ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf33g13 |
|---|---|
| Clone Library Name | barley_pub |
>P34288:GAP_CAEEL GTPase-activating protein GAP - Caenorhabditis elegans| Length = 1317 Score = 35.8 bits (81), Expect = 1.3 Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 6/158 (3%) Frame = +3 Query: 309 SSSKNYPRNRNSLCFGLERFILGGGRSGMDEIGTPDYSDGGSDMDLLMLSGFDGLDSFPE 488 +S +N +R+ E+ +G R G T + +G S S DGL S P Sbjct: 67 ASLRNRQSSRSLGGLDFEKLRMGTARVGDSNEATAE--NGTSSSSSRKNSRDDGLTSSPT 124 Query: 489 LGTGPSFSDGILSSFSVSPAQPVTYISPSPPSVAAEEQGDVSIT----DGSDCSVSLASN 656 GP F+ SS S S S +VAA G V+ T S+ SV N Sbjct: 125 TVAGPVFTTSSTSSISTSG-------EASSTAVAAAAAGSVAATTSRQTSSNSSVDSNHN 177 Query: 657 EVMNVSAPTVPKT--VYGGVSLTERMLRALAMLKEAST 764 E M + PK+ + S+ E +L + + E S+ Sbjct: 178 EAMKMIRRARPKSYVLATSASMNEDVLSSSIIANEQSS 215
>Q9NZQ3:SPN90_HUMAN SH3 adapter protein SPIN90 - Homo sapiens (Human)| Length = 722 Score = 35.4 bits (80), Expect = 1.7 Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 8/129 (6%) Frame = +3 Query: 435 DMDLLMLSGFDGLDSFPELGTGPSFSDGILSSF------SVSPAQPVTYISPSPPSVAAE 596 D + LM SG G ++ P G S + S+ S SP++P + SP+PP V Sbjct: 190 DREALMASGSGGHNTMPSGGNSVSSGSSVSSTSLDTLYTSSSPSEPGSSCSPTPPPVPRR 249 Query: 597 EQGDVSITDGSDCSVSLASNEVMNVSAPTVP--KTVYGGVSLTERMLRALAMLKEASTGG 770 G+ +VS SAP P + V G + L AL L +T Sbjct: 250 ---------GTHTTVSQVQPPPSKASAPEPPAEEEVATGTTSASDDLEALGTLSLGTTEE 300 Query: 771 PVLVQVWIP 797 + +P Sbjct: 301 KAAAEAAVP 309
>P47033:PRY3_YEAST Protein PRY3 - Saccharomyces cerevisiae (Baker's yeast)| Length = 881 Score = 35.4 bits (80), Expect = 1.7 Identities = 33/161 (20%), Positives = 65/161 (40%) Frame = +3 Query: 1875 NINVPLENQISNSVERLANTKYAKFEPGTTSENFENCSSTGKNVSLTESTSDGLKIRSST 2054 +++V + +++ + A T E TSE + SST KN+S + +TS + S++ Sbjct: 447 DVSVTSVSSTAHTTKDTATTSVTASE-SITSETAQASSSTEKNISNSAATSSSIYSNSAS 505 Query: 2055 EKNVSLKVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKVNRSLQKIQN 2234 + +Y S + +A + V T I + + + I + +S + Sbjct: 506 VSGHGVTYAAEYAITSEQSSALATSVPATNCSSIVKTTTLENSSTTTITAITKSTTTLAT 565 Query: 2235 VISTVHGVEGVIKYDPATGCIVSSVSHTEEPSMMNAEHRSS 2357 + + DP +S S T+ NA+H S+ Sbjct: 566 TANNSTRAATAVTIDPTLDPTDNSASPTD-----NAKHTST 601
>P30153:2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A| alpha isoform - Homo sapiens (Human) Length = 589 Score = 35.0 bits (79), Expect = 2.2 Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 9/129 (6%) Frame = +3 Query: 981 VMYYNTSEFLRVDYAIRNEVRGSLAMPVFNSSGGSCCAVLEVVMTQEKDNFCSEMDN--- 1151 V Y +F + A+ E+ + +P F + C A + + + FC + Sbjct: 259 VRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR 318 Query: 1152 ----LSNALQCVHLSTVQARTHPQSLTKNQQSVLTEISGVL-KAVCHTHMLPLALAWI-P 1313 +S L C+ A H +S SV+ +S +L K H+LPL LA + Sbjct: 319 ENVIMSQILPCIKELVSDANQHVKSAL---ASVIMGLSPILGKDNTIEHLLPLFLAQLKD 375 Query: 1314 VCPNSNLNV 1340 CP LN+ Sbjct: 376 ECPEVRLNI 384
