ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf33f24 |
|---|---|
| Clone Library Name | barley_pub |
>Q09550:YQU3_CAEEL Uncharacterized protein F26C11.3 precursor - Caenorhabditis elegans| Length = 1317 Score = 35.8 bits (81), Expect = 0.41 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 7/58 (12%) Frame = +3 Query: 519 TPWSKPSPESSTTVPTAARNSR-------GRSKASSIGMCQPPRSTSSRPKNTTAGSS 671 T S+ P SSTTVPT+A S + +SS P STS+ P+++T GS+ Sbjct: 346 TRTSEDKPSSSTTVPTSASTSESSTSSPMAETSSSSTTSQSSPASTSTVPESSTVGST 403
>Q5F3U0:SP130_CHICK Histone deacetylase complex subunit SAP130 - Gallus gallus| (Chicken) Length = 1057 Score = 34.3 bits (77), Expect = 1.2 Identities = 21/60 (35%), Positives = 29/60 (48%) Frame = +3 Query: 513 SPTPWSKPSPESSTTVPTAARNSRGRSKASSIGMCQPPRSTSSRPKNTTAGSSTSPRPSG 692 +P S P P PT + G + S+ QPP S+R +NT +S SPRP+G Sbjct: 632 APAQGSSPRPSILRKKPT----TDGLAVRKSLIPPQPPEVASTRVENTMRSTSGSPRPAG 687
>Q8SZ63:GOGA5_DROME Golgin-84 - Drosophila melanogaster (Fruit fly)| Length = 516 Score = 34.3 bits (77), Expect = 1.2 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 18/111 (16%) Frame = +2 Query: 404 EVKVPRLAFHRVWSTNDEVRILKALAAHQKEHGVLPQPDALVEALAGKLD---------- 553 E+ ++A + + + DE+R+ ++ E L Q ++EAL L Sbjct: 110 ELAAFKIALNEITAERDELRLRLEDLNNETEKFDLHQHTQVLEALVKSLSEERDKAVHDY 169 Query: 554 ------NRAY--SSKELQGKVKSLKHRYVSAAKKYELPTKEHDRRLFDLSK 682 N AY S EL+ + L+ Y+SAA K ++ TKE +++ +L + Sbjct: 170 NEAQAANMAYVHSISELETNLAKLQQEYISAAHKLQMQTKETEQQRQELQE 220
>Q8DR59:PBPA_STRR6 Penicillin-binding protein 1A - Streptococcus pneumoniae (strain| ATCC BAA-255 / R6) Length = 719 Score = 33.5 bits (75), Expect = 2.0 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = +3 Query: 525 WSKPSPESSTTVPTAARNSRGRSKASSIGMCQPPRSTSSRPKNTTAGSSTSP 680 WS P+P+ + +++ +S + SS ST++ P N T S+T+P Sbjct: 656 WSSPAPQQPPSTESSSSSSDSSTSQSSSTTPSTNNSTTTNPNNNTQQSNTTP 707
>Q9JIK1:MUCDL_RAT Mucin and cadherin-like protein precursor - Rattus norvegicus (Rat)| Length = 862 Score = 33.5 bits (75), Expect = 2.0 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Frame = +3 Query: 513 SPTPWSKPSPESSTT---VPTAARNSRGRSKASSIGMCQPPRSTSSRPKNTTAGSSTSPR 683 +P+ S +P+ T+ VPT ++ + S Q PR +S+P T G+STS + Sbjct: 570 TPSGSSTQTPKPGTSQPMVPTPGASTSSQPATPSGSSTQTPRPGTSQPMVPTPGASTSSQ 629 Query: 684 PSGP 695 P+ P Sbjct: 630 PATP 633
>Q01513:CYAA_PODAN Adenylate cyclase - Podospora anserina| Length = 2145 Score = 33.5 bits (75), Expect = 2.0 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = +3 Query: 522 PW--SKPSPESSTTVPTAARNSRGRSKASSIGMCQPPRSTSSRPKNTTAGSSTSP 680 PW + P+P SS +PT+ N + + S R+ ++RP TT GS+ SP Sbjct: 151 PWMAAAPTPASSGPLPTSFFNDSTDNLSLSSQTSPGLRNATARPSQTTTGSTESP 205
>Q8SX83:SPEN_DROME Protein split ends - Drosophila melanogaster (Fruit fly)| Length = 5560 Score = 33.1 bits (74), Expect = 2.7 Identities = 21/61 (34%), Positives = 30/61 (49%) Frame = +3 Query: 510 RSPTPWSKPSPESSTTVPTAARNSRGRSKASSIGMCQPPRSTSSRPKNTTAGSSTSPRPS 689 RSP+ +S S SS++ ++ +S S S G C SSR N+ +S S PS Sbjct: 450 RSPSSYS--SSHSSSSSSHSSSHSHASSPVQSSGNCAMAEGRSSRTVNSVTVTSNSSNPS 507 Query: 690 G 692 G Sbjct: 508 G 508
