ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf33f16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR392037.10| Zebrafish DNA sequence from clone CH211-244O22 ... 44 0.16
2emb|BX119909.5| Zebrafish DNA sequence from clone CH211-223I3 in... 42 0.64
3gb|DQ156150.1| Salmo salar BAC S0188I22, partial sequence 40 2.5
4gb|AC109157.10| Mus musculus chromosome 7, clone RP24-169M16, co... 40 2.5
5gb|AC007321.2| Homo sapiens BAC clone RP11-507C1 from 7, complet... 40 2.5
6gb|AC160553.7| Mus musculus chromosome 7, clone RP23-334C12, com... 40 2.5
7gb|AC146192.2| Pan troglodytes BAC clone RP43-35D13 from 7, comp... 40 2.5
8emb|AL390247.11| Human DNA sequence from clone RP11-778A10 on ch... 40 2.5
9emb|AL353660.11| Human DNA sequence from clone RP11-459P23 on ch... 40 2.5
10emb|CR751235.5| Zebrafish DNA sequence from clone CH211-240J22 i... 40 2.5
11gb|AE000783.1| Borrelia burgdorferi B31, complete genome 40 2.5
12emb|BX571839.8| Zebrafish DNA sequence from clone DKEY-259P7 in ... 40 2.5
13emb|BX005472.11| Zebrafish DNA sequence from clone CH211-119C22 ... 40 2.5
14gb|L32145.1|BORHTPG Borrelia burgdorferi C62.5 heat shock protei... 40 2.5
15gb|U51878.1|BBU51878 Borrelia burgdorferi phosphotransferase enz... 40 2.5

>emb|CR392037.10| Zebrafish DNA sequence from clone CH211-244O22 in linkage group 5,
             complete sequence
          Length = 140415
 Score = 44.1 bits (22), Expect = 0.16
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 23    ttgctgatagatttgtttctagctat 48
             ||||||||||||||||||||| ||||
Sbjct: 61897 ttgctgatagatttgtttctatctat 61872



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>emb|BX119909.5| Zebrafish DNA sequence from clone CH211-223I3 in linkage group 6,
              complete sequence
          Length = 221755

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 20     atgttgctgatagatttgttt 40
              |||||||||||||||||||||
Sbjct: 123193 atgttgctgatagatttgttt 123213



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>gb|DQ156150.1| Salmo salar BAC S0188I22, partial sequence
          Length = 203947

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     ttctagctatatatagtgtt 58
              ||||||||||||||||||||
Sbjct: 101867 ttctagctatatatagtgtt 101886



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>gb|AC109157.10| Mus musculus chromosome 7, clone RP24-169M16, complete sequence
          Length = 164968

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    attaaaaggctaataatcag 142
              ||||||||||||||||||||
Sbjct: 163584 attaaaaggctaataatcag 163603



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>gb|AC007321.2| Homo sapiens BAC clone RP11-507C1 from 7, complete sequence
          Length = 158770

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    tgttgctgatagatttgttt 40
             ||||||||||||||||||||
Sbjct: 43465 tgttgctgatagatttgttt 43446



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>gb|AC160553.7| Mus musculus chromosome 7, clone RP23-334C12, complete sequence
          Length = 191999

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   attaaaaggctaataatcag 142
             ||||||||||||||||||||
Sbjct: 91382 attaaaaggctaataatcag 91401



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>gb|AC146192.2| Pan troglodytes BAC clone RP43-35D13 from 7, complete sequence
          Length = 178260

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    tgttgctgatagatttgttt 40
             ||||||||||||||||||||
Sbjct: 63143 tgttgctgatagatttgttt 63124



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>emb|AL390247.11| Human DNA sequence from clone RP11-778A10 on chromosome 6, complete
             sequence
          Length = 161241

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 119   tttgattaaaaggctaataatcag 142
             |||| |||||||||||||||||||
Sbjct: 85718 tttggttaaaaggctaataatcag 85741



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>emb|AL353660.11| Human DNA sequence from clone RP11-459P23 on chromosome 13 Contains a
              novel gene, complete sequence
          Length = 129241

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    gctgtgtaaatatatttgtt 161
              ||||||||||||||||||||
Sbjct: 121270 gctgtgtaaatatatttgtt 121251



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>emb|CR751235.5| Zebrafish DNA sequence from clone CH211-240J22 in linkage group 4,
             complete sequence
          Length = 104632

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   ggctaataatcagctgtgta 149
             ||||||||||||||||||||
Sbjct: 45355 ggctaataatcagctgtgta 45374



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>gb|AE000783.1| Borrelia burgdorferi B31, complete genome
          Length = 910724

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     atcaatgttgctgatagatt 35
              ||||||||||||||||||||
Sbjct: 572173 atcaatgttgctgatagatt 572192



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>emb|BX571839.8| Zebrafish DNA sequence from clone DKEY-259P7 in linkage group 16,
             complete sequence
          Length = 168648

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   tgtgtaaatatatttgtttg 163
             ||||||||||||||||||||
Sbjct: 74597 tgtgtaaatatatttgtttg 74616



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>emb|BX005472.11| Zebrafish DNA sequence from clone CH211-119C22 in linkage group 11,
             complete sequence
          Length = 158170

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   taaatatatttgtttggaaa 167
             ||||||||||||||||||||
Sbjct: 25001 taaatatatttgtttggaaa 25020



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>gb|L32145.1|BORHTPG Borrelia burgdorferi C62.5 heat shock protein (htpG) gene,
          partial cds
          Length = 236

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 16 atcaatgttgctgatagatt 35
          ||||||||||||||||||||
Sbjct: 80 atcaatgttgctgatagatt 61



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>gb|U51878.1|BBU51878 Borrelia burgdorferi phosphotransferase enzyme II (crr) gene, hsp90
           (hptg) gene, complete cds
          Length = 2732

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  atcaatgttgctgatagatt 35
           ||||||||||||||||||||
Sbjct: 928 atcaatgttgctgatagatt 947


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 40,197,765
Number of extensions: 2007925
Number of successful extensions: 159776
Number of sequences better than 10.0: 15
Number of HSP's gapped: 159776
Number of HSP's successfully gapped: 15
Length of query: 187
Length of database: 18,610,659,111
Length adjustment: 21
Effective length of query: 166
Effective length of database: 18,513,255,126
Effective search space: 3073200350916
Effective search space used: 3073200350916
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)
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