), Expect = 8.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2 / -3

                                             
Query: 141  FFCSRLISPCSVRIK*VYLYKSESSAYHRPTTL 43
            FF   L+ PC+  ++ +Y + + +S  H+ TTL
Sbjct: 4107 FFIHNLLFPCTPLVQLLYPFVTSTSPSHKSTTL 4009



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>LOC_Os04g08749:12004.t005522:unspliced-genomic expressed protein|
          Length = 3233

 Score = 29.9 bits (59), Expect = 8.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1 / +3

                                   
Query: 310  VSHHYDSVHFHFHFRLVFPWHFF 242
            VSH +  V ++F F  ++ WH F
Sbjct: 2067 VSHFFPMVTYYFRFVFLYMWHLF 2135


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 127,224,746
Number of extensions: 1659390
Number of successful extensions: 7071
Number of sequences better than 10.0: 13
Length of query: 128
Length of database: 55,613,886
Length adjustment: 47
Effective length of query: 81
Effective length of database: 52,968,820
Effective search space: 4290474420
Effective search space used: 4290474420
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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