>P38681:NIR_NEUCR Nitrite reductase [NAD(P)H] - Neurospora crassa| Length = 1176 Score = 32.7 bits (73), Expect = 3.5 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Frame = +3 Query: 534 PSPESSTTVPTAARNSRGRSKASSIGMCQPPRS-TSSRPKNTTAGSSTSPRPSGP 695 PS SS+ +P + ++ RS + + PP+S TSS TTA SS + PSGP Sbjct: 1000 PSSCSSSALPPSPPSTPPRSSSP---VTSPPQSPTSSATPATTASSSCTTNPSGP 1051
>P29616:MYSC_CHICK Myosin heavy chain, cardiac muscle isoform - Gallus gallus| (Chicken) Length = 1102 Score = 32.7 bits (73), Expect = 3.5 Identities = 17/37 (45%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = +2 Query: 863 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 967 K+ + +AR+ L+E+++ +R A+ KVE RSDLARE+ Sbjct: 273 KIKELQARIEELEEELEAERAARAKVEKQRSDLAREL 309
>P04460:MYH6_RABIT Myosin-6 - Oryctolagus cuniculus (Rabbit)| Length = 465 Score = 32.7 bits (73), Expect = 3.5 Identities = 16/37 (43%), Positives = 29/37 (78%), Gaps = 2/37 (5%) Frame = +2 Query: 863 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 967 K+ +++AR+ L+E+++ +R A+ KVE RSDL+RE+ Sbjct: 304 KLKENQARIEELEEELEAERTARAKVEKLRSDLSREL 340
>Q02566:MYH6_MOUSE Myosin-6 - Mus musculus (Mouse)| Length = 1938 Score = 32.7 bits (73), Expect = 3.5 Identities = 16/37 (43%), Positives = 29/37 (78%), Gaps = 2/37 (5%) Frame = +2 Query: 863 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 967 K+ +++AR+ L+E+++ +R A+ KVE RSDL+RE+ Sbjct: 1109 KLKENQARIEELEEELEAERTARAKVEKLRSDLSREL 1145
>P13533:MYH6_HUMAN Myosin-6 - Homo sapiens (Human)| Length = 1939 Score = 32.7 bits (73), Expect = 3.5 Identities = 16/37 (43%), Positives = 29/37 (78%), Gaps = 2/37 (5%) Frame = +2 Query: 863 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 967 K+ +++AR+ L+E+++ +R A+ KVE RSDL+RE+ Sbjct: 1109 KLKENQARIEELEEELEAERTARAKVEKLRSDLSREL 1145
>Q8WQ85:VILD_DICDI Villidin - Dictyostelium discoideum (Slime mold)| Length = 1704 Score = 32.3 bits (72), Expect = 4.6 Identities = 20/59 (33%), Positives = 31/59 (52%) Frame = +3 Query: 510 RSPTPWSKPSPESSTTVPTAARNSRGRSKASSIGMCQPPRSTSSRPKNTTAGSSTSPRP 686 +S +SKPSP SST+ P + + AS + + Q +T++ TT SS+S P Sbjct: 653 KSSGGFSKPSPSSSTSTPPS-------TFASPLSIAQTSSTTTTTTTTTTTTSSSSTPP 704
>P13728:SGS3_DROYA Salivary glue protein Sgs-3 precursor - Drosophila yakuba (Fruit| fly) Length = 263 Score = 32.3 bits (72), Expect = 4.6 Identities = 19/61 (31%), Positives = 30/61 (49%) Frame = +3 Query: 507 CRSPTPWSKPSPESSTTVPTAARNSRGRSKASSIGMCQPPRSTSSRPKNTTAGSSTSPRP 686 C PT +P P T PT + R K+++ R T++RP TT ++T+ RP Sbjct: 55 CAPPT---RPPPPPCTDAPTTTK--RTTEKSTTRRTTTTTRQTTTRPTTTTTTTTTTRRP 109 Query: 687 S 689 + Sbjct: 110 T 110
