| Clone Name | FLbaf27i05 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os03g22519:12003.t05692:unspliced-genomic expressed protein| Length = 601 Score = 32.7 bits (65), Expect = 1.2 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +2 / -3 Query: 62 YAEDSDLYKYTHLILTEQGEISLEQKNVTVNKSFSGYVSQWNE 190 + + +D +K ++ + G S+ Q++ +NKSF+G S W E Sbjct: 554 FNKSADSHKKININKSFTGSKSISQQSACINKSFTGSKSIWRE 426
>LOC_Os10g28240:12010.t02178:unspliced-genomic calcium-transporting ATPase 13, plasma membrane-type, putative,| expressed Length = 3377 Score = 27.6 bits (54), Expect(2) = 1.3 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +2 / +2 Query: 110 EQGEISLEQKNVTVNKSFSGYV 175 EQG +++NVT N FSG V Sbjct: 1280 EQGNALFDKRNVTFNAVFSGLV 1345 Score = 25.4 bits (49), Expect(2) = 1.3 Identities = 6/20 (30%), Positives = 11/20 (55%) Frame = +2 / +3 Query: 17 AGPPPEKWQSVVGRWYAEDS 76 + PP +W + RW++ S Sbjct: 1041 SSPPASRWSTATARWWSPPS 1100
>LOC_Os03g30740:12003.t02679:unspliced-genomic expressed protein| Length = 6952 Score = 24.4 bits (47), Expect(2) = 2.2 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -1 / -1 Query: 349 LYK*HSLI*YNFLVSHHY 296 LY H + YN +VSH+Y Sbjct: 1990 LYVAHENLTYNLVVSHYY 1937 Score = 24.4 bits (47), Expect(2) = 2.2 Identities = 9/23 (39%), Positives = 12/23 (52%) Frame = -1 / -1 Query: 313 LVSHHYDSVHFHFHFRLVFPWHF 245 LV HY S+ H + + WHF Sbjct: 1957 LVVSHYYSIMTPLHKKCISLWHF 1889
>LOC_Os06g10170:12006.t00895:unspliced-genomic monooxygenase/ oxidoreductase, putative, expressed| Length = 3648 Score = 31.3 bits (62), Expect = 3.2 Identities = 17/60 (28%), Positives = 24/60 (40%) Frame = -2 / -3 Query: 228 FLKHHKKVDSKESSFH*ET*PENDLFTVTFFCSRLISPCSVRIK*VYLYKSESSAYHRPT 49 F HH + K *P+ + +T T FC R + + Y SS+Y PT Sbjct: 3592 FQTHHTCISRKGIVLSVRF*PDGNRYTRTMFCRRTMGDATKFWNNAYFLDLFSSSYRSPT 3413
>LOC_Os01g39270:12001.t03458:unspliced-genomic 2-hydroxy-3-oxopropionate reductase, putative, expressed| Length = 2817 Score = 31.3 bits (62), Expect = 3.2 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -1 / +1 Query: 301 HYDSVHFHFHFRLVFPWHF 245 H +HFHFHF F +HF Sbjct: 592 HPHPLHFHFHFHFHFHFHF 648
>LOC_Os03g47820:12003.t04144:unspliced-genomic PINHEAD protein, putative, expressed| Length = 7977 Score = 30.9 bits (61), Expect = 4.4 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -2 / +1 Query: 93 VYLYKSESSAYHRPTTLCHFSGGGPACGQHI 1 V+L K E +H+ +T+C FS G G +I Sbjct: 2269 VFLLKEEKCKFHKFSTICCFSDNGYQSGLYI 2361
>LOC_Os01g28310:12001.t02527:unspliced-genomic Transposable element protein, putative, Transposase_24| Length = 3378 Score = 30.9 bits (61), Expect = 4.4 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +2 / +3 Query: 35 KWQSVVGRWYAEDSDLYKYTHLILTE 112 +W ++V WY+EDS + Y ++TE Sbjct: 2343 QWATLVSYWYSEDSKVNIYWDFLVTE 2420
>LOC_Os10g31290:12010.t02455:unspliced-genomic expressed protein| Length = 6779 Score = 30.4 bits (60), Expect = 6.0 Identities = 11/21 (52%), Positives = 17/21 (80%) Frame = +3 / -1 Query: 174 FLNGMKILLSRLFCGALGNDL 236 FLN ++++LSR+FC L ND+ Sbjct: 2915 FLNIVELILSRMFCKKLYNDI 2853
>LOC_Os03g50570:12003.t04397:unspliced-genomic expressed protein| Length = 5281 Score = 30.4 bits (60), Expect = 6.0 Identities = 12/18 (66%), Positives = 16/18 (88%) Frame = +3 / -3 Query: 15 KLVLRLKNGRVLLVDGML 68 +L+ RL+NGR LL+DGML Sbjct: 2219 ELLNRLQNGRALLLDGML 2166
>LOC_Os10g20390:12010.t01532:unspliced-genomic transparent testa 12 protein, putative, expressed| Length = 3278 Score = 30.4 bits (60), Expect = 6.1 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -1 / +1 Query: 289 VHFHFHFRLVFPWHFFKDKSFPKAPQKSRLKRIFIPL 179 +HF + F V F K FPK ++ LK I +P+ Sbjct: 2551 LHFLYFFCGVVGLRFLKSSKFPKISERRYLKSINLPI 2661
>LOC_Os10g11180:12010.t00919:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 3139 Score = 29.9 bits (59), Expect = 8.4 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +2 / -2 Query: 155 KSFSGYVSQWNEDSFESTFLWCFRKRFIFEEMP 253 K FSG + + D F+S W F+K IF E P Sbjct: 1263 KDFSGLLVSFMVDVFKSEVQWIFQKC*IFIEEP 1165
>LOC_Os06g34710:12006.t03168:unspliced-genomic expressed protein| Length = 7832 Score = 29.9 bits (59), Expect = 8.4 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = -2 / -3 Query: 141 FFCSRLISPCSVRIK*VYLYKSESSAYHRPTTL 43 FF L+ PC+ ++ +Y + + +S H+ TTL Sbjct: 4107 FFIHNLLFPCTPLVQLLYPFVTSTSPSHKSTTL 4009
>LOC_Os04g08749:12004.t005522:unspliced-genomic expressed protein| Length = 3233 Score = 29.9 bits (59), Expect = 8.4 Identities = 9/23 (39%), Positives = 14/23 (60%) Frame = -1 / +3 Query: 310 VSHHYDSVHFHFHFRLVFPWHFF 242 VSH + V ++F F ++ WH F Sbjct: 2067 VSHFFPMVTYYFRFVFLYMWHLF 2135 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 127,224,746 Number of extensions: 1659390 Number of successful extensions: 7071 Number of sequences better than 10.0: 13 Length of query: 128 Length of database: 55,613,886 Length adjustment: 47 Effective length of query: 81 Effective length of database: 52,968,820 Effective search space: 4290474420 Effective search space used: 4290474420 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)