| Clone Name | FLbaf33g24 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X65875.1|HVITR1 H.vulgare Itr1 gene Length = 5463 Score = 1059 bits (534), Expect = 0.0 Identities = 585/602 (97%) Strand = Plus / Plus Query: 5 ccaacaacatcccttctaaacgaaaacaatggcgttcaagtaccagctcatcctctcggc 64 |||||||||||||||| | || ||||||||||||||||||||||||| |||| ||||| Sbjct: 2366 ccaacaacatcccttcaatttgataacaatggcgttcaagtaccagctcctcctgtcggc 2425 Query: 65 cgccgtcatgctcgccattctcgtcgccactgccaccagtttcggggattcgtgtgctcc 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2426 cgccgtcatgctcgccattctcgtcgccactgccaccagtttcggggattcgtgtgctcc 2485 Query: 125 aggggatgcgttgccacacaaccctctcagagcctgccgcacctacgtggtcagtcaaat 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2486 aggggatgcgttgccacacaaccctctcagagcctgccgcacctacgtggtcagtcaaat 2545 Query: 185 ctgccaccaaggccccagactcctcacctcggacatgaagaggcggtattgcgacgagtt 244 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct: 2546 ctgccaccaaggccccagactcctcacctcggacatgaagaggcggtgttgcgacgagct 2605 Query: 245 gtcggccatcccggcgtactgcaggtgcgaagcgctgcgtatcatcatgcaaggggtagt 304 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2606 gtcggccatcccggcgtactgtaggtgcgaagcgctgcgtatcatcatgcaaggggtagt 2665 Query: 305 aacttggcagggtgcgttcgagggtgcctacttcaaggacacgcccaactgccctaggga 364 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2666 aacttggcagggtgcgttcgagggtgcctacttcaaggactcgcccaactgccctaggga 2725 Query: 365 gaggcaaacgagctacgccgccaacctcgtcaccccgcaggagtgcaacctatggaccat 424 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 2726 gaggcaaacgagctacgccgccaacctcgtcaccccgcaggagtgcaacctagggaccat 2785 Query: 425 ccacggcagcccgtcctgccccgaactgcagcccggatatggagtggtctcgtcataagt 484 |||||||||| ||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 2786 ccacggcagcgcgtactgccccgaactgcagcccggatatggagtggtcttgtaataagt 2845 Query: 485 tataacgactagctcgatcatgaataagcatggtgcatcgatcaatggaccaatcgattg 544 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2846 tctaacgactagctcgatcatgaataagcatggtgcatcgatcaatggaccaatcgattg 2905 Query: 545 tatgcatctatgcccatgtgtgatgtgtgttaaatcgtaataaagagcatcagagtattt 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2906 tatgcatctatgcccatgtgtgatgtgtgttaaatcgtaataaagagcatcagagtattt 2965 Query: 605 tc 606 || Sbjct: 2966 tc 2967 Score = 432 bits (218), Expect = e-118 Identities = 391/444 (88%), Gaps = 10/444 (2%) Strand = Plus / Plus Query: 138 ccacacaaccctctcagagcctgccgcacctacgtggtcagtcaaatctgccaccaaggc 197 ||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 4814 ccacacaaccctctcgg-gcctgccgcacctacgtggtcagtcaaatctgccatgaaggc 4872 Query: 198 cccagactcctcacctcggacatgaagaggcggtattgcgacgagttgtcggccatcccg 257 | |||||| |||||| ||||||||||||||||| ||||||||| |||||||||||||| Sbjct: 4873 cg-agactcttcacctgggacatgaagaggcggtgctgcgacgagctgtcggccatcccg 4931 Query: 258 gcgtactgcaggtgcgaagcgctgcgtatcatcatgcaaggggtagtaacttggcagggt 317 |||||||||||||||||||||||||| |||||||| | ||||||||| || ||| ||| Sbjct: 4932 tcgtactgcaggtgcgaagcgctgcgtgtcatcatggatggggtagtacctccgcacggt 4991 Query: 318 gcgttcgagggtgcctacttcaaggacacgcccaactgccctagggagaggcaaacgagc 377 | ||||||||||||||||||| | |||| ||||||||||||||||| || ||||| |||| Sbjct: 4992 gtgttcgagggtgcctacttccaagacatgcccaactgccctagggtgacgcaaaggagc 5051 Query: 378 tacgccgccaacctcgtcaccccgcaggagtgcaacctatggaccatccacggcagcccg 437 |||||||||||||||||| ||| |||||||||||||||| ||| || || ||||||||| Sbjct: 5052 tacgccgccaacctcgtcncccggcaggagtgcaacctagagacaatacatggcagcccg 5111 Query: 438 tcctgccccgaactgcagcccggatatggagtggtctcgtcataagttataacgactagc 497 | ||||||||||||||||||||||||||||||| |||| ||| || || |||||| Sbjct: 5112 tactgccccgaactgcagcccggatatggagtgccctcg---taatttcta---actagc 5165 Query: 498 tcgatcatgaataagcatggtgcatcgatcaatggaccaatcgattgtatgcatctatgc 557 |||||| ||||||||||||||||||||||| ||||| ||||| |||||||||| ||||| Sbjct: 5166 tcgatcgtgaataagcatggtgcatcgatcgatggatgaatcgcttgtatgcatttatgc 5225 Query: 558 cc--atgtgtgatgtgtgttaaat 579 || |||||||||||| ||||||| Sbjct: 5226 ccatatgtgtgatgtgcgttaaat 5249