>P59644:PI5PA_MOUSE Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A - Mus| musculus (Mouse) Length = 1003 Score = 32.3 bits (72), Expect = 4.6 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 10/70 (14%) Frame = +3 Query: 510 RSP---TPWSKPSPESSTTVPTAARN-----SRGRSKASSIGMCQPPRSTSSRPKNTT-- 659 RSP +P +P SS TVP R SR S++ + C PP + PK T Sbjct: 319 RSPGLLSPTFRPGIPSSQTVPPPLRKPPRSPSRSPSRSPNRSPCLPPAPEVALPKPVTQA 378 Query: 660 AGSSTSPRPS 689 AGS P P+ Sbjct: 379 AGSGRCPSPN 388
>Q04707:PBPA_STRPN Penicillin-binding protein 1A - Streptococcus pneumoniae| Length = 719 Score = 32.3 bits (72), Expect = 4.6 Identities = 14/52 (26%), Positives = 27/52 (51%) Frame = +3 Query: 525 WSKPSPESSTTVPTAARNSRGRSKASSIGMCQPPRSTSSRPKNTTAGSSTSP 680 W+ P+P+ + +++ +S + SS ST++ P N T S+T+P Sbjct: 656 WNSPAPQQPPSTESSSSSSDSSTSQSSSTTPSTNNSTTTNPNNNTQQSNTTP 707
>P02563:MYH6_RAT Myosin-6 - Rattus norvegicus (Rat)| Length = 1938 Score = 32.3 bits (72), Expect = 4.6 Identities = 16/37 (43%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = +2 Query: 863 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 967 K+ +++AR+ L+E+++ +R A+ KVE RSDL RE+ Sbjct: 1108 KLKENQARIEELEEELEAERTARAKVEKLRSDLTREL 1144
>P13539:MYH6_MESAU Myosin-6 - Mesocricetus auratus (Golden hamster)| Length = 1939 Score = 32.3 bits (72), Expect = 4.6 Identities = 16/37 (43%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Frame = +2 Query: 863 KMDDDKARL--LDEKIKKQRVAQMKVELHRSDLAREV 967 K+ +++AR+ L+E+++ +R A+ KVE RSDL RE+ Sbjct: 1109 KLKENQARIEELEEELEAERTARAKVEKLRSDLTREL 1145
>Q9IAM7:MRE11_CHICK Double-strand break repair protein MRE11 - Gallus gallus (Chicken)| Length = 700 Score = 32.3 bits (72), Expect = 4.6 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Frame = +3 Query: 531 KPSPESSTTVPTAARNSRGRSKA-SSIGMCQPPRSTSSRPK-NTTAGSSTSPR 683 K S +S +PT RGR +A + G R +S R + NT+ GSSTS R Sbjct: 552 KASGDSDDDIPTTLSRGRGRGRARGARGQNSAARGSSRRGRGNTSQGSSTSSR 604
>Q9JIM0:MRE11_RAT Double-strand break repair protein MRE11A - Rattus norvegicus (Rat)| Length = 706 Score = 32.0 bits (71), Expect = 6.0 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +3 Query: 537 SPESSTTVPTAARNSRGRSKASSIGMCQPPRSTSSRPKNTTAGSSTSPRPS 689 S +S + VP+ R RGR + G PR S R ++T G ST R S Sbjct: 558 SDDSQSAVPSRGRG-RGRGRRGGRGQSTAPRGGSQRGRDTGLGISTRGRSS 607
>Q12446:LAS17_YEAST Proline-rich protein LAS17 - Saccharomyces cerevisiae (Baker's| yeast) Length = 633 Score = 32.0 bits (71), Expect = 6.0 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = +3 Query: 516 PTPWSKPSPESSTTVPTAARNSRGRSKASSIGMCQPPRSTSSRPKNTTAGSSTSPRPSGP 695 P P + +P +T VP A +S+G Q P+S S P T S+TS P P Sbjct: 452 PLPQNTQAPSQATNVPVAPP-----PPPASLGQSQIPQSAPSAPIPPTLPSTTSAAPPPP 506
>Q8RP04:HPAB3_PSEYM Effector protein hopAB3 - Pseudomonas syringae pv. maculicola| Length = 385 Score = 32.0 bits (71), Expect = 6.0 Identities = 19/62 (30%), Positives = 32/62 (51%) Frame = +3 Query: 501 ACCRSPTPWSKPSPESSTTVPTAARNSRGRSKASSIGMCQPPRSTSSRPKNTTAGSSTSP 680 A R+P S +PE S TA +S G ++ S +G +++ R ++ + +STS Sbjct: 223 APARTPPRSSVRTPERSPAPRTATESSSGSNQRSLLGRFAGLMTSNQRRPSSASNASTSQ 282 Query: 681 RP 686 RP Sbjct: 283 RP 284
