ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf33f16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os03g11660:12003.t00967:unspliced-genomic cysteine synth... 29 4.8
2LOC_Os02g43930:12002.t03978:unspliced-genomic dnaJ protein h... 29 4.8
3LOC_Os08g25250:12008.t02294:unspliced-genomic conserved hypo... 29 5.1
4LOC_Os05g09630:12005.t00839:unspliced-genomic NDX1 homeobox ... 29 5.1
5LOC_Os12g39660:12012.t03645:unspliced-genomic calcium-transp... 28 6.6
6LOC_Os10g01610:12010.t00058:unspliced-genomic expressed protein 28 6.6
7LOC_Os07g02390:12007.t00130:unspliced-genomic hypothetical p... 28 6.6
8LOC_Os04g40410:12004.t03605:unspliced-genomic component of h... 28 6.6
9LOC_Os03g21710:12003.t01924:unspliced-genomic WRKY DNA bindi... 28 6.6
10LOC_Os01g73450:12001.t06626:unspliced-genomic uridylate kina... 28 6.6
11LOC_Os11g37700:12011.t03310:unspliced-genomic ATPase, couple... 28 7.0
12LOC_Os06g38040:12006.t03499:unspliced-genomic retrotransposo... 28 7.0
13LOC_Os12g06560:12012.t00541:unspliced-genomic expressed protein 28 9.1
14LOC_Os04g51090:12004.t04587:unspliced-genomic expressed protein 28 9.1
15LOC_Os07g18154:12007.t01674:unspliced-genomic aldehyde oxida... 28 9.6
16LOC_Os08g42910:12008.t04020:unspliced-genomic methionine ami... 24 9.7

>LOC_Os03g11660:12003.t00967:unspliced-genomic cysteine synthase, putative, expressed|
          Length = 3412
 Score = 28.6 bits (56), Expect = 4.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3 / +2

                                
Query: 36   CF*LYIVFKWFVRSNYKRCF 95
            C+  Y  F W    NY RCF
Sbjct: 1550 CYLSYPFFSWLAELNYARCF 1609



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>LOC_Os02g43930:12002.t03978:unspliced-genomic dnaJ protein homolog 2, putative, expressed|
          Length = 4109

 Score = 28.6 bits (56), Expect = 4.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3 / -1

                                
Query: 126  KRLIISCVNIFVWKSKKKKN 185
            KR II+C++ F W   KKKN
Sbjct: 3836 KREIITCISYFRWGYIKKKN 3777



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>LOC_Os08g25250:12008.t02294:unspliced-genomic conserved hypothetical protein|
          Length = 4756

 Score = 28.6 bits (56), Expect = 5.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2 / -3

                                    
Query: 5    CIRQSMLLIDLFLAIYSVQMVCKE 76
            C+     L++L  +I+SVQ++C+E
Sbjct: 3986 CLELQFFLVNLQFSIFSVQILCEE 3915



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>LOC_Os05g09630:12005.t00839:unspliced-genomic NDX1 homeobox protein, putative, expressed|
          Length = 8152

 Score = 28.6 bits (56), Expect = 5.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2 / -3

                                       
Query: 96   KNIFCSCSLQTI*TLYIARNKSISNID 16
            KN FC    +++  LY ARNK   N+D
Sbjct: 5315 KNTFCRNISKSVSKLYAARNKLKPNVD 5235



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>LOC_Os12g39660:12012.t03645:unspliced-genomic calcium-transporting ATPase 2, plasma membrane-type, putative,|
            expressed
          Length = 5719

 Score = 28.1 bits (55), Expect = 6.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3 / -1

                                 
Query: 69   VRSNYKRCFFRGMGLEALIKR 131
            + +NY RC  R M LE L++R
Sbjct: 5056 ISTNYDRCIAREMDLELLVQR 4994



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>LOC_Os10g01610:12010.t00058:unspliced-genomic expressed protein|
          Length = 9317

 Score = 28.1 bits (55), Expect = 6.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3 / -3

                                     
Query: 128  FNQSF*PHPSKKTSFVVAPYKPFEH 54
            FN+ F PHP K+ S      KP  H
Sbjct: 2802 FNEIFFPHPQKR*SSFFTQVKPVTH 2728



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>LOC_Os07g02390:12007.t00130:unspliced-genomic hypothetical protein|
          Length = 2928

 Score = 28.1 bits (55), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3 / +3