>emb|X17302.1|HVCME2 H.vulgare RNA for trypsin inhibitor CMe Length = 582 Score = 1011 bits (510), Expect = 0.0 Identities = 562/578 (97%), Gaps = 1/578 (0%) Strand = Plus / Plus Query: 29 aacaatggcgttcaagtaccagctcatcctctcggccgccgtcatgctcgccattctcgt 88 ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 6 aacaatggcgttcaagtaccagctcctcctgtcggccgccgtcatgctcgccattctcgt 65 Query: 89 cgccactgccaccagtttcggggattcgtgtgctccaggggatgcgttgccacacaaccc 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 66 cgccactgccaccagtttcggggattcgtgtgctccaggggatgcgttgccacacaaccc 125 Query: 149 tctcagagcctgccgcacctacgtggtcagtcaaatctgccaccaaggccccagactcct 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126 tctcagagcctgccgcacctacgtggtcagtcaaatctgccaccaaggccccagactcct 185 Query: 209 cacctcggacatgaagaggcggtattgcgacgagttgtcggccatcccggcgtactgcag 268 ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| || Sbjct: 186 cacctcggacatgaagaggcggtgttgcgacgagctgtcggccatcccggcgtactgtag 245 Query: 269 gtgcgaagcgctgcgtatcatcatgcaaggggtagtaacttggcagggtgcgttcgaggg 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 246 gtgcgaagcgctgcgtatcatcatgcaaggggtagtaacttggcagggtgcgttcgaggg 305 Query: 329 tgcctacttcaaggacacgcccaactgccctagggagaggcaaacgagctacgccgccaa 388 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 306 tgcctacttcaaggactcgcccaactgccctagggagaggcaaacgagctacgccgccaa 365 Query: 389 cctcgtcaccccgcaggagtgcaacctatggaccatccacggcagcccgtcctgccccga 448 |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| Sbjct: 366 cctcgtcaccccgcaggagtgcaacctagggaccatccacggcagcgcgtactgccccga 425 Query: 449 actgcagcccggatatggagtggtctcgtcataagttataacgactagctcgatcatgaa 508 ||||||||||| |||| ||||||||| || ||||||| ||||||||| |||||||||||| Sbjct: 426 actgcagcccgcatattgagtggtcttgtaataagttctaacgactacctcgatcatgaa 485 Query: 509 taagcatggtgcatcgatcaatggaccaatcgattgtatgcatctatgcccatgtgtgat 568 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 486 taagcatggtgcatcgatc-atggaccaatcgattgtatgcatctatgcccatgtgtgat 544 Query: 569 gtgtgttaaatcgtaataaagagcatcagagtattttc 606 |||||||||||||||||||||||||||||||||||||| Sbjct: 545 gtgtgttaaatcgtaataaagagcatcagagtattttc 582
>emb|AJ222978.1|HVAJ2978 Hordeum vulgare Itr1 gene for BTI-CMe3.1 protein Length = 484 Score = 952 bits (480), Expect = 0.0 Identities = 483/484 (99%) Strand = Plus / Plus Query: 33 atggcgttcaagtaccagctcatcctctcggccgccgtcatgctcgccattctcgtcgcc 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atggcgttcaagtaccagctcatcctctcggccgccgtcatgctcgccattctcgtcgcc 60 Query: 93 actgccaccagtttcggggattcgtgtgctccaggggatgcgttgccacacaaccctctc 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 actgccaccagtttcggggattcgtgtgctccaggggatgcgttgccacacaaccctctc 120 Query: 153 agagcctgccgcacctacgtggtcagtcaaatctgccaccaaggccccagactcctcacc 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 agagcctgccgcacctacgtggtcagtcaaatctgccaccaaggccccagactcctcacc 180 Query: 213 tcggacatgaagaggcggtattgcgacgagttgtcggccatcccggcgtactgcaggtgc 272 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tcggacatgaagaggcggtgttgcgacgagttgtcggccatcccggcgtactgcaggtgc 240 Query: 273 gaagcgctgcgtatcatcatgcaaggggtagtaacttggcagggtgcgttcgagggtgcc 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gaagcgctgcgtatcatcatgcaaggggtagtaacttggcagggtgcgttcgagggtgcc 300 Query: 333 tacttcaaggacacgcccaactgccctagggagaggcaaacgagctacgccgccaacctc 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tacttcaaggacacgcccaactgccctagggagaggcaaacgagctacgccgccaacctc 360 Query: 393 gtcaccccgcaggagtgcaacctatggaccatccacggcagcccgtcctgccccgaactg 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gtcaccccgcaggagtgcaacctatggaccatccacggcagcccgtcctgccccgaactg 420 Query: 453 cagcccggatatggagtggtctcgtcataagttataacgactagctcgatcatgaataag 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 cagcccggatatggagtggtctcgtcataagttataacgactagctcgatcatgaataag 480 Query: 513 catg 516 |||| Sbjct: 481 catg 484