>Q5R807:FCHO2_PONPY FCH domain only protein 2 - Pongo pygmaeus (Orangutan)| Length = 810 Score = 32.0 bits (71), Expect = 6.0 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +3 Query: 522 PWSKPSPESSTTVPTAARNSRGRSKASSIGMCQPPRSTSSRPKNTT---AGSSTSPRPSG 692 P PS +SS++ + +S + S+G PP +SRPK T+ +G + PRP Sbjct: 429 PLFGPSLDSSSSSSLTSSSSARPTTPLSVGTIVPPPRPASRPKLTSGKLSGINEIPRPFS 488 Query: 693 P 695 P Sbjct: 489 P 489
>Q0JRZ9:FCHO2_HUMAN FCH domain only protein 2 - Homo sapiens (Human)| Length = 810 Score = 32.0 bits (71), Expect = 6.0 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +3 Query: 522 PWSKPSPESSTTVPTAARNSRGRSKASSIGMCQPPRSTSSRPKNTT---AGSSTSPRPSG 692 P PS +SS++ + +S + S+G PP +SRPK T+ +G + PRP Sbjct: 429 PLFGPSLDSSSSSSLTSSSSARPTTPLSVGTIVPPPRPASRPKLTSGKLSGINEIPRPFS 488 Query: 693 P 695 P Sbjct: 489 P 489
>Q8K327:K1802_MOUSE Zinc finger protein KIAA1802 - Mus musculus (Mouse)| Length = 802 Score = 27.3 bits (59), Expect(2) = 6.2 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 10/72 (13%) Frame = +3 Query: 513 SPTPWSKPSPESSTTVPTAA------RNSRGRS----KASSIGMCQPPRSTSSRPKNTTA 662 SP W K SP+ T P + ++S G K+S I Q P S K+T + Sbjct: 434 SPDLW-KVSPDQRKTSPASLDFPEPQKSSCGSPPDLWKSSFIMESQKPNVFSETRKHTAS 492 Query: 663 GSSTSPRPSGPV 698 GSS SP+ + + Sbjct: 493 GSSESPKVASDI 504 Score = 23.1 bits (48), Expect(2) = 6.2 Identities = 8/22 (36%), Positives = 12/22 (54%) Frame = +2 Query: 353 KDAPPPKPSVKQQAKGPEVKVP 418 + PP P ++ A PE+K P Sbjct: 410 RPGPPLSPEIRSPAGSPELKKP 431
>O10346:Y107_NPVOP Hypothetical 29.4 kDa protein - Orgyia pseudotsugata multicapsid| polyhedrosis virus (OpMNPV) Length = 256 Score = 31.6 bits (70), Expect = 7.8 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Frame = +3 Query: 516 PTPWSKPSPESSTTVPTAARNSRGRSKASSIGMCQPPR-STSSRPKNTTAGSSTSPRPS 689 P P P+P S ++ N R R +S+ P R + RP TT + +P+P+ Sbjct: 187 PIPMPAPAPAPSASLLDNVMNERKRKLQASVTTTPPKRCKLADRPAQTTQDTPRAPQPA 245
>Q02817:MUC2_HUMAN Mucin-2 precursor - Homo sapiens (Human)| Length = 5179 Score = 31.6 bits (70), Expect = 7.8 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Frame = +3 Query: 429 STASGPPTMXXXXXXXXXXXXXXXACCRSPTPWSKPSPESSTTV---PTAARNSRGRSKA 599 +T PPT +P P + PSP STT PT + + + Sbjct: 1419 TTTPSPPTTTTTTPPPTTTPSPPITTTTTPLPTTTPSPPISTTTTPPPTTTPSPPTTTPS 1478 Query: 600 SSIGMCQPPRSTSSRPKNTTAGSSTSPRPSGP 695 PP +T++ P TT S P P Sbjct: 1479 PPTTTPSPPTTTTTTPPPTTTPSPPMTTPITP 1510 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 179,283,400 Number of extensions: 3444194 Number of successful extensions: 13701 Number of sequences better than 10.0: 27 Number of HSP's gapped: 13635 Number of HSP's successfully gapped: 28 Length of query: 442 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 326 Effective length of database: 68,868,219 Effective search space: 22451039394 Effective search space used: 22451039394 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
