ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf30j17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT829047.1| Oryza sativa (indica cultivar-group) cDNA clone:... 52 0.001
2ref|NM_001063714.1| Oryza sativa (japonica cultivar-group) Os06g... 52 0.001
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
4dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
5dbj|AK063886.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
6emb|CR936457.11| Zebrafish DNA sequence from clone DKEY-21I6 in ... 44 0.23
7emb|CR381664.8| Zebrafish DNA sequence from clone DKEY-200J6 in ... 44 0.23
8emb|AL935031.12| Zebrafish DNA sequence from clone CH211-93I23, ... 42 0.92
9dbj|AP002364.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 0.92

>emb|CT829047.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120K06, full
            insert sequence
          Length = 1316
 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                          
Query: 57   atctcctggttgcttcgccggttgtttttt 86
            ||||||||||| ||||||||||||||||||
Sbjct: 1237 atctcctggttacttcgccggttgtttttt 1266



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>ref|NM_001063714.1| Oryza sativa (japonica cultivar-group) Os06g0222400 (Os06g0222400)
           mRNA, partial cds
          Length = 692

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 57  atctcctggttgcttcgccggttgtttttt 86
           ||||||||||| ||||||||||||||||||
Sbjct: 561 atctcctggttacttcgccggttgtttttt 590



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                             
Query: 57      atctcctggttgcttcgccggttgtttttt 86
               ||||||||||| ||||||||||||||||||
Sbjct: 6315537 atctcctggttacttcgccggttgtttttt 6315508



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>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0516A04
          Length = 145107

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                            
Query: 57     atctcctggttgcttcgccggttgtttttt 86
              ||||||||||| ||||||||||||||||||
Sbjct: 109613 atctcctggttacttcgccggttgtttttt 109584



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>dbj|AK063886.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-G01, full
           insert sequence
          Length = 753

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 57  atctcctggttgcttcgccggttgtttttt 86
           ||||||||||| ||||||||||||||||||
Sbjct: 622 atctcctggttacttcgccggttgtttttt 651



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>emb|CR936457.11| Zebrafish DNA sequence from clone DKEY-21I6 in linkage group 25,
            complete sequence
          Length = 178353

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 146  aattttattgcaagtctcattg 167
            ||||||||||||||||||||||
Sbjct: 6091 aattttattgcaagtctcattg 6070



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>emb|CR381664.8| Zebrafish DNA sequence from clone DKEY-200J6 in linkage group 25,
              complete sequence
          Length = 277093

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 146    aattttattgcaagtctcattg 167
              ||||||||||||||||||||||
Sbjct: 221572 aattttattgcaagtctcattg 221551



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>emb|AL935031.12| Zebrafish DNA sequence from clone CH211-93I23, complete sequence
          Length = 178457

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 49   tgttagtcatctcctggttgc 69
            |||||||||||||||||||||
Sbjct: 9284 tgttagtcatctcctggttgc 9264



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>dbj|AP002364.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-121L10, complete
              sequence
          Length = 165703

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 147    attttattgcaagtctcattg 167
              |||||||||||||||||||||
Sbjct: 117218 attttattgcaagtctcattg 117238


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 28,797,064
Number of extensions: 1387168
Number of successful extensions: 87510
Number of sequences better than 10.0: 9
Number of HSP's gapped: 87510
Number of HSP's successfully gapped: 9
Length of query: 261
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 239
Effective length of database: 18,508,616,841
Effective search space: 4423559424999
Effective search space used: 4423559424999
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)
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