>emb|AJ222977.1|HVAJ2977 Hordeum vulgare Itr1 gene for BTI-CMe1 protein Length = 484 Score = 888 bits (448), Expect = 0.0 Identities = 475/484 (98%) Strand = Plus / Plus Query: 33 atggcgttcaagtaccagctcatcctctcggccgccgtcatgctcgccattctcgtcgcc 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atggcgttcaagtaccagctcatcctctcggccgccgtcatgctcgccattctcgtcgcc 60 Query: 93 actgccaccagtttcggggattcgtgtgctccaggggatgcgttgccacacaaccctctc 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 actgccaccagtttcggggattcgtgtgctccaggggatgcgttgccacacaaccctctc 120 Query: 153 agagcctgccgcacctacgtggtcagtcaaatctgccaccaaggccccagactcctcacc 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 agagcctgccgcacctacgtggtcagtcaaatctgccaccaaggccccagactcctcacc 180 Query: 213 tcggacatgaagaggcggtattgcgacgagttgtcggccatcccggcgtactgcaggtgc 272 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tcggacatgaagaggcggtgttgcgacgagttgtcggccatcccggcgtactgcaggtgc 240 Query: 273 gaagcgctgcgtatcatcatgcaaggggtagtaacttggcagggtgcgttcgagggtgcc 332 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct: 241 gaagcgctgcgtatcatcatggaaggggtagtaacttggcagggtgcgttcgagggtcgc 300 Query: 333 tacttcaaggacacgcccaactgccctagggagaggcaaacgagctacgccgccaacctc 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tacttcaaggacacgcccaactgccctagggagaggcaaacgagctacgccgccaacctc 360 Query: 393 gtcaccccgcaggagtgcaacctatggaccatccacggcagcccgtcctgccccgaactg 452 |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct: 361 gtcaccccgcaggagtgcaacctatggaccatccacggcagcgcgtactgccccgaactg 420 Query: 453 cagcccggatatggagtggtctcgtcataagttataacgactagctcgatcatgaataag 512 |||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||| Sbjct: 421 cagcccggatatggagtggtcttgtaataagttctaacgactagctcgatcatgaataag 480 Query: 513 catg 516 |||| Sbjct: 481 catg 484
>emb|AJ251931.1|HVU251931 Hordeum vulgare itr1 gene for BTI-CMe2.1 Length = 800 Score = 848 bits (428), Expect = 0.0 Identities = 491/512 (95%) Strand = Plus / Plus Query: 5 ccaacaacatcccttctaaacgaaaacaatggcgttcaagtaccagctcatcctctcggc 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 ccaacaacatcccttctaaacgaaaacaatggcgttcaagtaccagctcatcctctcggc 348 Query: 65 cgccgtcatgctcgccattctcgtcgccactgccaccagtttcggggattcgtgtgctcc 124 ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 349 cgccgtcatgctcgccattctcgtcgccactgccaccagtttcggtgatatgtgtgctcc 408 Query: 125 aggggatgcgttgccacacaaccctctcagagcctgccgcacctacgtggtcagtcaaat 184 ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 409 aggagatgagttgccacacaaccctctcagagcctgccgcacctacgtggtcagtcagct 468 Query: 185 ctgccaccaaggccccagactcctcacctcggacatgaagaggcggtattgcgacgagtt 244 ||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||| | Sbjct: 469 ctgccaccaaggcccaagactcctcacctcggacatgaagaggcgttgttgcgacgagct 528 Query: 245 gtcggccatcccggcgtactgcaggtgcgaagcgctgcgtatcatcatgcaaggggtagt 304 |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 529 gtcggccatcccggtgtactgtaggtgcgaagcgctgcgtatcatcatgcaaggggtagt 588 Query: 305 aacttggcagggtgcgttcgagggtgcctacttcaaggacacgcccaactgccctaggga 364 ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 589 aacttggcagggtgcgttcgagggtgcttacttcaaggactcgcccaactgccctaggga 648 Query: 365 gaggcaaacgagctacgccgccaacctcgtcaccccgcaggagtgcaacctatggaccat 424 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 649 gaggcaaacgagctacgccgccaacctcgtcaccccgcaggagtgcaacctagggaccat 708 Query: 425 ccacggcagcccgtcctgccccgaactgcagcccggatatggagtggtctcgtcataagt 484 |||||||||| ||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 709 ccacggcagcgcgtactgccccgaactgcagcccggatatggagtggtcttgtaataagt 768 Query: 485 tataacgactagctcgatcatgaataagcatg 516 | |||||||||||||||||||||||||||||| Sbjct: 769 tctaacgactagctcgatcatgaataagcatg 800