>Q9BYT3:STK33_HUMAN Serine/threonine-protein kinase 33 - Homo sapiens (Human)| Length = 514 Score = 34.7 bits (78), Expect = 2.9 Identities = 22/60 (36%), Positives = 29/60 (48%) Frame = +3 Query: 1881 NVPLENQISNSVERLANTKYAKFEPGTTSENFENCSSTGKNVSLTESTSDGLKIRSSTEK 2060 NVP N S+ E +T Y K P T+ +NF+ CSS S T S +I+ EK Sbjct: 433 NVPDANYTSDEEEEKQSTAYEKQFPATSKDNFDMCSS-----SFTSSKLLPAEIKGEMEK 487
>P11533:DMD_CHICK Dystrophin - Gallus gallus (Chicken)| Length = 3660 Score = 34.7 bits (78), Expect = 2.9 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 7/156 (4%) Frame = +3 Query: 2625 QNNVLGNSISMPQQCKIEIETDKSNTIVEQSLAXXXXXXXXXXXXXXXXXXLKKCFKSRS 2804 Q + S+ Q + ETDK+ ++++SLA + K + + Sbjct: 1357 QQEAVRRQKSLEQSIQSAQETDKTLRLIQESLA-----------------AIDKQLTAYT 1399 Query: 2805 VDGSNASIVVKAAYK---DDTVRLKLLTSMKYENLLEEIAKRLKLSVGTFQLKYKDDEDE 2975 D +A+ V + A K + T L MK N +E AKR+ + Q K +D + Sbjct: 1400 ADRVDAAQVPQEAQKIQSELTSHEISLEEMKKRNRGKESAKRVLSQIDVAQKKLQDVSMK 1459 Query: 2976 WVILASDAD----LQECLDVLDTTGSRIVKIQVRDV 3071 + + A+ LQEC +LD ++ K++ + V Sbjct: 1460 FRLFQKPANFEQRLQECKRILDEVKLQVPKLETKSV 1495
>Q5RFW2:TAB2_DANRE Mitogen-activated protein kinase kinase kinase 7-interacting| protein 2 homolog - Danio rerio (Zebrafish) (Brachydanio rerio) Length = 711 Score = 34.3 bits (77), Expect = 3.8 Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 9/166 (5%) Frame = +3 Query: 477 SFPELGTGPSFSDGILSSFSV-----SPAQPVTYISPSPPSVAAEEQGDVSI---TDGSD 632 S P T + S G + S+ S +QP YISPSPP+ A D ++ T S Sbjct: 336 SCPSSCTSLASSSGSSTPISIGGAGLSRSQPTVYISPSPPTAATAPSEDCALVPNTPRSQ 395 Query: 633 CSVSLASNEVMNVSAPTVPKTVYGGVSLTERMLRALAMLKEASTGGPVLVQVWIPVRNGD 812 + ++N + P TVY + + L L + GP + P Sbjct: 396 PKIYFSANTSADDGGGRNPPTVYISANPALQGPAGLRALGSQMSMGPAYIHHHPPKSRPS 455 Query: 813 HQVLTTSDQPFLLDERLTGYREVSRQFTFSATEGPGLFPGL-PGRV 947 T+ P ++ + + ++TF T P P + PG V Sbjct: 456 VGAGGTATSPRVV------VTQPNTKYTFKITVSPNKPPSVSPGVV 495
>Q91VX2:UBAP2_MOUSE Ubiquitin-associated protein 2 - Mus musculus (Mouse)| Length = 1132 Score = 34.3 bits (77), Expect = 3.8 Identities = 53/216 (24%), Positives = 84/216 (38%), Gaps = 7/216 (3%) Frame = -1 Query: 1111 MTTSN--TAQQEPPLELKTGMARDPRTSLRIA*STLKNSEVL*YITFDVHSGIPDMKTXX 938 MT N +A Q P +K R P S ++ S ++ +V G + + Sbjct: 487 MTVENIVSAHQPQPKHIKLPKRRVPPAS-KVPVSAVEMPGSSDVTGLNVQFGALEFGSEP 545 Query: 937 XXXXXXXXPSVAENVNCLETSLYPVSLSSSKKGWSEVVSTW*SPFLTGIQTCTRTGPPVD 758 S +EN N + SLYP SLS P + +Q+ T T V Sbjct: 546 SLSEFGSAASASENSNQIPISLYPKSLSEPLNAS--------FPMTSAVQSSTYTTSVVT 597 Query: 757 ASLSMANALSILSVRETPP*TVFGTVGALTFMTSLEAKLTEQSLPSVIETSPCSSAATEG 578 +S ++ALS T P T + +S+ ++ QS S +++P S A G Sbjct: 598 SSTLTSSALS-----STSPVTTSSSYD----QSSVHTRIAYQSSASPPDSAPGSVANGHG 648 Query: 577 G---EGEIYVTGCAGETLKDD--RIPSLNEGPVPSS 485 G + + T K D +PS++ P P+S Sbjct: 649 GGRSQHTVDTTSSVPAPKKTDPSALPSVSTLPGPAS 684
