| Clone Name | FLbaf30j23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC154194.2| Mus musculus BAC clone RP24-401L2 from chromosome 17, complete sequence Length = 196871 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 328 taatgcaaagggaactgccaaaaagg 353 ||||||||||||||||| |||||||| Sbjct: 138010 taatgcaaagggaactgtcaaaaagg 138035
>emb|CT572989.7| Mouse DNA sequence from clone RP24-176J14 on chromosome 9, complete sequence Length = 168760 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 333 caaagggaactgccaaaaagg 353 ||||||||||||||||||||| Sbjct: 90969 caaagggaactgccaaaaagg 90989
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 gctcttgctgcctgtaccgtg 112 ||||||||||||||||||||| Sbjct: 927397 gctcttgctgcctgtaccgtg 927377
>gb|AC136901.17| Mus musculus chromosome 3, clone RP24-510H14, complete sequence Length = 129686 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 actttgaaacagttttccagt 70 ||||||||||||||||||||| Sbjct: 8823 actttgaaacagttttccagt 8843
>gb|AC161501.4| Mus musculus chromosome 3, clone RP24-150C17, complete sequence Length = 155378 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 actttgaaacagttttccagt 70 ||||||||||||||||||||| Sbjct: 108115 actttgaaacagttttccagt 108135
>gb|AC131912.6| Mus musculus chromosome 9, clone RP24-164A20, complete sequence Length = 204724 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 333 caaagggaactgccaaaaagg 353 ||||||||||||||||||||| Sbjct: 26070 caaagggaactgccaaaaagg 26090
>gb|AC134453.4| Mus musculus BAC clone RP24-263P23 from chromosome 15, complete sequence Length = 131905 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ttccatattacaaaatctttt 475 ||||||||||||||||||||| Sbjct: 118205 ttccatattacaaaatctttt 118225
>gb|AC159474.9| Mus musculus 10 BAC RP23-28P17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 230201 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 378 aattgggtggttttggtggaa 398 ||||||||||||||||||||| Sbjct: 198073 aattgggtggttttggtggaa 198053
>emb|AL645608.30| Human DNA sequence from clone RP11-54O7 on chromosome 1 Contains three novel genes, a novel gene (MGC45873), a novel gene (DKFZP564C186), a novel gene, a novel gene (DKFZP434H2010), a novel gene (MGC13275), the gene for bHLH factor Hes4 (Hes4), a ribosomal protein L39 (RPL39) pseudogene, a novel gene, the G1P2 gene for interferon alpha-inducible protein (clone IFI-15K), the AGRN gene for agrin, two novel genes and fifteen CpG islands, complete sequence Length = 186759 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 gggtggttttggtggaaaagg 402 ||||||||||||||||||||| Sbjct: 128634 gggtggttttggtggaaaagg 128614
>gb|AC155937.4| Mus musculus 10 BAC RP24-535C14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 152468 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 378 aattgggtggttttggtggaa 398 ||||||||||||||||||||| Sbjct: 102594 aattgggtggttttggtggaa 102614
>emb|AL117376.28|HSDJ971B4 Human DNA sequence from clone RP5-971B4 on chromosome 20 Contains the 3' end of the C20orf23 gene for a novel protein similar to KIF1 type and other kinesin-like proteins, complete sequence Length = 162213 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 gctgcacccatgcctgaaccc 166 ||||||||||||||||||||| Sbjct: 145152 gctgcacccatgcctgaaccc 145132
>gb|AC145578.5| Mus musculus BAC clone RP24-108H11 from chromosome y, complete sequence Length = 148610 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 264 agggatataacaaggcaaatg 284 ||||||||||||||||||||| Sbjct: 71634 agggatataacaaggcaaatg 71614
>gb|AC007978.15|AC007978 Mus musculus BAC MGS3-335O7 (Genome Systems Mouse BAC Library) complete sequence Length = 183936 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 agggatataacaaggcaaatg 284 ||||||||||||||||||||| Sbjct: 170356 agggatataacaaggcaaatg 170376
>dbj|AK131156.1| Mus musculus premature mRNA for mFLJ00207 protein Length = 3521 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 35 ttccaatcttctcagactttgaaac 59 |||||||||||||||||||| |||| Sbjct: 2746 ttccaatcttctcagactttcaaac 2770
>dbj|AP004957.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT34H20, TM0134, complete sequence Length = 132605 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 aaagaagggagttaatgcaaa 336 ||||||||||||||||||||| Sbjct: 37409 aaagaagggagttaatgcaaa 37429
>dbj|AP006415.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT37I11, TM0302a, complete sequence Length = 96704 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 aaagaagggagttaatgcaaa 336 ||||||||||||||||||||| Sbjct: 159 aaagaagggagttaatgcaaa 139
>dbj|AP006141.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT01N13, TM0247, complete sequence Length = 101110 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 aaagaagggagttaatgcaaa 336 ||||||||||||||||||||| Sbjct: 46695 aaagaagggagttaatgcaaa 46715