>emb|X98593.1|HVITR11 H.vulgare itr1.1 gene Length = 799 Score = 842 bits (425), Expect = 0.0 Identities = 491/513 (95%) Strand = Plus / Plus Query: 5 ccaacaacatcccttctaaacgaaaacaatggcgttcaagtaccagctcatcctctcggc 64 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 287 ccaacaacatcccttctaaacgaaaacaatggcgttcaagtaccagctcctcctctcggc 346 Query: 65 cgccgtcatgctcgccattctcgtcgccactgccaccagtttcggggattcgtgtgctcc 124 ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 347 cgccgtcatgctcgccattctcgtcgccactgccaccagtttcggtgatatgtgtgctcc 406 Query: 125 aggggatgcgttgccacacaaccctctcagagcctgccgcacctacgtggtcagtcaaat 184 ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 407 aggagatgagttgccacacaaccctctcagagcctgccgcacctacgtggtcagtcagct 466 Query: 185 ctgccaccaaggccccagactcctcacctcggacatgaagaggcggtattgcgacgagtt 244 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | Sbjct: 467 ctgccaccaaggccccagactcctcacctcggacatgaagaggcgttgttgcgacgagct 526 Query: 245 gtcggccatcccggcgtactgcaggtgcgaagcgctgcgtatcatcatgcaaggggtagt 304 |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 527 gtcggccatcccggtgtactgtaggtgcgaagcgctgcgtatcatcatgcaaggggtagt 586 Query: 305 aacttggcagggtgcgttcgagggtgcctacttcaaggacacgcccaactgccctaggga 364 ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 587 aacttggcagggtgcgttcgagggtgcttacttcaaggactcgcccaactgccctaggga 646 Query: 365 gaggcaaacgagctacgccgccaacctcgtcaccccgcaggagtgcaacctatggaccat 424 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 647 gagggaaacgagctacgccgccaacctcgtcaccccgcaggagtgcaacctagggaccat 706 Query: 425 ccacggcagcccgtcctgccccgaactgcagcccggatatggagtggtctcgtcataagt 484 |||||||||| ||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 707 ccacggcagcgcgtactgccccgaactgcagcccggatatggagtggtcttgtaataagt 766 Query: 485 tataacgactagctcgatcatgaataagcatgg 517 | ||||||||||||||||||||||||||||||| Sbjct: 767 tctaacgactagctcgatcatgaataagcatgg 799
>emb|AJ222974.1|HSAJ2974 Hordeum spontaneum Itr1 gene for BTI-CMe2.1 protein Length = 484 Score = 817 bits (412), Expect = 0.0 Identities = 466/484 (96%) Strand = Plus / Plus Query: 33 atggcgttcaagtaccagctcatcctctcggccgccgtcatgctcgccattctcgtcgcc 92 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct: 1 atggcgttcaagtaccagctcctcctctcggccgccgtcatgctcgccattctcgccgcc 60 Query: 93 actgccaccagtttcggggattcgtgtgctccaggggatgcgttgccacacaaccctctc 152 |||| |||||||||||||||| |||||||||||| |||| ||||||||||||||||||| Sbjct: 61 actgtcaccagtttcggggatatgtgtgctccaggagatgagttgccacacaaccctctc 120 Query: 153 agagcctgccgcacctacgtggtcagtcaaatctgccaccaaggccccagactcctcacc 212 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 121 agagcctgccgcacctacgtggtcagtcaagtctgccaccaaggccccagactcctcacc 180 Query: 213 tcggacatgaagaggcggtattgcgacgagttgtcggccatcccggcgtactgcaggtgc 272 ||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||| Sbjct: 181 tcggacatgaagaggcggtgttgcgacgagctgtcggccatcccggcgtactgtaggtgc 240 Query: 273 gaagcgctgcgtatcatcatgcaaggggtagtaacttggcagggtgcgttcgagggtgcc 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gaagcgctgcgtatcatcatgcaaggggtagtaacttggcagggtgcgttcgagggtgcc 300 Query: 333 tacttcaaggacacgcccaactgccctagggagaggcaaacgagctacgccgccaacctc 392 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tacttcaaggactcgcccaactgccctagggagaggcaaacgagctacgccgccaacctc 360 Query: 393 gtcaccccgcaggagtgcaacctatggaccatccacggcagcccgtcctgccccgaactg 452 |||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| Sbjct: 361 gtcaccccgcaggagtgcaacctagggaccatccacggcagcgcgtactgccccgaactg 420 Query: 453 cagcccggatatggagtggtctcgtcataagttataacgactagctcgatcatgaataag 512 |||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||| Sbjct: 421 cagcccggatatggagtggtcttgtaataagttctaacgactagctcgatcatgaataag 480 Query: 513 catg 516 |||| Sbjct: 481 catg 484
