| Clone Name | FLbaf33f16 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os03g11660:12003.t00967:unspliced-genomic cysteine synthase, putative, expressed| Length = 3412 Score = 28.6 bits (56), Expect = 4.8 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = +3 / +2 Query: 36 CF*LYIVFKWFVRSNYKRCF 95 C+ Y F W NY RCF Sbjct: 1550 CYLSYPFFSWLAELNYARCF 1609
>LOC_Os02g43930:12002.t03978:unspliced-genomic dnaJ protein homolog 2, putative, expressed| Length = 4109 Score = 28.6 bits (56), Expect = 4.8 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +3 / -1 Query: 126 KRLIISCVNIFVWKSKKKKN 185 KR II+C++ F W KKKN Sbjct: 3836 KREIITCISYFRWGYIKKKN 3777
>LOC_Os08g25250:12008.t02294:unspliced-genomic conserved hypothetical protein| Length = 4756 Score = 28.6 bits (56), Expect = 5.1 Identities = 9/24 (37%), Positives = 17/24 (70%) Frame = +2 / -3 Query: 5 CIRQSMLLIDLFLAIYSVQMVCKE 76 C+ L++L +I+SVQ++C+E Sbjct: 3986 CLELQFFLVNLQFSIFSVQILCEE 3915
>LOC_Os05g09630:12005.t00839:unspliced-genomic NDX1 homeobox protein, putative, expressed| Length = 8152 Score = 28.6 bits (56), Expect = 5.1 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -2 / -3 Query: 96 KNIFCSCSLQTI*TLYIARNKSISNID 16 KN FC +++ LY ARNK N+D Sbjct: 5315 KNTFCRNISKSVSKLYAARNKLKPNVD 5235
>LOC_Os12g39660:12012.t03645:unspliced-genomic calcium-transporting ATPase 2, plasma membrane-type, putative,| expressed Length = 5719 Score = 28.1 bits (55), Expect = 6.6 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 / -1 Query: 69 VRSNYKRCFFRGMGLEALIKR 131 + +NY RC R M LE L++R Sbjct: 5056 ISTNYDRCIAREMDLELLVQR 4994
>LOC_Os10g01610:12010.t00058:unspliced-genomic expressed protein| Length = 9317 Score = 28.1 bits (55), Expect = 6.6 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -3 / -3 Query: 128 FNQSF*PHPSKKTSFVVAPYKPFEH 54 FN+ F PHP K+ S KP H Sbjct: 2802 FNEIFFPHPQKR*SSFFTQVKPVTH 2728
>LOC_Os07g02390:12007.t00130:unspliced-genomic hypothetical protein| Length = 2928 Score = 28.1 bits (55), Expect = 6.6 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -3 / +3 Query: 131 PFNQSF*PHPSKKTSFVVAPYKPFEHY 51 P N + P PS T+ ++A Y PF+ Y Sbjct: 108 PTNSTVSPSPSPSTAPLLATYVPFKSY 188
>LOC_Os04g40410:12004.t03605:unspliced-genomic component of high affinity nitrate transporter, putative, expressed| Length = 1168 Score = 28.1 bits (55), Expect = 6.6 Identities = 7/16 (43%), Positives = 13/16 (81%) Frame = +3 / -3 Query: 45 LYIVFKWFVRSNYKRC 92 ++++F+WF R N +RC Sbjct: 1154 IHLLFRWFCRLNIRRC 1107
>LOC_Os03g21710:12003.t01924:unspliced-genomic WRKY DNA binding domain containing protein, expressed| Length = 2227 Score = 28.1 bits (55), Expect = 6.6 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = +3 / +3 Query: 123 IKRLIISCVNIFVWKSKKK 179 IK L++SC+ +WKS K+ Sbjct: 1881 IKALVLSCIMASLWKSNKQ 1937
>LOC_Os01g73450:12001.t06626:unspliced-genomic uridylate kinase, putative, expressed| Length = 4177 Score = 28.1 bits (55), Expect = 6.6 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = +3 / -3 Query: 45 LYIVFKWFVRSNYK 86 +Y++ WFV+SNYK Sbjct: 2462 IYLLIVWFVKSNYK 2421
>LOC_Os11g37700:12011.t03310:unspliced-genomic ATPase, coupled to transmembrane movement of substances, putative,| expressed Length = 9619 Score = 28.1 bits (55), Expect = 7.0 Identities = 9/11 (81%), Positives = 11/11 (100%) Frame = -2 / -2 Query: 93 NIFCSCSLQTI 61 NI+CSCSLQT+ Sbjct: 8331 NIYCSCSLQTL 8299
>LOC_Os06g38040:12006.t03499:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4438 Score = 28.1 bits (55), Expect = 7.0 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +2 / -1 Query: 5 CIRQSMLLIDLFLAIYSVQMVCKEQLQKMFF*RDGVRSFD 124 CI Q ++I L A YS V K ++ KMF V S D Sbjct: 3853 CIHQIDVIIILAFAYYSDPSVKKYKISKMFIVNSKVSSKD 3734
>LOC_Os12g06560:12012.t00541:unspliced-genomic expressed protein| Length = 4796 Score = 27.6 bits (54), Expect = 9.1 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +3 / -1 Query: 117 ALIKRLIISCVNIFVWKSKKKKN 185 +LI RLI+S F W KK KN Sbjct: 3110 SLIDRLILSRPTYFFWYGKKYKN 3042
>LOC_Os04g51090:12004.t04587:unspliced-genomic expressed protein| Length = 14055 Score = 27.6 bits (54), Expect = 9.1 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +3 / +1 Query: 90 CFFRGMGLEALIKRLIISCVNIF 158 C+ GMG+E ++ I C+NIF Sbjct: 5143 CWRGGMGVEQIMTTTDIVCINIF 5211
>LOC_Os07g18154:12007.t01674:unspliced-genomic aldehyde oxidase 1, putative, expressed| Length = 12088 Score = 27.6 bits (54), Expect = 9.6 Identities = 9/32 (28%), Positives = 22/32 (68%) Frame = +2 / -3 Query: 2 VCIRQSMLLIDLFLAIYSVQMVCKEQLQKMFF 97 +CI+ + L + L + +++++ +Q+QK+FF Sbjct: 10091 LCIQDELFLPPVQLFLSAIELLQAQQMQKVFF 9996
>LOC_Os08g42910:12008.t04020:unspliced-genomic methionine aminopeptidase 2A, putative, expressed| Length = 3900 Score = 23.5 bits (45), Expect(2) = 9.7 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +3 / -1 Query: 39 F*LYIVFKWFVRSNYKRCFF 98 F + I+F W VRS++ C F Sbjct: 1056 FCIIIIFWW*VRSSFAICNF 997 Score = 22.1 bits (42), Expect(2) = 9.7 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = +3 / -1 Query: 111 LEALIKRLIISCVNIFVW 164 L+ L RLI++ + I VW Sbjct: 645 LQTLNNRLILNGIRIIVW 592 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 58,318,215 Number of extensions: 811664 Number of successful extensions: 1544 Number of sequences better than 10.0: 16 Length of query: 62 Length of database: 55,613,886 Length adjustment: 43 Effective length of query: 19 Effective length of database: 53,193,932 Effective search space: 1010684708 Effective search space used: 1010684708 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)