>dbj|AP004626.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT01J10a, TM0090a, complete sequence Length = 56179 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 aaagaagggagttaatgcaaa 336 ||||||||||||||||||||| Sbjct: 42092 aaagaagggagttaatgcaaa 42072
>gb|AC145082.10| Mus musculus chromosome 3, clone RP24-333B11, complete sequence Length = 168482 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 35 ttccaatcttctcagactttgaaac 59 |||||||||||||||||||| |||| Sbjct: 81600 ttccaatcttctcagactttcaaac 81576
>gb|AC158363.2| Mus musculus BAC clone RP23-214J3 from chromosome 15, complete sequence Length = 228138 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ttccatattacaaaatctttt 475 ||||||||||||||||||||| Sbjct: 49747 ttccatattacaaaatctttt 49767
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 gcttcggcggaaaaggaaaa 421 |||||||||||||||||||| Sbjct: 5898849 gcttcggcggaaaaggaaaa 5898830
>ref|XM_969652.1| PREDICTED: Tribolium castaneum similar to CG5284-PB, isoform B (LOC663613), mRNA Length = 4267 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 ttggaaaattgggtggttttggtg 395 |||||||||| ||||||||||||| Sbjct: 817 ttggaaaatttggtggttttggtg 840
>gb|AC159286.3| Mus musculus BAC clone RP23-314E22 from chromosome 14, complete sequence Length = 210984 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 atacggtttcatttaactac 443 |||||||||||||||||||| Sbjct: 191609 atacggtttcatttaactac 191590
>gb|AC156548.13| Mus musculus chromosome 5, clone RP23-412C8, complete sequence Length = 197890 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 caaatgctgctaatgtcaat 247 |||||||||||||||||||| Sbjct: 170167 caaatgctgctaatgtcaat 170186
>gb|AC157569.12| Mus musculus chromosome 3, clone RP23-434M21, complete sequence Length = 205286 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 aacagttttccagtatgaag 76 |||||||||||||||||||| Sbjct: 144372 aacagttttccagtatgaag 144353
>gb|AC102497.7| Mus musculus chromosome 18, clone RP24-570C15, complete sequence Length = 165977 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 ctgctaatgtcaataatttc 253 |||||||||||||||||||| Sbjct: 71420 ctgctaatgtcaataatttc 71401
>gb|AC140211.2| Mus musculus BAC clone RP24-474M1 from chromosome 14, complete sequence Length = 159577 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 atacggtttcatttaactac 443 |||||||||||||||||||| Sbjct: 158332 atacggtttcatttaactac 158351
>gb|AC115000.7| Mus musculus chromosome 1, clone RP24-103F2, complete sequence Length = 191603 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 aacgcaaatgctgctaatgt 243 |||||||||||||||||||| Sbjct: 61476 aacgcaaatgctgctaatgt 61457
>gb|BC067393.1| Mus musculus LIM and senescent cell antigen-like domains 1, mRNA (cDNA clone IMAGE:30463744), with apparent retained intron Length = 4131 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 268 atataacaaggcaaatggatacgcaaaa 295 |||||||| || |||||||||||||||| Sbjct: 3850 atataacatggaaaatggatacgcaaaa 3877
>gb|AY558156.1| Saccharomyces cerevisiae clone FLH110952.01X YDL005C gene, complete cds Length = 1296 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 agaacgcaaatgctgctaat 241 |||||||||||||||||||| Sbjct: 587 agaacgcaaatgctgctaat 606
>gb|AC121257.6| Mus musculus chromosome 14, clone RP24-202E4, complete sequence Length = 188883 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 atacggtttcatttaactac 443 |||||||||||||||||||| Sbjct: 53343 atacggtttcatttaactac 53362
>gb|AC112950.9| Mus musculus chromosome 1, clone RP23-288K15, complete sequence Length = 179084 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 aacgcaaatgctgctaatgt 243 |||||||||||||||||||| Sbjct: 164647 aacgcaaatgctgctaatgt 164628
>gb|AC163219.3| Mus musculus chromosome 5, clone RP24-155K17, complete sequence Length = 156494 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 caaatgctgctaatgtcaat 247 |||||||||||||||||||| Sbjct: 83793 caaatgctgctaatgtcaat 83812
>dbj|AK134616.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330501L09 product:klotho, full insert sequence Length = 3169 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 caaatgctgctaatgtcaat 247 |||||||||||||||||||| Sbjct: 1706 caaatgctgctaatgtcaat 1725
>gb|AC023720.4| Drosophila melanogaster X BAC RP98-7F15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179205 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 gcttcggcggaaaaggaaaa 421 |||||||||||||||||||| Sbjct: 51510 gcttcggcggaaaaggaaaa 51529
>gb|AC005623.3| Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete sequence Length = 99345 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 taaacggattcggaaaaaag 196 |||||||||||||||||||| Sbjct: 48717 taaacggattcggaaaaaag 48736
>gb|AC013488.9| Homo sapiens chromosome 11, clone RP11-407P18, complete sequence Length = 151304 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 ttggaaaattgggtggtttt 391 |||||||||||||||||||| Sbjct: 112230 ttggaaaattgggtggtttt 112211