>emb|AJ222976.1|HSAJ2976 Hordeum spontaneum Itr1 gene for BTI-CMe4 protein Length = 481 Score = 702 bits (354), Expect = 0.0 Identities = 452/484 (93%), Gaps = 3/484 (0%) Strand = Plus / Plus Query: 33 atggcgttcaagtaccagctcatcctctcggccgccgtcatgctcgccattctcgtcgcc 92 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct: 1 atggcgttcaagtaccagctcctcctctcggccgccgtcatgctcgccattctcgccgcc 60 Query: 93 actgccaccagtttcggggattcgtgtgctccaggggatgcgttgccacacaaccctctc 152 |||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct: 61 actgtcaccagtttcggggatatgtgtgctccaggggatgcgttgccagccaaccctctc 120 Query: 153 agagcctgccgcacctacgtggtcagtcaaatctgccaccaaggccccagactcctcacc 212 ||||||||||||||||| ||||| |||||||||||||| |||||| ||||| |||| Sbjct: 121 agagcctgccgcacctatgtggttagtcaaatctgccatgtaggccctagactatccacc 180 Query: 213 tcggacatgaagaggcggtattgcgacgagttgtcggccatcccggcgtactgcaggtgc 272 | ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct: 181 tgggacatgaaaaggcggtgctgcgacgagctgtcggccatcccggcgtactgcagatgc 240 Query: 273 gaagcgctgcgtatcatcatgcaaggggtagtaacttggcagggtgcgttcgagggtgcc 332 | |||||||||||||||||| | ||| |||||||||||||||||| ||||| ||||| Sbjct: 241 gcggcgctgcgtatcatcatggatgggatagtaacttggcagggtgtgttcg---gtgcc 297 Query: 333 tacttcaaggacacgcccaactgccctagggagaggcaaacgagctacgccgccaacctc 392 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 tacttcaaggacatgcccaactgccctagggagaggcaaacgagctacgccgccaacctc 357 Query: 393 gtcaccccgcaggagtgcaacctatggaccatccacggcagcccgtcctgccccgaactg 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 358 gtcaccccgcaggagtgcaacctatggaccatccacggcagcccgtcctgccccgaactg 417 Query: 453 cagcccggatatggagtggtctcgtcataagttataacgactagctcgatcatgaataag 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 cagcccggatatggagtggtctcgtcataagttataacgactagctcgatcatgaataag 477 Query: 513 catg 516 |||| Sbjct: 478 catg 481
>emb|AJ222975.1|HSAJ2975 Hordeum spontaneum Itr1 gene for BTI-CMe2.2 protein Length = 481 Score = 638 bits (322), Expect = e-180 Identities = 444/484 (91%), Gaps = 3/484 (0%) Strand = Plus / Plus Query: 33 atggcgttcaagtaccagctcatcctctcggccgccgtcatgctcgccattctcgtcgcc 92 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct: 1 atggcgttcaagtaccagctcctcctctcggccgccgtcatgctcgccattctcgccgcc 60 Query: 93 actgccaccagtttcggggattcgtgtgctccaggggatgcgttgccacacaaccctctc 152 |||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct: 61 actgtcaccagtttcggggatatgtgtgctccaggggatgcgttgccagccaaccctctc 120 Query: 153 agagcctgccgcacctacgtggtcagtcaaatctgccaccaaggccccagactcctcacc 212 ||||||||||||||||| ||||| |||||||||||||| |||||| ||||| |||| Sbjct: 121 agagcctgccgcacctatgtggttagtcaaatctgccatgtaggccctagactatccacc 180 Query: 213 tcggacatgaagaggcggtattgcgacgagttgtcggccatcccggcgtactgcaggtgc 272 | ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct: 181 tgggacatgaagaggcggtgctgcgacgagctgtcggccatcccggcgtactgcagatgc 240 Query: 273 gaagcgctgcgtatcatcatgcaaggggtagtaacttggcagggtgcgttcgagggtgcc 332 || |||||||||||||||||| | ||| ||||||||||||||||| |||| |||||| Sbjct: 241 gaggcgctgcgtatcatcatggatgggacagtaacttggcagggtgtgttc---ggtgcc 297 Query: 333 tacttcaaggacacgcccaactgccctagggagaggcaaacgagctacgccgccaacctc 392 ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 298 tacttcaaggacatgcccaactgccctagggtgatgcaaacgagctacgccgccaacctc 357 Query: 393 gtcaccccgcaggagtgcaacctatggaccatccacggcagcccgtcctgccccgaactg 452 |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 358 gtcaacccgcaggagtgcaacctatggactatccacggcagcccgtcctgccccgaactg 417 Query: 453 cagcccggatatggagtggtctcgtcataagttataacgactagctcgatcatgaataag 512 ||||||||||||| |||||||| || | ||||| |||||||||||||||||||||||||| Sbjct: 418 cagcccggatatgaagtggtcttgtaacaagttctaacgactagctcgatcatgaataag 477 Query: 513 catg 516 |||| Sbjct: 478 catg 481