>P54612:2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A| alpha isoform - Sus scrofa (Pig) Length = 589 Score = 33.9 bits (76), Expect = 4.9 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 9/129 (6%) Frame = +3 Query: 981 VMYYNTSEFLRVDYAIRNEVRGSLAMPVFNSSGGSCCAVLEVVMTQEKDNFCSEMDN--- 1151 V Y +F + A+ E+ + +P F + C A + + + FC + Sbjct: 259 VRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR 318 Query: 1152 ----LSNALQCVHLSTVQARTHPQSLTKNQQSVLTEISGVL-KAVCHTHMLPLALAWI-P 1313 ++ L C+ A H +S SV+ +S +L K H+LPL LA + Sbjct: 319 ENVIMTQILPCIKELVSDANQHVKSAL---ASVIMGLSPILGKDNTIEHLLPLFLAQLKD 375 Query: 1314 VCPNSNLNV 1340 CP LN+ Sbjct: 376 ECPEVRLNI 384
>Q76MZ3:2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A| alpha isoform - Mus musculus (Mouse) Length = 589 Score = 33.9 bits (76), Expect = 4.9 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 9/129 (6%) Frame = +3 Query: 981 VMYYNTSEFLRVDYAIRNEVRGSLAMPVFNSSGGSCCAVLEVVMTQEKDNFCSEMDN--- 1151 V Y +F + A+ E+ + +P F + C A + + + FC + Sbjct: 259 VRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR 318 Query: 1152 ----LSNALQCVHLSTVQARTHPQSLTKNQQSVLTEISGVL-KAVCHTHMLPLALAWI-P 1313 ++ L C+ A H +S SV+ +S +L K H+LPL LA + Sbjct: 319 ENVIMTQILPCIKELVSDANQHVKSAL---ASVIMGLSPILGKDNTIEHLLPLFLAQLKD 375 Query: 1314 VCPNSNLNV 1340 CP LN+ Sbjct: 376 ECPEVRLNI 384
>Q06945:SOX4_HUMAN Transcription factor SOX-4 - Homo sapiens (Human)| Length = 474 Score = 33.5 bits (75), Expect = 6.5 Identities = 26/101 (25%), Positives = 41/101 (40%) Frame = +3 Query: 372 LGGGRSGMDEIGTPDYSDGGSDMDLLMLSGFDGLDSFPELGTGPSFSDGILSSFSVSPAQ 551 +G G D +G + G D LSG S P G P+ G S + SPA Sbjct: 312 VGAGADPSDPLGLYEEEGAGCSPDAPSLSGRSSAASSPAAGRSPADHRGYASLRAASPAP 371 Query: 552 PVTYISPSPPSVAAEEQGDVSITDGSDCSVSLASNEVMNVS 674 +PS S +A S + GS S +++++++ Sbjct: 372 S---SAPSHASSSASSHSSSSSSSGSSSSDDEFEDDLLDLN 409
>Q8IZL2:MAML2_HUMAN Mastermind-like protein 2 - Homo sapiens (Human)| Length = 1153 Score = 33.5 bits (75), Expect = 6.5 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 3/93 (3%) Frame = +3 Query: 2154 ICRQHGIS---RWPSRKIKKVNRSLQKIQNVISTVHGVEGVIKYDPATGCIVSSVSHTEE 2324 +CRQH +S R+ + + +R + ++S V +G K T ++ + T Sbjct: 46 VCRQHHLSCEGRYERGRAESSDRERESTLQLLSLVQHGQGARKAGKHTKATATAATTTAP 105 Query: 2325 PSMMNAEHRSSDSLPTECHKFQPDYDAYQREHL 2423 P A +S + T PDY + ++HL Sbjct: 106 PPPPAAPPAASQAAATAAPPPPPDYHHHHQQHL 138 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 648,389,924 Number of extensions: 14806189 Number of successful extensions: 38118 Number of sequences better than 10.0: 12 Number of HSP's gapped: 38086 Number of HSP's successfully gapped: 12 Length of query: 1187 Length of database: 100,686,439 Length adjustment: 125 Effective length of query: 1062 Effective length of database: 66,399,564 Effective search space: 70516336968 Effective search space used: 70516336968 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