>emb|AL360270.18| Human DNA sequence from clone RP11-96K19 on chromosome 1 Contains a putative novel transcript, a gene for a novel protein (FLJ11269), a processed pseudogene for cyclin T2 (CCNT2) and a CpG island, complete sequence Length = 172805 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ttgctacagatgttgcttca 145 |||||||||||||||||||| Sbjct: 60795 ttgctacagatgttgcttca 60776
>dbj|AB010091.2| Mus musculus Klotho genes for Klotho protein (membrane and secreted form), complete cds Length = 14651 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 caaatgctgctaatgtcaat 247 |||||||||||||||||||| Sbjct: 13189 caaatgctgctaatgtcaat 13208
>emb|AL050320.19|HSJ1077I2 Human DNA sequence from clone RP5-1077I2 on chromosome 20 Contains the 3' end of the SPTLC2L gene for serine palmitoyltransferase long chain base subunit 2-like (aminotransferase 2), the 5' end of C20orf82 gene for a novel protein similar to Xenopus Isthmin protein, two novel genes and a putative CpG island, complete sequence Length = 107057 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 atggcaacaacattgcaaag 319 |||||||||||||||||||| Sbjct: 22118 atggcaacaacattgcaaag 22137
>gb|AY060465.1| Drosophila melanogaster SD04624 full length cDNA Length = 3025 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 gcttcggcggaaaaggaaaa 421 |||||||||||||||||||| Sbjct: 735 gcttcggcggaaaaggaaaa 754
>gb|AC016465.8| Homo sapiens, clone RP11-11K9, complete sequence Length = 161082 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ttcagctgcacccatgcctg 161 |||||||||||||||||||| Sbjct: 44178 ttcagctgcacccatgcctg 44159
>emb|Z48432.1|SCCHRIV42 S. cerevisiae chromosome IV left arm (EU) DNA segment (41372 bp) Length = 41372 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 agaacgcaaatgctgctaat 241 |||||||||||||||||||| Sbjct: 37557 agaacgcaaatgctgctaat 37538
>emb|Z48008.1|SC8119 S.cerevisiae chromosome IV cosmid 8119 Length = 37404 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 agaacgcaaatgctgctaat 241 |||||||||||||||||||| Sbjct: 1317 agaacgcaaatgctgctaat 1298
>gb|AC011541.7| Homo sapiens chromosome 19 clone LLNLR-258F7, complete sequence Length = 39944 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 gatataacaaggcaaatgga 286 |||||||||||||||||||| Sbjct: 35094 gatataacaaggcaaatgga 35075
>dbj|AP004936.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT02L13, TM0095c, complete sequence Length = 63750 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 481 tcaattcaatgaataaacaa 500 |||||||||||||||||||| Sbjct: 35380 tcaattcaatgaataaacaa 35361
>gb|AC008417.3|AC008417 Homo sapiens chromosome 5 clone CTC-287O8, complete sequence Length = 216067 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 tttcatttaactaccttgtt 449 |||||||||||||||||||| Sbjct: 140367 tttcatttaactaccttgtt 140386
>gb|AC023172.1|AC023172 Homo sapiens chromosome 19, cosmid F22376, complete sequence Length = 42547 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 gatataacaaggcaaatgga 286 |||||||||||||||||||| Sbjct: 1530 gatataacaaggcaaatgga 1511
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 382 gggtggttttggtggaaaaggctt 405 |||||||| ||||||||||||||| Sbjct: 641198 gggtggttatggtggaaaaggctt 641175
>emb|Z74053.1|SCYDL005C S.cerevisiae chromosome IV reading frame ORF YDL005c Length = 2274 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 agaacgcaaatgctgctaat 241 |||||||||||||||||||| Sbjct: 969 agaacgcaaatgctgctaat 950
>emb|Y14280.1|SCSCC1 Saccharomyces cerevisiae scc1 gene Length = 6350 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 agaacgcaaatgctgctaat 241 |||||||||||||||||||| Sbjct: 917 agaacgcaaatgctgctaat 898
>emb|AL672290.16| Mouse DNA sequence from clone RP23-471M13 on chromosome X, complete sequence Length = 178341 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 cttttgggagtcaattcaat 490 |||||||||||||||||||| Sbjct: 22699 cttttgggagtcaattcaat 22718
>ref|NM_013823.1| Mus musculus klotho (Kl), mRNA dbj|AB005141.1| Mus musculus klotho mRNA, complete cds Length = 5032 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 caaatgctgctaatgtcaat 247 |||||||||||||||||||| Sbjct: 3562 caaatgctgctaatgtcaat 3581
>emb|AL133401.16| Mouse DNA sequence from clone RP21-72L18 on chromosome 5, complete sequence Length = 158344 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 caaatgctgctaatgtcaat 247 |||||||||||||||||||| Sbjct: 120071 caaatgctgctaatgtcaat 120090 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 102,221,914 Number of extensions: 5726436 Number of successful extensions: 114907 Number of sequences better than 10.0: 54 Number of HSP's gapped: 114907 Number of HSP's successfully gapped: 54 Length of query: 538 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 516 Effective length of database: 18,508,616,841 Effective search space: 9550446289956 Effective search space used: 9550446289956 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)