>emb|AJ223458.1|HVAJ3458 Hordeum vulgare Itr1 gene for BTI-CMe2.2 protein, cultivar Hatif de Grignon Length = 787 Score = 622 bits (314), Expect = e-175 Identities = 445/488 (91%), Gaps = 3/488 (0%) Strand = Plus / Plus Query: 29 aacaatggcgttcaagtaccagctcatcctctcggccgccgtcatgctcgccattctcgt 88 ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| Sbjct: 303 aacaatggcgttcaagtaccaactcctcctctcggccgccgtcatgctcgccactctcgc 362 Query: 89 cgccactgccaccagtttcggggattcgtgtgctccaggggatgcgttgccacacaaccc 148 |||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 363 cgccactgtcaccagtttcggggatatgtgtgctccaggggatgcgttgccagccaaccc 422 Query: 149 tctcagagcctgccgcacctacgtggtcagtcaaatctgccaccaaggccccagactcct 208 ||||||||||||||||||||| ||||| |||||||||||||| |||||| ||||| Sbjct: 423 tctcagagcctgccgcacctatgtggttagtcaaatctgccatgtaggccctagactatc 482 Query: 209 cacctcggacatgaagaggcggtattgcgacgagttgtcggccatcccggcgtactgcag 268 ||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct: 483 cacctgggacatgaagaggcggtgctgcgacgagctgtcggccatcccggcgtactgcag 542 Query: 269 gtgcgaagcgctgcgtatcatcatgcaaggggtagtaacttggcagggtgcgttcgaggg 328 ||||| |||||||||||||||||| | ||| ||||||||||||||||| |||| || Sbjct: 543 atgcgaggcgctgcgtatcatcatggatgggacagtaacttggcagggtgtgttc---gg 599 Query: 329 tgcctacttcaaggacacgcccaactgccctagggagaggcaaacgagctacgccgccaa 388 ||||||||||||||||| ||||||| ||||||||| || ||||||||||||||||||||| Sbjct: 600 tgcctacttcaaggacatgcccaacagccctagggtgatgcaaacgagctacgccgccaa 659 Query: 389 cctcgtcaccccgcaggagtgcaacctatggaccatccacggcagcccgtcctgccccga 448 |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 660 cctcgtcaacccgcaggagtgcaacctatggactatccacggcagcccgtcctgccccga 719 Query: 449 actgcagcccggatatggagtggtctcgtcataagttataacgactagctcgatcatgaa 508 ||||||||||||||||| |||||||| || | ||||| |||||||||||||||||||||| Sbjct: 720 actgcagcccggatatgaagtggtcttgtaacaagttctaacgactagctcgatcatgaa 779 Query: 509 taagcatg 516 |||||||| Sbjct: 780 taagcatg 787
>emb|X98594.1|HVITR12 H.vulgare itr1.2 gene Length = 789 Score = 601 bits (303), Expect = e-168 Identities = 443/489 (90%), Gaps = 3/489 (0%) Strand = Plus / Plus Query: 29 aacaatggcgttcaagtaccagctcatcctctcggccgccgtcatgctcgccattctcgt 88 ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| Sbjct: 304 aacaatggcgttcaagtaccaactcctcctctcggccgccgtcatgctcgccactctcgc 363 Query: 89 cgccactgccaccagtttcggggattcgtgtgctccaggggatgcgttgccacacaaccc 148 |||||||| |||||||||||| ||| |||||||||||| |||||||||||| |||||| Sbjct: 364 cgccactgtcaccagtttcggtgatatgtgtgctccaggagatgcgttgccagccaaccc 423 Query: 149 tctcagagcctgccgcacctacgtggtcagtcaaatctgccaccaaggccccagactcct 208 ||||||||||||||||||||| ||||| |||||||||||||| |||||| ||||| Sbjct: 424 tctcagagcctgccgcacctatgtggttagtcaaatctgccatgtaggccctagactatc 483 Query: 209 cacctcggacatgaagaggcggtattgcgacgagttgtcggccatcccggcgtactgcag 268 ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct: 484 cacctcggacatgaagaggcggtgctgcgacgagctgtcggccatcccggcgtactgcag 543 Query: 269 gtgcgaagcgctgcgtatcatcatgcaaggggtagtaacttggcagggtgcgttcgaggg 328 ||||| |||||||||||||||||| | ||| ||||||||||||||||| |||| || Sbjct: 544 atgcgaggcgctgcgtatcatcatggatgggacagtaacttggcagggtgtgttc---gg 600 Query: 329 tgcctacttcaaggacacgcccaactgccctagggagaggcaaacgagctacgccgccaa 388 ||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct: 601 tgcttacttcaaggacatgcccaactgccctagggtgatgcaaacgagctacgccgccaa 660 Query: 389 cctcgtcaccccgcaggagtgcaacctatggaccatccacggcagcccgtcctgccccga 448 |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 661 cctcgtcaacccgcaggagtgcaacctatggactatccacggcagcccgtcctgccccga 720 Query: 449 actgcagcccggatatggagtggtctcgtcataagttataacgactagctcgatcatgaa 508 ||||||||||||||||| |||||||| || | ||||| |||||||||| |||||||||| Sbjct: 721 actgcagcccggatatgaagtggtcttgtaacaagttctaacgactagtccgatcatgaa 780 Query: 509 taagcatgg 517 ||||||||| Sbjct: 781 taagcatgg 789