                                      
Query: 131 PFNQSF*PHPSKKTSFVVAPYKPFEHY 51
           P N +  P PS  T+ ++A Y PF+ Y
Sbjct: 108 PTNSTVSPSPSPSTAPLLATYVPFKSY 188



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>LOC_Os04g40410:12004.t03605:unspliced-genomic component of high affinity nitrate transporter, putative, expressed|
          Length = 1168

 Score = 28.1 bits (55), Expect = 6.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3 / -3

                            
Query: 45   LYIVFKWFVRSNYKRC 92
            ++++F+WF R N +RC
Sbjct: 1154 IHLLFRWFCRLNIRRC 1107



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>LOC_Os03g21710:12003.t01924:unspliced-genomic WRKY DNA binding domain containing protein, expressed|
          Length = 2227

 Score = 28.1 bits (55), Expect = 6.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3 / +3

                               
Query: 123  IKRLIISCVNIFVWKSKKK 179
            IK L++SC+   +WKS K+
Sbjct: 1881 IKALVLSCIMASLWKSNKQ 1937



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>LOC_Os01g73450:12001.t06626:unspliced-genomic uridylate kinase, putative, expressed|
          Length = 4177

 Score = 28.1 bits (55), Expect = 6.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3 / -3

                          
Query: 45   LYIVFKWFVRSNYK 86
            +Y++  WFV+SNYK
Sbjct: 2462 IYLLIVWFVKSNYK 2421



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>LOC_Os11g37700:12011.t03310:unspliced-genomic ATPase, coupled to transmembrane movement of substances, putative,|
            expressed
          Length = 9619

 Score = 28.1 bits (55), Expect = 7.0
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -2 / -2

                       
Query: 93   NIFCSCSLQTI 61
            NI+CSCSLQT+
Sbjct: 8331 NIYCSCSLQTL 8299



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>LOC_Os06g38040:12006.t03499:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 4438

 Score = 28.1 bits (55), Expect = 7.0
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2 / -1

                                                    
Query: 5    CIRQSMLLIDLFLAIYSVQMVCKEQLQKMFF*RDGVRSFD 124
            CI Q  ++I L  A YS   V K ++ KMF     V S D
Sbjct: 3853 CIHQIDVIIILAFAYYSDPSVKKYKISKMFIVNSKVSSKD 3734



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>LOC_Os12g06560:12012.t00541:unspliced-genomic expressed protein|
          Length = 4796

 Score = 27.6 bits (54), Expect = 9.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3 / -1

                                   
Query: 117  ALIKRLIISCVNIFVWKSKKKKN 185
            +LI RLI+S    F W  KK KN
Sbjct: 3110 SLIDRLILSRPTYFFWYGKKYKN 3042



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>LOC_Os04g51090:12004.t04587:unspliced-genomic expressed protein|
          Length = 14055

 Score = 27.6 bits (54), Expect = 9.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3 / +1

                                   
Query: 90   CFFRGMGLEALIKRLIISCVNIF 158
            C+  GMG+E ++    I C+NIF
Sbjct: 5143 CWRGGMGVEQIMTTTDIVCINIF 5211



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>LOC_Os07g18154:12007.t01674:unspliced-genomic aldehyde oxidase 1, putative, expressed|
          Length = 12088

 Score = 27.6 bits (54), Expect = 9.6
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = +2 / -3

                                             
Query: 2     VCIRQSMLLIDLFLAIYSVQMVCKEQLQKMFF 97
             +CI+  + L  + L + +++++  +Q+QK+FF
Sbjct: 10091 LCIQDELFLPPVQLFLSAIELLQAQQMQKVFF 9996



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>LOC_Os08g42910:12008.t04020:unspliced-genomic methionine aminopeptidase 2A, putative, expressed|
          Length = 3900

 Score = 23.5 bits (45), Expect(2) = 9.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3 / -1

                                
Query: 39   F*LYIVFKWFVRSNYKRCFF 98
            F + I+F W VRS++  C F
Sbjct: 1056 FCIIIIFWW*VRSSFAICNF 997



 Score = 22.1 bits (42), Expect(2) = 9.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3 / -1

                             
Query: 111 LEALIKRLIISCVNIFVW 164
           L+ L  RLI++ + I VW
Sbjct: 645 LQTLNNRLILNGIRIIVW 592


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 58,318,215
Number of extensions: 811664
Number of successful extensions: 1544
Number of sequences better than 10.0: 16
Length of query: 62
Length of database: 55,613,886
Length adjustment: 43
Effective length of query: 19
Effective length of database: 53,193,932
Effective search space: 1010684708
Effective search space used: 1010684708
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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