>emb|X75610.1|TACMX3 T.aestivum Itrl-3 mRNA for CMx Length = 568 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 33 atggcgttcaagtaccagctcatcctctcggccgccgtcatgctcgcc 80 |||||||||||| |||||||||||||||| ||||| || |||||||| Sbjct: 1 atggcgttcaagcaccagctcatcctctccaccgccatcctgctcgcc 48
>emb|X75609.1|YACMX2 T.aestivum Itrl-2 mRNA for CMx Length = 574 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 33 atggcgttcaagtaccagctcatcctctcggccgccgtcatgctcgcc 80 |||||||||||| |||||||||||||||| ||||| || |||||||| Sbjct: 1 atggcgttcaagcaccagctcatcctctccaccgccatcctgctcgcc 48
>emb|X75608.1|TACMX1 T.aestivum Itrl-1 mRNA for CMx Length = 568 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 33 atggcgttcaagtaccagctcatcctctcggccgccgtcatgctcgcc 80 |||||||||||| |||||||||||||||| ||||| || |||||||| Sbjct: 1 atggcgttcaagcaccagctcatcctctccaccgccatcctgctcgcc 48
>gb|AC190220.1| Pan troglodytes chromosome 7 clone CH251-385D13, complete sequence Length = 172735 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 179 tcaaatctgccaccaaggcccc 200 |||||||||||||||||||||| Sbjct: 8601 tcaaatctgccaccaaggcccc 8622
>gb|AC006970.6| Homo sapiens PAC clone RP4-725G10 from 7, complete sequence Length = 136098 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 179 tcaaatctgccaccaaggcccc 200 |||||||||||||||||||||| Sbjct: 111270 tcaaatctgccaccaaggcccc 111249
>gb|AC150749.3| Pan troglodytes BAC clone CH251-553P23 from chromosome 7, complete sequence Length = 237211 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 179 tcaaatctgccaccaaggcccc 200 |||||||||||||||||||||| Sbjct: 220019 tcaaatctgccaccaaggcccc 220040
>dbj|AB025630.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPA22 Length = 51436 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 541 attgtatgcatctatgcccat 561 ||||||||||||||||||||| Sbjct: 49111 attgtatgcatctatgcccat 49131
>emb|CT835557.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI217I20, full insert sequence Length = 2150 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 386 caacctcgtcaccccgcaggagtgcaac 413 ||||||||||| |||||||||| ||||| Sbjct: 1630 caacctcgtcaacccgcaggagcgcaac 1657
>emb|CT835556.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI210B21, full insert sequence Length = 2156 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 386 caacctcgtcaccccgcaggagtgcaac 413 ||||||||||| |||||||||| ||||| Sbjct: 1628 caacctcgtcaacccgcaggagcgcaac 1655
>ref|NM_001073046.1| Oryza sativa (japonica cultivar-group) Os12g0257800 (Os12g0257800) mRNA, complete cds Length = 573 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 386 caacctcgtcaccccgcaggagtgcaac 413 ||||||||||| |||||||||| ||||| Sbjct: 336 caacctcgtcaacccgcaggagcgcaac 363
>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome Length = 7804765 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 cgccgccaacctcgtcaccc 399 |||||||||||||||||||| Sbjct: 4342098 cgccgccaacctcgtcaccc 4342117
>emb|CR812482.14| Zebrafish DNA sequence from clone CH211-157N19 in linkage group 1, complete sequence Length = 179573 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 catgtgtgatgtgtgttaaa 578 |||||||||||||||||||| Sbjct: 142057 catgtgtgatgtgtgttaaa 142038
>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence Length = 491611 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 cgccattctcgtcgccactg 96 |||||||||||||||||||| Sbjct: 398106 cgccattctcgtcgccactg 398087
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 51 ctcatcctctcggccgccgtcatgctcg 78 ||||||||||||||||||| ||| |||| Sbjct: 1802326 ctcatcctctcggccgccgccatcctcg 1802353
>gb|AF106583.1| Caenorhabditis elegans cosmid F23C8, complete sequence Length = 38419 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 catggtgcatcgatcaatgg 532 |||||||||||||||||||| Sbjct: 12184 catggtgcatcgatcaatgg 12165
>gb|AC135079.9| Mus musculus chromosome 15, clone RP24-439P7, complete sequence Length = 155778 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 gcgttgccacacaaccctctcaga 155 |||||||||||||| ||||||||| Sbjct: 59179 gcgttgccacacaatcctctcaga 59156
>gb|AY450285.1| Pseudomonas putida NCIMB 10007 plasmid CAM CamP (camP), regulatory protein, and lactone hydrolase (camQ) genes, complete cds Length = 4485 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 gccactgccaccagtttcgg 109 |||||||||||||||||||| Sbjct: 1973 gccactgccaccagtttcgg 1954
>gb|AC101882.14| Mus musculus chromosome 10, clone RP23-394M6, complete sequence Length = 209838 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 555 tgcccatgtgtgatgtgtgt 574 |||||||||||||||||||| Sbjct: 91269 tgcccatgtgtgatgtgtgt 91288
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 386 caacctcgtcaccccgcaggagtgcaac 413 ||||||||||| |||||||||| ||||| Sbjct: 8873428 caacctcgtcaacccgcaggagcgcaac 8873455
>emb|AL136442.12| Human DNA sequence from clone RP11-25J23 on chromosome 13 Contains the 3' end of a novel gene (KIAA1165) (likely ortholog of mouse Nedd4 WW domain-binding protein 5A) and a novel gene, complete sequence Length = 157695 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 557 cccatgtgtgatgtgtgtta 576 |||||||||||||||||||| Sbjct: 33637 cccatgtgtgatgtgtgtta 33618
>emb|BX901898.15| Zebrafish DNA sequence from clone DKEY-148E3 in linkage group 1, complete sequence Length = 249378 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 catgtgtgatgtgtgttaaa 578 |||||||||||||||||||| Sbjct: 154046 catgtgtgatgtgtgttaaa 154065
>gb|AC018843.4|AC018843 Homo sapiens chromosome 3 clone RP11-900O22 map 3p, complete sequence Length = 211012 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 cagagcctgccgcacctacgtggt 175 ||||||||| |||||||||||||| Sbjct: 192324 cagagcctggcgcacctacgtggt 192301
>dbj|AP006240.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-359D8, complete sequence Length = 193414 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 aaggccccagactcctcacc 212 |||||||||||||||||||| Sbjct: 178818 aaggccccagactcctcacc 178799
>emb|AL954154.5|CNS08CCS Oryza sativa chromosome 12, . BAC OSJNBb0072E04 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151176 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 386 caacctcgtcaccccgcaggagtgcaac 413 ||||||||||| |||||||||| ||||| Sbjct: 62057 caacctcgtcaacccgcaggagcgcaac 62084
>gb|AC034198.7| Homo sapiens chromosome 3 clone RP11-767C1 map 3p, complete sequence Length = 169005 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 cagagcctgccgcacctacgtggt 175 ||||||||| |||||||||||||| Sbjct: 49295 cagagcctggcgcacctacgtggt 49272
>gb|AC018836.5| Homo sapiens chromosome 3 clone RP11-588P9 map 3p, complete sequence Length = 184716 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 cagagcctgccgcacctacgtggt 175 ||||||||| |||||||||||||| Sbjct: 127937 cagagcctggcgcacctacgtggt 127914
>dbj|AP000494.1| Homo sapiens genomic DNA, chromosome 3p21.3, clone:301 to 308, anti-oncogene region, section 2/5 Length = 200000 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 aaggccccagactcctcacc 212 |||||||||||||||||||| Sbjct: 176123 aaggccccagactcctcacc 176104 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 79,800,132 Number of extensions: 3667036 Number of successful extensions: 65102 Number of sequences better than 10.0: 38 Number of HSP's gapped: 65093 Number of HSP's successfully gapped: 40 Length of query: 622 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 600 Effective length of database: 18,508,616,841 Effective search space: 11105170104600 Effective search space used: 11105170104600 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)